Literature DB >> 21587828

4-{(E)-[2-(4-Iodo-but-oxy)benzyl-idene]amino}-1,5-dimethyl-2-phenyl-1H-pyrazol-3(2H)-one.

Hoong-Kun Fun, Madhukar Hemamalini, Abdullah M Asiri, Salman A Khan.   

Abstract

The title Schiff base compound, C(22)H(24)IN(3)O(2), adopts an E configuration about the central C=N bond. The pyrazolone ring makes a dihedral angle of 49.68 (10)° with its attached phenyl ring. The phenolate plane makes dihedral angles of 16.78 (9) and 50.54 (9)°, respectively, with the pyrazolone ring and the terminal phenyl ring. An intra-molecular C-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal structure, an inter-molecular C-H⋯O hydrogen bond is also observed.

Entities:  

Year:  2010        PMID: 21587828      PMCID: PMC3006957          DOI: 10.1107/S1600536810020374

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and applications of Schiff bases, see: Tarafder et al. (2002 ▶); Silver & Soderlund (2005 ▶); Vicini et al. (2003 ▶); Ozdemir et al. (2007 ▶); Joshi et al. (2004 ▶). For background to and the biological activity of 4-amino­anti­pyrene and its derivatives, see: Jain et al. (2003 ▶); Filho et al. (1998 ▶); Sondhi et al. (1999 ▶); Mishra (1999 ▶); Sondhi et al. (2001 ▶). For related structures, see: Eryigit & Kendi (1998 ▶); Manikandan et al. (2000 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C22H24IN3O2 M = 489.34 Monoclinic, a = 11.5235 (10) Å b = 16.4156 (14) Å c = 11.2828 (9) Å β = 94.010 (2)° V = 2129.1 (3) Å3 Z = 4 Mo Kα radiation μ = 1.53 mm−1 T = 100 K 0.41 × 0.34 × 0.29 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.571, T max = 0.663 36214 measured reflections 9632 independent reflections 7935 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.159 S = 1.05 9632 reflections 255 parameters H-atom parameters constrained Δρmax = 1.26 e Å−3 Δρmin = −1.68 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810020374/is2554sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020374/is2554Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H24IN3O2F(000) = 984
Mr = 489.34Dx = 1.527 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9944 reflections
a = 11.5235 (10) Åθ = 2.7–35.4°
b = 16.4156 (14) ŵ = 1.53 mm1
c = 11.2828 (9) ÅT = 100 K
β = 94.010 (2)°Blcok, yellow
V = 2129.1 (3) Å30.41 × 0.34 × 0.29 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer9632 independent reflections
Radiation source: fine-focus sealed tube7935 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 35.6°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −16→18
Tmin = 0.571, Tmax = 0.663k = −26→26
36214 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1027P)2 + 1.5532P] where P = (Fo2 + 2Fc2)/3
9632 reflections(Δ/σ)max = 0.001
255 parametersΔρmax = 1.26 e Å3
0 restraintsΔρmin = −1.68 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.290561 (14)0.362436 (10)0.802978 (17)0.03475 (7)
O10.68399 (13)0.05872 (8)0.94462 (12)0.0192 (2)
O20.71122 (14)0.22745 (9)0.66181 (13)0.0206 (2)
N10.76696 (14)−0.05557 (10)1.03829 (14)0.0182 (3)
N20.87138 (14)−0.09878 (10)1.03161 (15)0.0200 (3)
N30.89080 (14)0.03071 (9)0.78003 (13)0.0163 (2)
C10.78638 (19)−0.05051 (15)1.25448 (18)0.0266 (4)
H1A0.8669−0.05311.25310.032*
C20.7339 (2)−0.04626 (17)1.36239 (19)0.0315 (5)
H2A0.7798−0.04611.43360.038*
C30.6135 (2)−0.04230 (14)1.3637 (2)0.0275 (4)
H3A0.5791−0.03951.43570.033*
C40.54450 (18)−0.04253 (12)1.25739 (19)0.0232 (3)
H4A0.4640−0.03921.25860.028*
C50.59526 (17)−0.04769 (11)1.14967 (18)0.0199 (3)
H5A0.5492−0.04901.07860.024*
C60.71592 (17)−0.05082 (11)1.14923 (16)0.0186 (3)
C70.92082 (16)−0.07340 (11)0.93152 (15)0.0172 (3)
C80.85924 (15)−0.00877 (10)0.88180 (15)0.0156 (3)
C90.75980 (16)0.00540 (10)0.95158 (15)0.0161 (3)
C100.82737 (16)0.09014 (10)0.73798 (15)0.0166 (3)
H10A0.76650.10920.78030.020*
C110.85006 (16)0.12799 (10)0.62451 (15)0.0160 (3)
C120.93106 (16)0.09552 (11)0.55089 (16)0.0184 (3)
H12A0.97680.05160.57750.022*
C130.94457 (18)0.12744 (12)0.43891 (17)0.0209 (3)
H13A0.99950.10570.39120.025*
C140.87488 (18)0.19228 (12)0.39885 (16)0.0210 (3)
H14A0.88140.21240.32260.025*
C150.79573 (17)0.22751 (11)0.47051 (16)0.0195 (3)
H15A0.75100.27170.44320.023*
C160.78371 (16)0.19599 (10)0.58414 (15)0.0167 (3)
C170.64112 (18)0.29607 (12)0.62471 (18)0.0224 (3)
H17A0.58860.28130.55720.027*
H17B0.69020.34030.60100.027*
C180.57265 (18)0.32256 (11)0.72692 (19)0.0229 (3)
H18A0.52200.36730.70100.027*
H18B0.62620.34260.79050.027*
C190.49946 (19)0.25498 (12)0.7752 (2)0.0244 (3)
H19A0.45050.23190.71030.029*
H19B0.55060.21220.80720.029*
C200.4233 (2)0.28321 (15)0.8710 (2)0.0301 (4)
H20A0.47090.31110.93270.036*
H20B0.38840.23620.90660.036*
C210.8675 (2)−0.18482 (14)1.0635 (2)0.0313 (5)
H21A0.9438−0.20801.06130.047*
H21B0.8147−0.21291.00800.047*
H21C0.8414−0.19021.14210.047*
C221.02298 (18)−0.11555 (13)0.88815 (18)0.0223 (3)
H22A1.0828−0.11960.95150.033*
H22B1.0517−0.08520.82360.033*
H22C1.0008−0.16920.86120.033*
U11U22U33U12U13U23
I10.02522 (9)0.03191 (10)0.04766 (12)0.00818 (5)0.00638 (7)0.01372 (6)
O10.0219 (6)0.0172 (5)0.0185 (5)0.0063 (4)0.0021 (4)0.0012 (4)
O20.0269 (7)0.0163 (5)0.0188 (5)0.0067 (5)0.0033 (5)0.0036 (4)
N10.0186 (6)0.0191 (6)0.0169 (6)0.0048 (5)0.0018 (5)0.0040 (5)
N20.0181 (6)0.0195 (6)0.0224 (7)0.0051 (5)0.0023 (5)0.0069 (5)
N30.0184 (6)0.0155 (6)0.0147 (6)0.0014 (5)−0.0003 (4)0.0013 (4)
C10.0213 (8)0.0392 (11)0.0191 (8)−0.0067 (7)0.0002 (6)0.0047 (7)
C20.0296 (10)0.0457 (13)0.0192 (8)−0.0092 (9)0.0020 (7)0.0032 (8)
C30.0321 (10)0.0283 (9)0.0232 (8)−0.0054 (8)0.0091 (7)−0.0004 (7)
C40.0233 (8)0.0184 (7)0.0288 (9)0.0010 (6)0.0076 (7)0.0021 (6)
C50.0197 (7)0.0165 (7)0.0234 (8)0.0014 (5)0.0012 (6)0.0012 (6)
C60.0200 (7)0.0182 (7)0.0177 (7)−0.0004 (5)0.0020 (5)0.0031 (5)
C70.0181 (7)0.0169 (6)0.0162 (6)0.0029 (5)−0.0003 (5)0.0028 (5)
C80.0174 (6)0.0146 (6)0.0145 (6)0.0020 (5)−0.0001 (5)0.0010 (5)
C90.0190 (7)0.0143 (6)0.0149 (6)0.0017 (5)−0.0002 (5)0.0008 (5)
C100.0206 (7)0.0139 (6)0.0151 (6)0.0016 (5)0.0005 (5)0.0006 (5)
C110.0187 (7)0.0137 (6)0.0153 (6)−0.0002 (5)−0.0008 (5)0.0002 (5)
C120.0204 (7)0.0184 (7)0.0162 (6)0.0021 (6)−0.0001 (5)−0.0001 (5)
C130.0223 (8)0.0235 (8)0.0169 (7)−0.0005 (6)0.0027 (6)0.0009 (6)
C140.0227 (8)0.0232 (8)0.0169 (7)−0.0017 (6)0.0007 (6)0.0042 (6)
C150.0209 (7)0.0187 (7)0.0186 (7)−0.0012 (6)−0.0009 (6)0.0050 (5)
C160.0199 (7)0.0138 (6)0.0162 (6)−0.0010 (5)−0.0001 (5)0.0006 (5)
C170.0257 (8)0.0170 (7)0.0245 (8)0.0053 (6)0.0026 (6)0.0055 (6)
C180.0246 (8)0.0137 (6)0.0304 (9)0.0020 (6)0.0024 (7)0.0009 (6)
C190.0252 (8)0.0172 (7)0.0310 (9)0.0018 (6)0.0025 (7)0.0036 (6)
C200.0298 (10)0.0298 (10)0.0314 (10)0.0106 (8)0.0063 (8)0.0122 (8)
C210.0305 (10)0.0227 (9)0.0418 (12)0.0084 (8)0.0110 (9)0.0154 (8)
C220.0210 (8)0.0219 (7)0.0243 (8)0.0062 (6)0.0031 (6)0.0024 (6)
I1—C202.111 (2)C11—C121.398 (3)
O1—C91.235 (2)C11—C161.410 (2)
O2—C161.355 (2)C12—C131.387 (3)
O2—C171.432 (2)C12—H12A0.9300
N1—C91.398 (2)C13—C141.390 (3)
N1—N21.403 (2)C13—H13A0.9300
N1—C61.422 (2)C14—C151.387 (3)
N2—C71.365 (2)C14—H14A0.9300
N2—C211.459 (3)C15—C161.398 (2)
N3—C101.289 (2)C15—H15A0.9300
N3—C81.389 (2)C17—C181.506 (3)
C1—C61.391 (3)C17—H17A0.9700
C1—C21.398 (3)C17—H17B0.9700
C1—H1A0.9300C18—C191.518 (3)
C2—C31.390 (3)C18—H18A0.9700
C2—H2A0.9300C18—H18B0.9700
C3—C41.392 (3)C19—C201.512 (3)
C3—H3A0.9300C19—H19A0.9700
C4—C51.388 (3)C19—H19B0.9700
C4—H4A0.9300C20—H20A0.9700
C5—C61.392 (3)C20—H20B0.9700
C5—H5A0.9300C21—H21A0.9600
C7—C81.374 (2)C21—H21B0.9600
C7—C221.478 (3)C21—H21C0.9600
C8—C91.454 (2)C22—H22A0.9600
C10—C111.463 (2)C22—H22B0.9600
C10—H10A0.9300C22—H22C0.9600
C16—O2—C17118.14 (15)C14—C13—H13A120.4
C9—N1—N2109.46 (14)C15—C14—C13121.23 (17)
C9—N1—C6124.67 (15)C15—C14—H14A119.4
N2—N1—C6118.95 (15)C13—C14—H14A119.4
C7—N2—N1107.41 (14)C14—C15—C16119.45 (17)
C7—N2—C21121.40 (17)C14—C15—H15A120.3
N1—N2—C21115.78 (16)C16—C15—H15A120.3
C10—N3—C8118.86 (15)O2—C16—C15123.87 (16)
C6—C1—C2118.8 (2)O2—C16—C11115.96 (15)
C6—C1—H1A120.6C15—C16—C11120.17 (17)
C2—C1—H1A120.6O2—C17—C18108.56 (15)
C3—C2—C1120.3 (2)O2—C17—H17A110.0
C3—C2—H2A119.9C18—C17—H17A110.0
C1—C2—H2A119.9O2—C17—H17B110.0
C2—C3—C4120.08 (19)C18—C17—H17B110.0
C2—C3—H3A120.0H17A—C17—H17B108.4
C4—C3—H3A120.0C17—C18—C19113.44 (16)
C5—C4—C3120.3 (2)C17—C18—H18A108.9
C5—C4—H4A119.9C19—C18—H18A108.9
C3—C4—H4A119.9C17—C18—H18B108.9
C4—C5—C6119.19 (18)C19—C18—H18B108.9
C4—C5—H5A120.4H18A—C18—H18B107.7
C6—C5—H5A120.4C20—C19—C18113.41 (18)
C1—C6—C5121.36 (18)C20—C19—H19A108.9
C1—C6—N1119.94 (18)C18—C19—H19A108.9
C5—C6—N1118.69 (17)C20—C19—H19B108.9
N2—C7—C8109.87 (15)C18—C19—H19B108.9
N2—C7—C22121.27 (16)H19A—C19—H19B107.7
C8—C7—C22128.82 (16)C19—C20—I1111.76 (15)
C7—C8—N3122.69 (16)C19—C20—H20A109.3
C7—C8—C9107.86 (15)I1—C20—H20A109.3
N3—C8—C9129.42 (15)C19—C20—H20B109.3
O1—C9—N1123.96 (16)I1—C20—H20B109.3
O1—C9—C8131.28 (16)H20A—C20—H20B107.9
N1—C9—C8104.73 (14)N2—C21—H21A109.5
N3—C10—C11120.79 (16)N2—C21—H21B109.5
N3—C10—H10A119.6H21A—C21—H21B109.5
C11—C10—H10A119.6N2—C21—H21C109.5
C12—C11—C16118.64 (16)H21A—C21—H21C109.5
C12—C11—C10121.71 (16)H21B—C21—H21C109.5
C16—C11—C10119.52 (16)C7—C22—H22A109.5
C13—C12—C11121.30 (17)C7—C22—H22B109.5
C13—C12—H12A119.3H22A—C22—H22B109.5
C11—C12—H12A119.3C7—C22—H22C109.5
C12—C13—C14119.12 (18)H22A—C22—H22C109.5
C12—C13—H13A120.4H22B—C22—H22C109.5
C9—N1—N2—C7−8.6 (2)C6—N1—C9—O1−21.4 (3)
C6—N1—N2—C7−160.89 (17)N2—N1—C9—C86.5 (2)
C9—N1—N2—C21−147.91 (19)C6—N1—C9—C8156.82 (17)
C6—N1—N2—C2159.8 (2)C7—C8—C9—O1175.93 (19)
C6—C1—C2—C3−0.1 (4)N3—C8—C9—O1−6.2 (3)
C1—C2—C3—C40.0 (4)C7—C8—C9—N1−2.11 (19)
C2—C3—C4—C50.8 (3)N3—C8—C9—N1175.74 (17)
C3—C4—C5—C6−1.4 (3)C8—N3—C10—C11−173.62 (16)
C2—C1—C6—C5−0.5 (3)N3—C10—C11—C127.8 (3)
C2—C1—C6—N1−179.6 (2)N3—C10—C11—C16−176.25 (17)
C4—C5—C6—C11.3 (3)C16—C11—C12—C13−1.8 (3)
C4—C5—C6—N1−179.60 (17)C10—C11—C12—C13174.17 (18)
C9—N1—C6—C1−116.1 (2)C11—C12—C13—C14−0.9 (3)
N2—N1—C6—C131.7 (3)C12—C13—C14—C152.6 (3)
C9—N1—C6—C564.8 (3)C13—C14—C15—C16−1.6 (3)
N2—N1—C6—C5−147.45 (18)C17—O2—C16—C151.2 (3)
N1—N2—C7—C87.2 (2)C17—O2—C16—C11−179.42 (17)
C21—N2—C7—C8143.72 (19)C14—C15—C16—O2178.16 (18)
N1—N2—C7—C22−170.71 (17)C14—C15—C16—C11−1.2 (3)
C21—N2—C7—C22−34.2 (3)C12—C11—C16—O2−176.58 (16)
N2—C7—C8—N3178.79 (16)C10—C11—C16—O27.4 (2)
C22—C7—C8—N3−3.5 (3)C12—C11—C16—C152.8 (3)
N2—C7—C8—C9−3.2 (2)C10—C11—C16—C15−173.23 (17)
C22—C7—C8—C9174.55 (19)C16—O2—C17—C18−177.32 (16)
C10—N3—C8—C7178.99 (17)O2—C17—C18—C19−55.7 (2)
C10—N3—C8—C91.4 (3)C17—C18—C19—C20−175.30 (18)
N2—N1—C9—O1−171.71 (17)C18—C19—C20—I167.8 (2)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O10.932.302.995 (2)132
C17—H17B···O1i0.972.423.193 (2)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O10.932.302.995 (2)132
C17—H17B⋯O1i0.972.423.193 (2)137

Symmetry code: (i) .

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5.  State-dependent block of rat Nav1.4 sodium channels expressed in xenopus oocytes by pyrazoline-type insecticides.

Authors:  Kristopher Silver; David M Soderlund
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6.  Synthesis and antimicrobial activity of 1-(4-aryl-2-thiazolyl)-3-(2-thienyl)-5-aryl-2-pyrazoline derivatives.

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7.  Synthesis and biological evaluation of benzo[d]isothiazole, benzothiazole and thiazole Schiff bases.

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Journal:  Bioorg Med Chem       Date:  2003-11-03       Impact factor: 3.641

8.  S-methyldithiocarbazate and its Schiff bases: evaluation of bondings and biological properties.

Authors:  Md Tofazzal Hossain Tarafder; Azahari Kasbollah; N Saravanan; Karen A Crouse; Abdul M Ali; Khor Tin Oo
Journal:  J Biochem Mol Biol Biophys       Date:  2002-04

9.  Structure validation in chemical crystallography.

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  9 in total

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