Literature DB >> 21583604

4-Amino-3-(p-tolyl-oxymeth-yl)-1H-1,2,4-triazole-5(4H)-thione.

Hoong-Kun Fun, Jia Hao Goh, A M Vijesh, Mahesh Padaki, Arun M Isloor.   

Abstract

In the title triazole compound, C(10)H(12)N(4)OS, the triazole ring is essentially planar [maximum deviation = 0.009 (1) Å] and forms a dihedral angle of 5.78 (4)° with the benzene ring. In the crystal structure, mol-ecules are linked into dimers by centrosymmetric N-H⋯S inter-actions. These dimers are linked into two-mol-ecule-wide tapes by N-H⋯N and S⋯S [3.2634 (3) Å] inter-actions. In addition, they are further inter-connected by weak N-H⋯S inter-actions into sheets parallel to the ab plane. The crystal structure is further stabilized by weak inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583604      PMCID: PMC2977210          DOI: 10.1107/S1600536809027664

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of triazole derivatives, see: Amir et al. (2008 ▶); Kuş et al. (2008 ▶); Krzysztof et al. (2008 ▶); Padmavathi et al. (2008 ▶). For the preparation, see: Conti (1964 ▶). For related structures, see: Fun et al. (2008 ▶, 2009 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H12N4OS M = 236.30 Triclinic, a = 5.9977 (1) Å b = 6.4002 (1) Å c = 15.5506 (2) Å α = 89.352 (1)° β = 83.157 (1)° γ = 65.562 (1)° V = 539.11 (1) Å3 Z = 2 Mo Kα radiation μ = 0.28 mm−1 T = 100 K 0.47 × 0.30 × 0.09 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.878, T max = 0.975 19910 measured reflections 4712 independent reflections 4228 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.095 S = 1.05 4712 reflections 193 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809027664/tk2497sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027664/tk2497Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12N4OSZ = 2
Mr = 236.30F(000) = 248
Triclinic, P1Dx = 1.456 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.9977 (1) ÅCell parameters from 9925 reflections
b = 6.4002 (1) Åθ = 2.6–35.2°
c = 15.5506 (2) ŵ = 0.28 mm1
α = 89.352 (1)°T = 100 K
β = 83.157 (1)°Plate, colourless
γ = 65.562 (1)°0.47 × 0.30 × 0.09 mm
V = 539.11 (1) Å3
Bruker SMART APEXII CCD area-detector diffractometer4712 independent reflections
Radiation source: fine-focus sealed tube4228 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 35.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.878, Tmax = 0.975k = −10→10
19910 measured reflectionsl = −25→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0648P)2 + 0.0513P] where P = (Fo2 + 2Fc2)/3
4712 reflections(Δ/σ)max = 0.001
193 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.33 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.84328 (3)0.26155 (3)0.040453 (11)0.01525 (6)
O10.06661 (10)1.12912 (9)0.24927 (4)0.01568 (10)
N10.49686 (12)0.89098 (11)0.14036 (4)0.01591 (11)
N20.69184 (11)0.71323 (11)0.09371 (4)0.01581 (11)
H1N20.820 (2)0.732 (2)0.0596 (9)0.024 (3)*
N30.43624 (11)0.57330 (10)0.13942 (4)0.01199 (10)
N40.30133 (12)0.43979 (11)0.15295 (4)0.01506 (11)
H1N40.405 (2)0.293 (3)0.1674 (9)0.023 (3)*
H2N40.258 (3)0.419 (3)0.1018 (10)0.035 (4)*
C10.66067 (12)0.51754 (12)0.09031 (4)0.01305 (11)
C20.34451 (12)0.79838 (12)0.16710 (4)0.01274 (11)
C30.09665 (12)0.91116 (11)0.21854 (5)0.01325 (11)
H3A−0.034 (2)0.927 (2)0.1804 (8)0.018 (3)*
H3B0.086 (2)0.808 (2)0.2649 (8)0.016 (3)*
C4−0.16049 (12)1.26194 (12)0.29390 (4)0.01307 (12)
C5−0.34570 (13)1.18698 (13)0.31707 (5)0.01573 (12)
H5A−0.333 (2)1.039 (2)0.2991 (9)0.026 (3)*
C6−0.56524 (13)1.33505 (13)0.36639 (5)0.01718 (13)
H6A−0.682 (3)1.275 (2)0.3802 (9)0.027 (3)*
C7−0.60421 (13)1.55609 (12)0.39238 (5)0.01587 (13)
C8−0.41667 (15)1.62850 (13)0.36627 (5)0.01808 (13)
H8A−0.443 (3)1.785 (3)0.3837 (9)0.028 (3)*
C9−0.19792 (14)1.48515 (12)0.31738 (5)0.01693 (13)
H9A−0.070 (3)1.533 (3)0.2975 (10)0.031 (4)*
C10−0.83720 (14)1.71372 (15)0.44753 (5)0.02093 (15)
H10A−0.902 (3)1.871 (3)0.4283 (11)0.042 (4)*
H10B−0.971 (3)1.672 (3)0.4484 (11)0.046 (4)*
H10C−0.807 (3)1.720 (3)0.5070 (12)0.049 (5)*
U11U22U33U12U13U23
S10.01469 (9)0.01076 (8)0.01619 (9)−0.00247 (6)0.00295 (6)−0.00124 (6)
O10.0137 (2)0.0113 (2)0.0208 (2)−0.00540 (17)0.00364 (18)−0.00495 (18)
N10.0146 (2)0.0125 (2)0.0193 (3)−0.0056 (2)0.0033 (2)−0.0034 (2)
N20.0138 (2)0.0134 (2)0.0194 (3)−0.0062 (2)0.0036 (2)−0.0032 (2)
N30.0118 (2)0.0090 (2)0.0141 (2)−0.00392 (18)0.00088 (18)−0.00093 (18)
N40.0165 (3)0.0110 (2)0.0186 (3)−0.0073 (2)0.0007 (2)0.0000 (2)
C10.0118 (2)0.0120 (3)0.0136 (3)−0.0037 (2)0.0004 (2)−0.0002 (2)
C20.0130 (2)0.0099 (2)0.0139 (3)−0.0038 (2)0.0002 (2)−0.0013 (2)
C30.0126 (3)0.0095 (2)0.0156 (3)−0.0035 (2)0.0018 (2)−0.0025 (2)
C40.0125 (3)0.0106 (3)0.0143 (3)−0.0035 (2)0.0008 (2)−0.0015 (2)
C50.0140 (3)0.0128 (3)0.0195 (3)−0.0055 (2)0.0011 (2)−0.0024 (2)
C60.0134 (3)0.0163 (3)0.0199 (3)−0.0051 (2)0.0015 (2)−0.0026 (2)
C70.0141 (3)0.0143 (3)0.0147 (3)−0.0017 (2)−0.0003 (2)−0.0011 (2)
C80.0192 (3)0.0113 (3)0.0204 (3)−0.0041 (2)0.0018 (2)−0.0028 (2)
C90.0179 (3)0.0117 (3)0.0201 (3)−0.0064 (2)0.0028 (2)−0.0026 (2)
C100.0164 (3)0.0199 (3)0.0193 (3)−0.0011 (3)0.0014 (2)−0.0041 (3)
S1—C11.6812 (7)C4—C51.3913 (10)
O1—C41.3746 (8)C4—C91.3970 (10)
O1—C31.4119 (9)C5—C61.4012 (10)
N1—C21.3080 (9)C5—H5A0.962 (14)
N1—N21.3798 (9)C6—C71.3915 (10)
N2—C11.3432 (9)C6—H6A0.930 (14)
N2—H1N20.932 (13)C7—C81.4011 (11)
N3—C21.3657 (9)C7—C101.5078 (10)
N3—C11.3734 (9)C8—C91.3868 (10)
N3—N41.3988 (8)C8—H8A0.984 (14)
N4—H1N40.928 (14)C9—H9A0.959 (14)
N4—H2N40.894 (15)C10—H10A0.975 (17)
C2—C31.4875 (9)C10—H10B0.944 (17)
C3—H3A1.011 (12)C10—H10C0.968 (18)
C3—H3B0.986 (12)
C4—O1—C3115.53 (5)O1—C4—C9115.49 (6)
C2—N1—N2103.33 (6)C5—C4—C9119.96 (6)
C1—N2—N1113.75 (6)C4—C5—C6119.23 (7)
C1—N2—H1N2121.9 (9)C4—C5—H5A122.9 (8)
N1—N2—H1N2123.5 (9)C6—C5—H5A117.8 (8)
C2—N3—C1108.49 (6)C7—C6—C5121.82 (7)
C2—N3—N4122.95 (6)C7—C6—H6A122.7 (9)
C1—N3—N4128.18 (6)C5—C6—H6A115.4 (9)
N3—N4—H1N4109.3 (8)C6—C7—C8117.60 (7)
N3—N4—H2N4107.2 (10)C6—C7—C10122.01 (7)
H1N4—N4—H2N4104.5 (13)C8—C7—C10120.39 (7)
N2—C1—N3102.99 (6)C9—C8—C7121.62 (7)
N2—C1—S1130.61 (6)C9—C8—H8A120.1 (8)
N3—C1—S1126.40 (5)C7—C8—H8A118.3 (8)
N1—C2—N3111.41 (6)C8—C9—C4119.73 (7)
N1—C2—C3127.78 (6)C8—C9—H9A122.7 (9)
N3—C2—C3120.78 (6)C4—C9—H9A117.5 (9)
O1—C3—C2108.32 (6)C7—C10—H10A112.9 (10)
O1—C3—H3A110.4 (7)C7—C10—H10B114.7 (11)
C2—C3—H3A109.3 (7)H10A—C10—H10B104.2 (14)
O1—C3—H3B113.9 (7)C7—C10—H10C110.4 (11)
C2—C3—H3B107.8 (7)H10A—C10—H10C107.1 (14)
H3A—C3—H3B107.0 (10)H10B—C10—H10C107.1 (15)
O1—C4—C5124.54 (6)
C2—N1—N2—C10.94 (8)N1—C2—C3—O1−11.09 (10)
N1—N2—C1—N3−1.56 (8)N3—C2—C3—O1171.04 (6)
N1—N2—C1—S1178.86 (6)C3—O1—C4—C56.66 (10)
C2—N3—C1—N21.55 (8)C3—O1—C4—C9−174.38 (6)
N4—N3—C1—N2174.57 (7)O1—C4—C5—C6176.82 (7)
C2—N3—C1—S1−178.85 (5)C9—C4—C5—C6−2.10 (11)
N4—N3—C1—S1−5.83 (11)C4—C5—C6—C70.49 (12)
N2—N1—C2—N30.13 (8)C5—C6—C7—C81.01 (11)
N2—N1—C2—C3−177.90 (7)C5—C6—C7—C10−178.28 (7)
C1—N3—C2—N1−1.10 (8)C6—C7—C8—C9−0.94 (12)
N4—N3—C2—N1−174.56 (6)C10—C7—C8—C9178.36 (7)
C1—N3—C2—C3177.09 (6)C7—C8—C9—C4−0.64 (12)
N4—N3—C2—C33.62 (10)O1—C4—C9—C8−176.84 (7)
C4—O1—C3—C2176.18 (6)C5—C4—C9—C82.18 (12)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···S1i0.930 (13)2.412 (13)3.3364 (7)172.5 (11)
N4—H1N4···N1ii0.930 (17)2.428 (17)3.2100 (9)141.6 (12)
N4—H2N4···S1iii0.894 (15)2.937 (16)3.5456 (7)126.8 (12)
C10—H10C···Cg2iv0.968 (18)2.697 (19)3.6250 (9)160.8 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯S1i0.930 (13)2.412 (13)3.3364 (7)172.5 (11)
N4—H1N4⋯N1ii0.930 (17)2.428 (17)3.2100 (9)141.6 (12)
N4—H2N4⋯S1iii0.894 (15)2.937 (16)3.5456 (7)126.8 (12)
C10—H10CCg2iv0.968 (18)2.697 (19)3.6250 (9)160.8 (14)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 is the centroid of the C4–C9 ring.

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1.  N-[(4-Amino-5-sulfanyl-idene-4,5-dihydro-1H-1,2,4-triazol-3-yl)meth-yl]-4-methyl-benzamide.

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