Literature DB >> 21584029

3'-Benz-yloxy-3-hydr-oxy-3,3'-bi-1H-indole-2,2'(3H,3'H)-dione monohydrate.

P Ramesh, S S Sundaresan, N Vidhya Lakshmi, Paramasivan T Perumal, M N Ponnuswamy.   

Abstract

In the title compound, C(23)H(18)N(2)O(4)·H(2)O, the two oxindole rings subtend a dihedral angle of 54.29 (5)°. The crystal structure is stabilized by intermolecular N-H⋯O, O-H⋯O and C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21584029      PMCID: PMC2977686          DOI: 10.1107/S1600536809012380

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and pharmaceutical applications of indole derivatives, see: Harris & Uhle (1960 ▶); Ho et al. (1986 ▶); Rajeswaran et al. (1999 ▶); Stevenson et al. (2000 ▶). For description of hydrogen-bond motifs, see Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H18N2O4·H2O M = 404.41 Triclinic, a = 9.8243 (3) Å b = 9.9304 (6) Å c = 11.4460 (5) Å α = 107.517 (2)° β = 114.227 (3)° γ = 93.918 (2)° V = 947.17 (8) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.28 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.972, T max = 0.980 16894 measured reflections 3335 independent reflections 3045 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.084 S = 1.05 3335 reflections 292 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012380/bt2889sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012380/bt2889Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H18N2O4·H2OZ = 2
Mr = 404.41F(000) = 424
Triclinic, P1Dx = 1.418 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.8243 (3) ÅCell parameters from 4635 reflections
b = 9.9304 (6) Åθ = 2.1–25.0°
c = 11.4460 (5) ŵ = 0.10 mm1
α = 107.517 (2)°T = 293 K
β = 114.227 (3)°Block, colourless
γ = 93.918 (2)°0.28 × 0.25 × 0.20 mm
V = 947.17 (8) Å3
Bruker Kappa APEXII area-detector diffractometer3335 independent reflections
Radiation source: fine-focus sealed tube3045 reflections with I > 2σ(I)
graphiteRint = 0.021
ω and φ scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −11→11
Tmin = 0.972, Tmax = 0.980k = −11→11
16894 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.038P)2 + 0.3004P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.003
3335 reflectionsΔρmax = 0.23 e Å3
292 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.038 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.33868 (11)0.37105 (9)0.58225 (10)0.0399 (2)
O20.38716 (10)0.07924 (10)0.53420 (9)0.0335 (2)
H20.381 (2)−0.018 (2)0.504 (2)0.070 (6)*
O30.61939 (10)0.21310 (10)0.48237 (10)0.0374 (2)
O40.33920 (10)0.00510 (8)0.25071 (9)0.0302 (2)
O50.09912 (16)−0.40448 (16)−0.55511 (16)0.0632 (3)
H5B0.183 (4)−0.346 (3)−0.552 (3)0.129 (10)*
H5A0.064 (4)−0.482 (4)−0.622 (3)0.135 (12)*
N10.09503 (13)0.23295 (12)0.47470 (12)0.0349 (3)
H10.0522 (19)0.2945 (18)0.5098 (17)0.048 (4)*
C20.02036 (14)0.08934 (14)0.38791 (13)0.0320 (3)
C3−0.12940 (15)0.02332 (17)0.34058 (15)0.0435 (3)
H3−0.19610.07350.36470.052*
C4−0.17671 (17)−0.12064 (19)0.25573 (16)0.0520 (4)
H4−0.2777−0.16810.22110.062*
C5−0.07767 (19)−0.19539 (17)0.22128 (17)0.0521 (4)
H5−0.1129−0.29210.16320.062*
C60.07409 (17)−0.12838 (15)0.27202 (14)0.0407 (3)
H60.1416−0.17940.25020.049*
C70.12222 (14)0.01554 (13)0.35540 (12)0.0288 (3)
C80.27766 (13)0.11694 (12)0.43061 (12)0.0262 (3)
C90.24378 (14)0.25831 (13)0.50590 (12)0.0286 (3)
C100.33824 (13)0.14368 (12)0.33172 (12)0.0255 (3)
C110.50226 (13)0.24303 (12)0.41187 (12)0.0273 (3)
N120.49318 (12)0.36457 (11)0.38326 (11)0.0305 (2)
H120.5721 (18)0.4358 (17)0.4159 (16)0.042 (4)*
C130.34446 (14)0.36220 (13)0.29098 (12)0.0289 (3)
C140.29438 (16)0.46934 (14)0.24218 (14)0.0382 (3)
H140.36020.55700.27010.046*
C150.14143 (18)0.44063 (16)0.14958 (15)0.0448 (4)
H150.10360.51080.11470.054*
C160.04399 (16)0.31071 (17)0.10790 (15)0.0443 (4)
H16−0.05800.29400.04470.053*
C170.09647 (15)0.20413 (15)0.15937 (13)0.0359 (3)
H170.03070.11640.13140.043*
C180.24816 (14)0.23153 (13)0.25278 (12)0.0277 (3)
C190.40617 (18)0.00789 (15)0.16166 (15)0.0418 (3)
H19A0.51600.04410.21510.050*
H19B0.36490.07190.11310.050*
C200.37193 (14)−0.14144 (13)0.06125 (13)0.0315 (3)
C210.39451 (15)−0.25784 (15)0.10387 (14)0.0370 (3)
H210.4291−0.24400.19630.044*
C220.36598 (19)−0.39435 (16)0.00986 (17)0.0492 (4)
H220.3802−0.47250.03900.059*
C230.3165 (2)−0.41584 (17)−0.12678 (18)0.0573 (4)
H230.2985−0.5080−0.18970.069*
C240.2940 (2)−0.30139 (19)−0.16987 (16)0.0566 (4)
H240.2607−0.3157−0.26230.068*
C250.32036 (17)−0.16459 (17)−0.07653 (15)0.0440 (3)
H250.3033−0.0874−0.10670.053*
U11U22U33U12U13U23
O10.0466 (6)0.0270 (5)0.0427 (5)0.0014 (4)0.0243 (5)0.0037 (4)
O20.0331 (5)0.0333 (5)0.0335 (5)0.0095 (4)0.0121 (4)0.0154 (4)
O30.0245 (5)0.0340 (5)0.0483 (6)0.0061 (4)0.0110 (4)0.0158 (4)
O40.0346 (5)0.0230 (4)0.0360 (5)0.0038 (3)0.0224 (4)0.0061 (4)
O50.0581 (8)0.0594 (8)0.0800 (9)0.0163 (6)0.0439 (7)0.0168 (7)
N10.0346 (6)0.0360 (6)0.0414 (6)0.0138 (5)0.0235 (5)0.0135 (5)
C20.0298 (6)0.0400 (7)0.0316 (6)0.0074 (5)0.0149 (5)0.0187 (6)
C30.0279 (7)0.0621 (9)0.0482 (8)0.0095 (6)0.0179 (6)0.0292 (7)
C40.0302 (7)0.0672 (11)0.0510 (9)−0.0090 (7)0.0111 (7)0.0258 (8)
C50.0502 (9)0.0427 (8)0.0482 (9)−0.0148 (7)0.0180 (7)0.0082 (7)
C60.0428 (8)0.0333 (7)0.0433 (8)−0.0011 (6)0.0219 (7)0.0089 (6)
C70.0282 (6)0.0306 (6)0.0293 (6)0.0026 (5)0.0139 (5)0.0125 (5)
C80.0256 (6)0.0250 (6)0.0283 (6)0.0057 (5)0.0123 (5)0.0096 (5)
C90.0332 (7)0.0277 (6)0.0296 (6)0.0076 (5)0.0174 (5)0.0117 (5)
C100.0247 (6)0.0217 (6)0.0288 (6)0.0041 (4)0.0132 (5)0.0064 (5)
C110.0257 (6)0.0253 (6)0.0304 (6)0.0055 (5)0.0145 (5)0.0070 (5)
N120.0265 (5)0.0251 (5)0.0359 (6)0.0003 (4)0.0123 (5)0.0096 (4)
C130.0311 (6)0.0290 (6)0.0279 (6)0.0066 (5)0.0152 (5)0.0095 (5)
C140.0458 (8)0.0319 (7)0.0389 (7)0.0085 (6)0.0185 (6)0.0164 (6)
C150.0505 (9)0.0480 (8)0.0432 (8)0.0204 (7)0.0189 (7)0.0272 (7)
C160.0328 (7)0.0612 (9)0.0389 (8)0.0134 (7)0.0110 (6)0.0247 (7)
C170.0290 (7)0.0431 (7)0.0334 (7)0.0037 (6)0.0119 (5)0.0151 (6)
C180.0289 (6)0.0293 (6)0.0269 (6)0.0061 (5)0.0152 (5)0.0092 (5)
C190.0520 (8)0.0333 (7)0.0501 (8)0.0037 (6)0.0375 (7)0.0089 (6)
C200.0287 (6)0.0326 (7)0.0353 (7)0.0053 (5)0.0194 (5)0.0084 (5)
C210.0376 (7)0.0400 (7)0.0350 (7)0.0105 (6)0.0179 (6)0.0129 (6)
C220.0611 (10)0.0361 (8)0.0614 (10)0.0175 (7)0.0380 (8)0.0161 (7)
C230.0735 (11)0.0402 (8)0.0540 (10)0.0033 (8)0.0412 (9)−0.0039 (7)
C240.0673 (11)0.0638 (11)0.0328 (8)0.0027 (8)0.0273 (8)0.0056 (7)
C250.0499 (9)0.0494 (8)0.0409 (8)0.0117 (7)0.0253 (7)0.0201 (7)
O1—C91.2191 (15)N12—C131.4016 (16)
O2—C81.4066 (14)N12—H120.877 (16)
O2—H20.91 (2)C13—C141.3747 (18)
O3—C111.2218 (15)C13—C181.3861 (17)
O4—C101.4123 (14)C14—C151.384 (2)
O4—C191.4273 (15)C14—H140.9300
O5—H5B0.96 (3)C15—C161.376 (2)
O5—H5A0.83 (3)C15—H150.9300
N1—C91.3392 (17)C16—C171.391 (2)
N1—C21.4017 (17)C16—H160.9300
N1—H10.860 (18)C17—C181.3783 (18)
C2—C31.3742 (19)C17—H170.9300
C2—C71.3851 (18)C19—C201.4906 (18)
C3—C41.381 (2)C19—H19A0.9700
C3—H30.9300C19—H19B0.9700
C4—C51.375 (2)C20—C251.3808 (19)
C4—H40.9300C20—C211.3816 (19)
C5—C61.387 (2)C21—C221.377 (2)
C5—H50.9300C21—H210.9300
C6—C71.3759 (18)C22—C231.374 (2)
C6—H60.9300C22—H220.9300
C7—C81.5086 (16)C23—C241.366 (3)
C8—C91.5477 (16)C23—H230.9300
C8—C101.5551 (16)C24—C251.380 (2)
C10—C181.5114 (17)C24—H240.9300
C10—C111.5608 (16)C25—H250.9300
C11—N121.3418 (16)
C8—O2—H2110.3 (12)C13—N12—H12123.8 (10)
C10—O4—C19113.84 (9)C14—C13—C18122.68 (12)
H5B—O5—H5A112 (3)C14—C13—N12127.59 (12)
C9—N1—C2111.86 (11)C18—C13—N12109.73 (11)
C9—N1—H1124.2 (11)C13—C14—C15116.90 (13)
C2—N1—H1123.7 (11)C13—C14—H14121.5
C3—C2—C7122.20 (13)C15—C14—H14121.5
C3—C2—N1127.96 (13)C16—C15—C14121.59 (13)
C7—C2—N1109.82 (11)C16—C15—H15119.2
C2—C3—C4117.24 (14)C14—C15—H15119.2
C2—C3—H3121.4C15—C16—C17120.67 (13)
C4—C3—H3121.4C15—C16—H16119.7
C5—C4—C3121.41 (13)C17—C16—H16119.7
C5—C4—H4119.3C18—C17—C16118.49 (12)
C3—C4—H4119.3C18—C17—H17120.8
C4—C5—C6120.82 (14)C16—C17—H17120.8
C4—C5—H5119.6C17—C18—C13119.65 (12)
C6—C5—H5119.6C17—C18—C10131.70 (11)
C7—C6—C5118.33 (14)C13—C18—C10108.63 (10)
C7—C6—H6120.8O4—C19—C20109.22 (10)
C5—C6—H6120.8O4—C19—H19A109.8
C6—C7—C2119.98 (12)C20—C19—H19A109.8
C6—C7—C8131.53 (12)O4—C19—H19B109.8
C2—C7—C8108.41 (10)C20—C19—H19B109.8
O2—C8—C7114.09 (10)H19A—C19—H19B108.3
O2—C8—C9105.88 (9)C25—C20—C21118.92 (12)
C7—C8—C9101.76 (9)C25—C20—C19119.93 (13)
O2—C8—C10111.95 (9)C21—C20—C19121.13 (12)
C7—C8—C10112.73 (9)C22—C21—C20120.20 (13)
C9—C8—C10109.61 (9)C22—C21—H21119.9
O1—C9—N1126.95 (12)C20—C21—H21119.9
O1—C9—C8124.94 (11)C23—C22—C21120.39 (15)
N1—C9—C8108.10 (10)C23—C22—H22119.8
O4—C10—C18115.50 (9)C21—C22—H22119.8
O4—C10—C8105.35 (9)C24—C23—C22119.82 (14)
C18—C10—C8112.18 (9)C24—C23—H23120.1
O4—C10—C11110.65 (9)C22—C23—H23120.1
C18—C10—C11101.56 (9)C23—C24—C25120.11 (14)
C8—C10—C11111.77 (9)C23—C24—H24119.9
O3—C11—N12125.87 (11)C25—C24—H24119.9
O3—C11—C10126.42 (11)C24—C25—C20120.55 (14)
N12—C11—C10107.61 (10)C24—C25—H25119.7
C11—N12—C13112.33 (10)C20—C25—H25119.7
C11—N12—H12123.8 (10)
C9—N1—C2—C3176.59 (13)O4—C10—C11—O3−50.44 (16)
C9—N1—C2—C7−2.02 (15)C18—C10—C11—O3−173.59 (12)
C7—C2—C3—C4−1.4 (2)C8—C10—C11—O366.64 (15)
N1—C2—C3—C4−179.82 (13)O4—C10—C11—N12126.13 (10)
C2—C3—C4—C50.7 (2)C18—C10—C11—N122.99 (12)
C3—C4—C5—C60.6 (2)C8—C10—C11—N12−116.79 (11)
C4—C5—C6—C7−1.3 (2)O3—C11—N12—C13175.33 (12)
C5—C6—C7—C20.7 (2)C10—C11—N12—C13−1.27 (13)
C5—C6—C7—C8177.20 (13)C11—N12—C13—C14178.62 (12)
C3—C2—C7—C60.65 (19)C11—N12—C13—C18−1.22 (14)
N1—C2—C7—C6179.35 (11)C18—C13—C14—C15−1.10 (19)
C3—C2—C7—C8−176.58 (11)N12—C13—C14—C15179.07 (12)
N1—C2—C7—C82.12 (14)C13—C14—C15—C16−0.2 (2)
C6—C7—C8—O2−64.69 (17)C14—C15—C16—C170.8 (2)
C2—C7—C8—O2112.10 (11)C15—C16—C17—C18−0.1 (2)
C6—C7—C8—C9−178.23 (13)C16—C17—C18—C13−1.14 (19)
C2—C7—C8—C9−1.44 (12)C16—C17—C18—C10176.85 (12)
C6—C7—C8—C1064.46 (17)C14—C13—C18—C171.79 (19)
C2—C7—C8—C10−118.75 (11)N12—C13—C18—C17−178.35 (11)
C2—N1—C9—O1−177.54 (12)C14—C13—C18—C10−176.62 (11)
C2—N1—C9—C81.01 (14)N12—C13—C18—C103.23 (13)
O2—C8—C9—O159.33 (15)O4—C10—C18—C1758.38 (17)
C7—C8—C9—O1178.85 (11)C8—C10—C18—C17−62.37 (16)
C10—C8—C9—O1−61.60 (15)C11—C10—C18—C17178.15 (13)
O2—C8—C9—N1−119.26 (10)O4—C10—C18—C13−123.47 (11)
C7—C8—C9—N10.27 (12)C8—C10—C18—C13115.79 (11)
C10—C8—C9—N1119.82 (11)C11—C10—C18—C13−3.70 (12)
C19—O4—C10—C1861.51 (14)C10—O4—C19—C20−168.10 (10)
C19—O4—C10—C8−174.11 (10)O4—C19—C20—C25133.58 (13)
C19—O4—C10—C11−53.14 (13)O4—C19—C20—C21−48.07 (17)
O2—C8—C10—O473.14 (11)C25—C20—C21—C220.1 (2)
C7—C8—C10—O4−57.10 (12)C19—C20—C21—C22−178.29 (13)
C9—C8—C10—O4−169.68 (9)C20—C21—C22—C230.7 (2)
O2—C8—C10—C18−160.41 (9)C21—C22—C23—C24−0.7 (3)
C7—C8—C10—C1869.34 (12)C22—C23—C24—C25−0.1 (3)
C9—C8—C10—C18−43.23 (13)C23—C24—C25—C201.0 (3)
O2—C8—C10—C11−47.09 (13)C21—C20—C25—C24−0.9 (2)
C7—C8—C10—C11−177.34 (9)C19—C20—C25—C24177.44 (14)
C9—C8—C10—C1170.09 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1···O5i0.860 (18)2.045 (18)2.8858 (17)165.6 (15)
O2—H2···O3ii0.91 (2)1.99 (2)2.8463 (13)155.9 (18)
O2—H2···O2ii0.91 (2)2.57 (2)3.0274 (18)111.9 (14)
O5—H5B···O3iii0.96 (3)1.97 (3)2.8969 (17)161 (3)
N12—H12···O1iv0.877 (16)2.044 (16)2.8329 (14)149.2 (14)
C17—H17···Cg30.933.153.8226 (17)131
C16—H16···Cg5v0.932.753.5140 (19)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O5i0.860 (18)2.045 (18)2.8858 (17)165.6 (15)
O2—H2⋯O3ii0.91 (2)1.99 (2)2.8463 (13)155.9 (18)
O2—H2⋯O2ii0.91 (2)2.57 (2)3.0274 (18)111.9 (14)
O5—H5B⋯O3iii0.96 (3)1.97 (3)2.8969 (17)161 (3)
N12—H12⋯O1iv0.877 (16)2.044 (16)2.8329 (14)149.2 (14)
C17—H17⋯Cg30.933.153.8226 (17)130
C16—H16⋯Cg5v0.932.753.5140 (19)140

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg3 is the centroid of the C2–C7 ring and Cg5 is the centroid of the C20–C25 ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Aryl tryptamines: selective high-affinity antagonists for the h5-HT2A receptor.

Authors:  G I Stevenson; A L Smith; S Lewis; S G Michie; J G Neduvelil; S Patel; R Marwood; S Patel; J L Castro
Journal:  Bioorg Med Chem Lett       Date:  2000-12-18       Impact factor: 2.823

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

1.  2,2-Bis(1H-indol-3-yl)indolin-3-one.

Authors:  Zhao-Hao Li; Jing Xu; Wen-Liang Wu; Wei-Ping Su
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

2.  12-(4-Meth-oxy-benzo-yl)-2-methyl-benzo[f]pyrido[1,2-a]indole-6,11-dione.

Authors:  J Josephine Novina; G Vasuki; Yun Liu; Jin-Wei Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-29
  2 in total

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