Literature DB >> 21587498

N-[(4-Amino-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-3-yl)meth-yl]-4-methyl-benzamide.

Hoong-Kun Fun, Chin Sing Yeap, Yatin Mange, Arun M Isloor, Chitrakar Hegde.   

Abstract

In the title compound, C(11)H(13)N(5)OS, the dihedral angle between the triazole ring and the benzene ring is 84.21 (7)°. The amino group adopts a pyramidal configuration. An intra-molecular N-H⋯O hydrogen bond stabilizes the mol-ecular structure and generates an S(8) ring. In the crystal, mol-ecules are linked by inter-molecular N-H⋯O, N-H⋯S, N-H⋯N and C-H⋯S hydrogen bonds into layers lying parallel to the bc plane. The crystal structure is further stabilized by aromatic π-π stacking inter-actions [centroid-centroid distance = 3.3330 (7) Å].

Entities:  

Year:  2010        PMID: 21587498      PMCID: PMC2983242          DOI: 10.1107/S1600536810035014

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of 1,2,4-triazole derivatives, see: Demirbas et al. (2002 ▶, 2004 ▶); Tozkoparan et al. (2000 ▶); Turan-Zitouni et al. (1999 ▶); Kritsanida et al. (2002 ▶); Holla et al. (2002 ▶); Foroumadi et al. (2003 ▶); Isloor et al. (2009 ▶); Shujuan et al. (2004 ▶); Verreck et al. (2003 ▶); Clemons et al. (2004 ▶). For related structures, see: Fun et al. (2009 ▶). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H13N5OS M = 263.32 Monoclinic, a = 14.8148 (1) Å b = 8.6702 (1) Å c = 9.8534 (1) Å β = 104.923 (1)° V = 1222.96 (2) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.30 × 0.27 × 0.11 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.926, T max = 0.972 15018 measured reflections 3555 independent reflections 3142 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.093 S = 1.07 3555 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810035014/hb5629sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810035014/hb5629Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13N5OSF(000) = 552
Mr = 263.32Dx = 1.430 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6908 reflections
a = 14.8148 (1) Åθ = 2.8–32.6°
b = 8.6702 (1) ŵ = 0.26 mm1
c = 9.8534 (1) ÅT = 100 K
β = 104.923 (1)°Block, colourless
V = 1222.96 (2) Å30.30 × 0.27 × 0.11 mm
Z = 4
Bruker SMART APEXII CCD diffractometer3555 independent reflections
Radiation source: fine-focus sealed tube3142 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 30.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→20
Tmin = 0.926, Tmax = 0.972k = −12→11
15018 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0404P)2 + 0.7537P] where P = (Fo2 + 2Fc2)/3
3555 reflections(Δ/σ)max = 0.001
180 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.10394 (2)0.62450 (3)0.66661 (3)0.01567 (9)
O10.25236 (6)1.16404 (11)0.93553 (9)0.01636 (19)
N10.22250 (7)1.27102 (12)0.71802 (11)0.0132 (2)
N20.10834 (7)1.02977 (12)0.49330 (11)0.0126 (2)
N30.10360 (7)0.87126 (12)0.49292 (11)0.0123 (2)
N40.10800 (7)0.93784 (11)0.70210 (10)0.01071 (19)
N50.10633 (8)0.92596 (13)0.84341 (11)0.0144 (2)
C10.44707 (9)1.19963 (16)0.96321 (14)0.0194 (3)
H1A0.42931.11941.01340.023*
C20.54098 (10)1.23546 (18)0.98378 (16)0.0242 (3)
H2A0.58571.17811.04740.029*
C30.56933 (10)1.35571 (18)0.91096 (15)0.0244 (3)
C40.50110 (10)1.44261 (18)0.81922 (15)0.0244 (3)
H4A0.51881.52580.77240.029*
C50.40675 (9)1.40711 (16)0.79637 (14)0.0196 (3)
H5A0.36201.46550.73380.024*
C60.37934 (9)1.28382 (14)0.86742 (13)0.0147 (2)
C70.27951 (8)1.23533 (14)0.84421 (13)0.0130 (2)
C80.12391 (8)1.22850 (13)0.67896 (13)0.0126 (2)
H8A0.08961.29960.60840.015*
H8B0.09901.23620.76060.015*
C90.11102 (8)1.06742 (13)0.62240 (12)0.0110 (2)
C100.10403 (8)0.81094 (13)0.61801 (12)0.0115 (2)
C110.67179 (11)1.3904 (2)0.9308 (2)0.0371 (4)
H11A0.70381.38101.02840.056*
H11B0.67891.49360.89960.056*
H11C0.69781.31880.87690.056*
H1N10.2453 (12)1.299 (2)0.6521 (18)0.020 (4)*
H1N30.1054 (13)0.822 (2)0.419 (2)0.031 (5)*
H1N50.1532 (13)0.975 (2)0.8901 (19)0.025 (5)*
H2N50.0541 (12)0.970 (2)0.8501 (17)0.016 (4)*
U11U22U33U12U13U23
S10.02516 (17)0.00896 (14)0.01334 (15)−0.00100 (11)0.00578 (12)−0.00009 (10)
O10.0186 (4)0.0182 (4)0.0122 (4)−0.0036 (3)0.0038 (3)0.0004 (3)
N10.0147 (5)0.0127 (5)0.0120 (5)−0.0028 (4)0.0030 (4)0.0000 (4)
N20.0135 (5)0.0108 (4)0.0127 (5)−0.0002 (4)0.0020 (4)0.0006 (4)
N30.0154 (5)0.0106 (4)0.0112 (5)0.0000 (4)0.0039 (4)−0.0009 (4)
N40.0127 (4)0.0094 (4)0.0094 (4)−0.0003 (3)0.0018 (3)0.0000 (3)
N50.0197 (5)0.0143 (5)0.0098 (5)−0.0010 (4)0.0046 (4)−0.0009 (4)
C10.0188 (6)0.0188 (6)0.0193 (6)−0.0019 (5)0.0023 (5)−0.0002 (5)
C20.0160 (6)0.0269 (7)0.0259 (7)0.0013 (5)−0.0014 (5)−0.0030 (6)
C30.0165 (6)0.0337 (8)0.0237 (7)−0.0067 (5)0.0063 (5)−0.0097 (6)
C40.0233 (7)0.0312 (7)0.0192 (7)−0.0125 (6)0.0063 (5)−0.0019 (5)
C50.0203 (6)0.0221 (6)0.0155 (6)−0.0047 (5)0.0026 (5)0.0016 (5)
C60.0150 (5)0.0155 (5)0.0138 (5)−0.0019 (4)0.0038 (4)−0.0025 (4)
C70.0153 (5)0.0105 (5)0.0132 (5)−0.0002 (4)0.0034 (4)−0.0018 (4)
C80.0130 (5)0.0100 (5)0.0143 (5)0.0006 (4)0.0024 (4)−0.0006 (4)
C90.0106 (5)0.0097 (5)0.0121 (5)0.0004 (4)0.0016 (4)0.0015 (4)
C100.0114 (5)0.0112 (5)0.0114 (5)0.0007 (4)0.0019 (4)−0.0001 (4)
C110.0182 (7)0.0538 (11)0.0405 (10)−0.0117 (7)0.0099 (7)−0.0131 (8)
S1—C101.6860 (12)C1—H1A0.9300
O1—C71.2409 (15)C2—C31.390 (2)
N1—C71.3469 (16)C2—H2A0.9300
N1—C81.4587 (15)C3—C41.391 (2)
N1—H1N10.843 (18)C3—C111.510 (2)
N2—C91.3040 (15)C4—C51.3919 (19)
N2—N31.3761 (14)C4—H4A0.9300
N3—C101.3375 (15)C5—C61.3942 (18)
N3—H1N30.85 (2)C5—H5A0.9300
N4—C101.3695 (15)C6—C71.4974 (17)
N4—C91.3780 (14)C8—C91.4975 (16)
N4—N51.4028 (14)C8—H8A0.9700
N5—H1N50.84 (2)C8—H8B0.9700
N5—H2N50.880 (17)C11—H11A0.9600
C1—C21.3885 (19)C11—H11B0.9600
C1—C61.3938 (18)C11—H11C0.9600
C7—N1—C8122.19 (10)C4—C5—H5A120.0
C7—N1—H1N1119.9 (12)C6—C5—H5A120.0
C8—N1—H1N1116.3 (12)C1—C6—C5119.31 (12)
C9—N2—N3103.97 (9)C1—C6—C7117.83 (11)
C10—N3—N2113.57 (10)C5—C6—C7122.85 (12)
C10—N3—H1N3126.8 (14)O1—C7—N1122.72 (11)
N2—N3—H1N3119.4 (14)O1—C7—C6121.40 (11)
C10—N4—C9108.24 (10)N1—C7—C6115.87 (10)
C10—N4—N5122.18 (10)N1—C8—C9110.91 (9)
C9—N4—N5129.57 (10)N1—C8—H8A109.5
N4—N5—H1N5106.3 (12)C9—C8—H8A109.5
N4—N5—H2N5106.4 (11)N1—C8—H8B109.5
H1N5—N5—H2N5110.9 (17)C9—C8—H8B109.5
C2—C1—C6120.09 (13)H8A—C8—H8B108.0
C2—C1—H1A120.0N2—C9—N4110.76 (10)
C6—C1—H1A120.0N2—C9—C8124.43 (10)
C1—C2—C3121.12 (14)N4—C9—C8124.61 (10)
C1—C2—H2A119.4N3—C10—N4103.45 (10)
C3—C2—H2A119.4N3—C10—S1129.53 (9)
C2—C3—C4118.42 (13)N4—C10—S1126.98 (9)
C2—C3—C11120.65 (15)C3—C11—H11A109.5
C4—C3—C11120.93 (15)C3—C11—H11B109.5
C3—C4—C5121.10 (13)H11A—C11—H11B109.5
C3—C4—H4A119.4C3—C11—H11C109.5
C5—C4—H4A119.4H11A—C11—H11C109.5
C4—C5—C6119.90 (13)H11B—C11—H11C109.5
C9—N2—N3—C10−0.49 (13)C5—C6—C7—N125.57 (17)
C6—C1—C2—C30.5 (2)C7—N1—C8—C9−84.82 (13)
C1—C2—C3—C41.7 (2)N3—N2—C9—N4−0.06 (12)
C1—C2—C3—C11−178.05 (14)N3—N2—C9—C8175.06 (10)
C2—C3—C4—C5−2.4 (2)C10—N4—C9—N20.57 (13)
C11—C3—C4—C5177.38 (14)N5—N4—C9—N2−177.73 (11)
C3—C4—C5—C60.8 (2)C10—N4—C9—C8−174.55 (11)
C2—C1—C6—C5−2.1 (2)N5—N4—C9—C87.15 (19)
C2—C1—C6—C7177.06 (12)N1—C8—C9—N2−82.22 (14)
C4—C5—C6—C11.5 (2)N1—C8—C9—N492.24 (13)
C4—C5—C6—C7−177.69 (12)N2—N3—C10—N40.81 (13)
C8—N1—C7—O10.08 (18)N2—N3—C10—S1−177.08 (9)
C8—N1—C7—C6178.70 (10)C9—N4—C10—N3−0.81 (12)
C1—C6—C7—O125.05 (17)N5—N4—C10—N3177.64 (10)
C5—C6—C7—O1−155.80 (13)C9—N4—C10—S1177.16 (9)
C1—C6—C7—N1−153.59 (12)N5—N4—C10—S1−4.39 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1i0.841 (18)2.187 (17)2.9824 (14)157.7 (17)
N3—H1N3···S1ii0.851 (19)2.524 (19)3.2168 (11)139.2 (15)
N3—H1N3···N5ii0.851 (19)2.276 (18)2.9738 (15)139.3 (16)
N5—H1N5···O10.843 (19)2.169 (18)2.9587 (15)155.9 (16)
N5—H2N5···S1iii0.880 (18)2.666 (18)3.5381 (12)171.2 (14)
C8—H8A···S1iv0.972.873.4456 (12)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O1i0.841 (18)2.187 (17)2.9824 (14)157.7 (17)
N3—H1N3⋯S1ii0.851 (19)2.524 (19)3.2168 (11)139.2 (15)
N3—H1N3⋯N5ii0.851 (19)2.276 (18)2.9738 (15)139.3 (16)
N5—H1N5⋯O10.843 (19)2.169 (18)2.9587 (15)155.9 (16)
N5—H2N5⋯S1iii0.880 (18)2.666 (18)3.5381 (12)171.2 (14)
C8—H8A⋯S1iv0.972.873.4456 (12)119

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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