| Literature DB >> 21577614 |
Hoong-Kun Fun, Chin Sing Yeap, Shridhar Malladi, Mahesh Padaki, Arun M Isloor.
Abstract
The mol-ecule of the title compound, C(10)H(13)N(5)OS, is approximately planar, the dihedral angle between the triazole and benzene rings being 4.53 (10)°. The amino group adopts a pyramidal configuration. In the crystal structure, mol-ecules are linked into two-dimensional networks parallel to (001) by inter-molecular N-H⋯S and N-H⋯N hydrogen bonds. In addition, an S⋯S short contact of 3.3435 (7) Å is observed.Entities:
Year: 2009 PMID: 21577614 PMCID: PMC2969966 DOI: 10.1107/S1600536809032607
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H13N5OS | |
| Monoclinic, | Mo |
| Hall symbol: C 2y | Cell parameters from 2961 reflections |
| θ = 3.6–32.2° | |
| µ = 0.28 mm−1 | |
| β = 95.292 (1)° | Plate, colourless |
| 0.33 × 0.18 × 0.02 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2365 independent reflections |
| Radiation source: fine-focus sealed tube | 2126 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 3.6° |
| Absorption correction: multi-scan ( | |
| 5827 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2365 reflections | Δρmax = 0.33 e Å−3 |
| 171 parameters | Δρmin = −0.25 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 588 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.03 (7) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.37035 (4) | 0.34412 (9) | 0.03759 (3) | 0.01571 (11) | |
| O1 | −0.26796 (11) | 1.2919 (3) | 0.42305 (8) | 0.0248 (4) | |
| N1 | 0.07536 (13) | 0.3929 (3) | 0.13658 (9) | 0.0171 (4) | |
| N2 | 0.15394 (14) | 0.2872 (3) | 0.09067 (10) | 0.0164 (4) | |
| N3 | 0.23563 (13) | 0.5947 (3) | 0.13167 (9) | 0.0136 (3) | |
| N4 | −0.02128 (14) | 0.6826 (3) | 0.24608 (10) | 0.0167 (4) | |
| N5 | 0.30984 (14) | 0.7845 (3) | 0.14247 (10) | 0.0171 (4) | |
| C1 | 0.25184 (15) | 0.4074 (3) | 0.08580 (11) | 0.0144 (4) | |
| C2 | 0.12844 (15) | 0.5803 (4) | 0.16083 (11) | 0.0138 (4) | |
| C3 | 0.08129 (16) | 0.7617 (4) | 0.21027 (12) | 0.0158 (4) | |
| H3A | 0.1404 | 0.8072 | 0.2524 | 0.019* | |
| H3B | 0.0613 | 0.8933 | 0.1768 | 0.019* | |
| C4 | −0.08548 (14) | 0.8413 (4) | 0.28707 (10) | 0.0146 (3) | |
| C5 | −0.04122 (16) | 1.0556 (4) | 0.31036 (12) | 0.0174 (4) | |
| H5A | 0.0307 | 1.1019 | 0.2950 | 0.021* | |
| C6 | −0.10392 (16) | 1.1985 (4) | 0.35610 (12) | 0.0187 (4) | |
| H6A | −0.0732 | 1.3398 | 0.3715 | 0.022* | |
| C7 | −0.21184 (16) | 1.1350 (4) | 0.37941 (11) | 0.0168 (4) | |
| C8 | −0.25711 (16) | 0.9225 (4) | 0.35578 (11) | 0.0174 (4) | |
| H8A | −0.3295 | 0.8776 | 0.3708 | 0.021* | |
| C9 | −0.19487 (15) | 0.7792 (4) | 0.31039 (11) | 0.0163 (4) | |
| H9A | −0.2261 | 0.6384 | 0.2949 | 0.020* | |
| C10 | −0.37125 (17) | 1.2205 (4) | 0.45705 (12) | 0.0219 (5) | |
| H10A | −0.3982 | 1.3406 | 0.4896 | 0.033* | |
| H10B | −0.3545 | 1.0881 | 0.4897 | 0.033* | |
| H10C | −0.4305 | 1.1848 | 0.4147 | 0.033* | |
| H1N2 | 0.1335 (18) | 0.175 (4) | 0.0617 (13) | 0.016 (6)* | |
| H1N4 | −0.063 (2) | 0.601 (5) | 0.2156 (15) | 0.032 (7)* | |
| H1N5 | 0.381 (2) | 0.728 (5) | 0.1550 (16) | 0.047 (8)* | |
| H2N5 | 0.3141 (19) | 0.845 (6) | 0.0921 (15) | 0.042 (7)* |
| S1 | 0.01344 (18) | 0.0157 (2) | 0.0184 (2) | 0.0019 (2) | 0.00344 (15) | −0.0002 (2) |
| O1 | 0.0220 (7) | 0.0201 (9) | 0.0342 (8) | −0.0015 (6) | 0.0123 (6) | −0.0096 (7) |
| N1 | 0.0157 (7) | 0.0161 (10) | 0.0201 (8) | −0.0007 (7) | 0.0052 (6) | 0.0000 (7) |
| N2 | 0.0186 (7) | 0.0117 (9) | 0.0197 (8) | −0.0021 (6) | 0.0050 (6) | −0.0030 (7) |
| N3 | 0.0126 (7) | 0.0149 (9) | 0.0135 (7) | −0.0008 (6) | 0.0015 (6) | −0.0003 (7) |
| N4 | 0.0150 (8) | 0.0149 (9) | 0.0208 (9) | −0.0039 (7) | 0.0051 (7) | −0.0033 (7) |
| N5 | 0.0142 (7) | 0.0148 (9) | 0.0220 (9) | −0.0050 (6) | 0.0006 (6) | −0.0019 (7) |
| C1 | 0.0143 (8) | 0.0155 (10) | 0.0135 (8) | 0.0025 (7) | 0.0011 (7) | 0.0001 (7) |
| C2 | 0.0132 (8) | 0.0156 (10) | 0.0126 (9) | 0.0022 (7) | 0.0015 (7) | 0.0029 (8) |
| C3 | 0.0151 (8) | 0.0140 (10) | 0.0183 (9) | −0.0012 (7) | 0.0020 (7) | 0.0006 (8) |
| C4 | 0.0153 (7) | 0.0154 (9) | 0.0132 (7) | 0.0032 (9) | 0.0012 (6) | 0.0006 (10) |
| C5 | 0.0139 (9) | 0.0176 (11) | 0.0211 (10) | −0.0015 (8) | 0.0043 (7) | 0.0005 (8) |
| C6 | 0.0188 (9) | 0.0146 (10) | 0.0228 (10) | −0.0027 (8) | 0.0020 (8) | −0.0037 (8) |
| C7 | 0.0174 (9) | 0.0165 (10) | 0.0167 (9) | 0.0015 (8) | 0.0030 (7) | −0.0005 (8) |
| C8 | 0.0157 (9) | 0.0184 (10) | 0.0187 (9) | −0.0014 (8) | 0.0044 (7) | 0.0013 (8) |
| C9 | 0.0163 (8) | 0.0121 (10) | 0.0203 (9) | −0.0024 (7) | 0.0002 (7) | −0.0006 (8) |
| C10 | 0.0177 (9) | 0.0258 (13) | 0.0228 (10) | 0.0016 (9) | 0.0057 (8) | −0.0032 (9) |
| S1—C1 | 1.6883 (18) | C3—H3A | 0.97 |
| O1—C7 | 1.373 (2) | C3—H3B | 0.97 |
| O1—C10 | 1.427 (2) | C4—C5 | 1.401 (3) |
| N1—C2 | 1.306 (3) | C4—C9 | 1.401 (2) |
| N1—N2 | 1.386 (2) | C5—C6 | 1.383 (3) |
| N2—C1 | 1.339 (2) | C5—H5A | 0.93 |
| N2—H1N2 | 0.84 (2) | C6—C7 | 1.387 (3) |
| N3—C1 | 1.364 (3) | C6—H6A | 0.93 |
| N3—C2 | 1.370 (2) | C7—C8 | 1.397 (3) |
| N3—N5 | 1.407 (2) | C8—C9 | 1.377 (3) |
| N4—C4 | 1.407 (3) | C8—H8A | 0.93 |
| N4—C3 | 1.448 (2) | C9—H9A | 0.93 |
| N4—H1N4 | 0.82 (3) | C10—H10A | 0.96 |
| N5—H1N5 | 0.89 (3) | C10—H10B | 0.96 |
| N5—H2N5 | 0.92 (3) | C10—H10C | 0.96 |
| C2—C3 | 1.482 (3) | ||
| C7—O1—C10 | 117.60 (17) | H3A—C3—H3B | 108.1 |
| C2—N1—N2 | 103.83 (15) | C5—C4—C9 | 118.09 (18) |
| C1—N2—N1 | 113.14 (16) | C5—C4—N4 | 122.53 (16) |
| C1—N2—H1N2 | 125.0 (14) | C9—C4—N4 | 119.3 (2) |
| N1—N2—H1N2 | 120.6 (14) | C6—C5—C4 | 120.33 (17) |
| C1—N3—C2 | 108.88 (16) | C6—C5—H5A | 119.8 |
| C1—N3—N5 | 126.84 (15) | C4—C5—H5A | 119.8 |
| C2—N3—N5 | 124.04 (17) | C5—C6—C7 | 121.20 (19) |
| C4—N4—C3 | 118.22 (18) | C5—C6—H6A | 119.4 |
| C4—N4—H1N4 | 112.7 (18) | C7—C6—H6A | 119.4 |
| C3—N4—H1N4 | 112.5 (17) | O1—C7—C6 | 116.46 (18) |
| N3—N5—H1N5 | 105.8 (19) | O1—C7—C8 | 124.69 (17) |
| N3—N5—H2N5 | 105.9 (18) | C6—C7—C8 | 118.83 (18) |
| H1N5—N5—H2N5 | 103 (2) | C9—C8—C7 | 120.19 (17) |
| N2—C1—N3 | 103.45 (15) | C9—C8—H8A | 119.9 |
| N2—C1—S1 | 129.38 (15) | C7—C8—H8A | 119.9 |
| N3—C1—S1 | 127.15 (15) | C8—C9—C4 | 121.4 (2) |
| N1—C2—N3 | 110.68 (18) | C8—C9—H9A | 119.3 |
| N1—C2—C3 | 126.50 (17) | C4—C9—H9A | 119.3 |
| N3—C2—C3 | 122.78 (18) | O1—C10—H10A | 109.5 |
| N4—C3—C2 | 110.69 (17) | O1—C10—H10B | 109.5 |
| N4—C3—H3A | 109.5 | H10A—C10—H10B | 109.5 |
| C2—C3—H3A | 109.5 | O1—C10—H10C | 109.5 |
| N4—C3—H3B | 109.5 | H10A—C10—H10C | 109.5 |
| C2—C3—H3B | 109.5 | H10B—C10—H10C | 109.5 |
| C2—N1—N2—C1 | −0.9 (2) | N3—C2—C3—N4 | −168.35 (17) |
| N1—N2—C1—N3 | 1.1 (2) | C3—N4—C4—C5 | −14.9 (3) |
| N1—N2—C1—S1 | 179.40 (14) | C3—N4—C4—C9 | 169.36 (17) |
| C2—N3—C1—N2 | −0.9 (2) | C9—C4—C5—C6 | 1.0 (3) |
| N5—N3—C1—N2 | −175.43 (17) | N4—C4—C5—C6 | −174.84 (19) |
| C2—N3—C1—S1 | −179.25 (15) | C4—C5—C6—C7 | −0.5 (3) |
| N5—N3—C1—S1 | 6.3 (3) | C10—O1—C7—C6 | −171.73 (18) |
| N2—N1—C2—N3 | 0.2 (2) | C10—O1—C7—C8 | 10.0 (3) |
| N2—N1—C2—C3 | 177.94 (18) | C5—C6—C7—O1 | −178.46 (18) |
| C1—N3—C2—N1 | 0.4 (2) | C5—C6—C7—C8 | −0.1 (3) |
| N5—N3—C2—N1 | 175.13 (17) | O1—C7—C8—C9 | 178.47 (18) |
| C1—N3—C2—C3 | −177.35 (17) | C6—C7—C8—C9 | 0.2 (3) |
| N5—N3—C2—C3 | −2.7 (3) | C7—C8—C9—C4 | 0.2 (3) |
| C4—N4—C3—C2 | −172.48 (15) | C5—C4—C9—C8 | −0.8 (3) |
| N1—C2—C3—N4 | 14.2 (3) | N4—C4—C9—C8 | 175.13 (18) |
| H··· | ||||
| N2—H1N2···S1i | 0.84 (2) | 2.55 (2) | 3.3672 (18) | 164 (2) |
| N4—H1N4···N5ii | 0.82 (3) | 2.60 (3) | 3.410 (2) | 169 (3) |
| N5—H1N5···N1iii | 0.89 (2) | 2.48 (2) | 3.133 (2) | 130 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.84 (2) | 2.55 (2) | 3.3672 (18) | 164 (2) |
| N4—H1 | 0.82 (3) | 2.60 (3) | 3.410 (2) | 169 (3) |
| N5—H1 | 0.89 (2) | 2.48 (2) | 3.133 (2) | 130 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .