Literature DB >> 21583204

2,2-Bis(1H-indol-3-yl)indolin-3-one.

Zhao-Hao Li, Jing Xu, Wen-Liang Wu, Wei-Ping Su.   

Abstract

In the title mol-ecule, C(24)H(17)N(3)O, the mean plane of the indolone ring forms dihedral angles of 112.0 (1) and 103.1 (1)° with the planes of the two indole rings. The dihedral angle between the mean planes of the two indole rings is 63.5 (1)°. In the crystal structure, mol-ecules are linked via inter-molecular N-H⋯O hydrogen bonds, forming a two-dimensional network parallel to the ab plane.

Entities:  

Year:  2009        PMID: 21583204      PMCID: PMC2969773          DOI: 10.1107/S1600536809017553

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of indole derivatives, see: Ramesh et al. (2009 ▶). For the isolation of the title compound as a natural product, see: Ganachaud et al. (2008 ▶); Stull et al. (1995 ▶).

Experimental

Crystal data

C24H17N3O M = 363.41 Monoclinic, a = 10.559 (4) Å b = 8.931 (3) Å c = 19.899 (7) Å β = 98.480 (6)° V = 1856.1 (11) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.40 × 0.35 × 0.15 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.968, T max = 0.988 14004 measured reflections 4245 independent reflections 3606 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.118 S = 1.06 4245 reflections 253 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017553/lh2811sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017553/lh2811Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H17N3OF(000) = 760
Mr = 363.41Dx = 1.300 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4234 reflections
a = 10.559 (4) Åθ = 3.0–27.5°
b = 8.931 (3) ŵ = 0.08 mm1
c = 19.899 (7) ÅT = 293 K
β = 98.480 (6)°Prism, yellow
V = 1856.1 (11) Å30.40 × 0.35 × 0.15 mm
Z = 4
Rigaku Mercury CCD diffractometer4245 independent reflections
Radiation source: fine-focus sealed tube3606 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 14.6306 pixels mm-1θmax = 27.5°, θmin = 2.1°
CCD_Profile_fitting scansh = −11→13
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −11→11
Tmin = 0.968, Tmax = 0.988l = −22→25
14004 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0513P)2 + 0.4603P] where P = (Fo2 + 2Fc2)/3
4245 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.96565 (9)0.43252 (10)0.15911 (5)0.0369 (2)
N10.95403 (12)0.04726 (13)0.11858 (6)0.0406 (3)
H1A0.9668−0.04740.12390.049*
N20.75509 (12)0.05077 (15)0.28328 (7)0.0490 (3)
H2B0.6914−0.00170.29230.059*
N31.31856 (12)0.10180 (15)0.26178 (6)0.0471 (3)
H3B1.37240.06590.29450.056*
C10.89773 (13)0.11138 (16)0.05986 (7)0.0374 (3)
C20.85094 (14)0.0420 (2)−0.00189 (8)0.0483 (4)
H2A0.8532−0.0615−0.00650.058*
C30.80181 (17)0.1314 (2)−0.05518 (8)0.0635 (5)
H3A0.77060.0868−0.09660.076*
C40.7967 (2)0.2867 (3)−0.04991 (9)0.0746 (6)
H4A0.76300.3437−0.08740.090*
C50.84151 (19)0.3558 (2)0.01064 (8)0.0604 (5)
H5A0.83830.45950.01470.072*
C60.89185 (13)0.26719 (17)0.06585 (7)0.0392 (3)
C70.94976 (12)0.30732 (14)0.13383 (6)0.0315 (3)
C80.99057 (13)0.15946 (14)0.17220 (6)0.0321 (3)
C90.81798 (14)0.15783 (17)0.32497 (7)0.0417 (3)
C100.79721 (18)0.2065 (2)0.38885 (8)0.0557 (4)
H10A0.73240.16550.41000.067*
C110.8753 (2)0.3166 (2)0.41938 (8)0.0616 (5)
H11A0.86350.35090.46210.074*
C120.97253 (17)0.3786 (2)0.38756 (8)0.0550 (4)
H12A1.02360.45410.40930.066*
C130.99417 (15)0.32982 (17)0.32449 (7)0.0424 (3)
H13A1.05970.37120.30400.051*
C140.91605 (13)0.21709 (15)0.29179 (7)0.0351 (3)
C150.90865 (13)0.13904 (15)0.22798 (7)0.0342 (3)
C160.80919 (14)0.04053 (17)0.22537 (8)0.0432 (3)
H16A0.7823−0.02400.18940.052*
C171.34968 (13)0.18478 (15)0.20847 (7)0.0380 (3)
C181.46884 (15)0.23042 (18)0.19416 (9)0.0491 (4)
H18A1.54360.20650.22300.059*
C191.47219 (15)0.31203 (18)0.13592 (9)0.0511 (4)
H19A1.55070.34360.12510.061*
C201.36003 (15)0.34840 (18)0.09265 (8)0.0461 (4)
H20A1.36510.40300.05330.055*
C211.24194 (14)0.30469 (15)0.10722 (7)0.0380 (3)
H21A1.16790.33040.07820.046*
C221.23417 (12)0.22113 (14)0.16619 (6)0.0322 (3)
C231.13200 (12)0.15690 (14)0.19763 (6)0.0326 (3)
C241.18882 (14)0.08515 (16)0.25473 (7)0.0412 (3)
H24A1.14540.03250.28460.049*
U11U22U33U12U13U23
O10.0351 (5)0.0344 (5)0.0407 (5)0.0007 (4)0.0040 (4)−0.0052 (4)
N10.0497 (7)0.0320 (6)0.0391 (6)−0.0014 (5)0.0029 (5)−0.0058 (5)
N20.0361 (7)0.0527 (8)0.0603 (8)−0.0086 (6)0.0138 (6)0.0105 (6)
N30.0361 (7)0.0560 (8)0.0472 (7)0.0108 (6)−0.0002 (5)0.0156 (6)
C10.0288 (7)0.0464 (8)0.0367 (7)−0.0010 (6)0.0041 (5)−0.0075 (6)
C20.0377 (8)0.0583 (9)0.0474 (8)−0.0003 (7)0.0016 (6)−0.0203 (7)
C30.0549 (11)0.0890 (14)0.0415 (9)0.0140 (10)−0.0100 (8)−0.0235 (9)
C40.0916 (16)0.0844 (14)0.0395 (9)0.0287 (12)−0.0181 (9)−0.0053 (9)
C50.0750 (12)0.0580 (10)0.0423 (8)0.0195 (9)−0.0110 (8)−0.0010 (7)
C60.0353 (7)0.0455 (8)0.0347 (7)0.0055 (6)−0.0015 (6)−0.0053 (6)
C70.0252 (6)0.0364 (7)0.0330 (6)0.0018 (5)0.0048 (5)−0.0025 (5)
C80.0327 (7)0.0322 (6)0.0311 (6)−0.0015 (5)0.0034 (5)−0.0032 (5)
C90.0367 (8)0.0463 (8)0.0437 (8)0.0066 (6)0.0114 (6)0.0125 (6)
C100.0577 (10)0.0660 (11)0.0486 (9)0.0120 (9)0.0249 (8)0.0170 (8)
C110.0735 (13)0.0775 (13)0.0365 (8)0.0178 (10)0.0174 (8)0.0021 (8)
C120.0601 (11)0.0623 (10)0.0419 (8)0.0047 (8)0.0051 (7)−0.0090 (7)
C130.0425 (8)0.0485 (8)0.0366 (7)−0.0009 (6)0.0067 (6)−0.0014 (6)
C140.0327 (7)0.0391 (7)0.0338 (6)0.0038 (5)0.0058 (5)0.0054 (5)
C150.0309 (7)0.0353 (7)0.0359 (7)−0.0004 (5)0.0039 (5)0.0026 (5)
C160.0367 (8)0.0436 (8)0.0486 (8)−0.0051 (6)0.0044 (6)0.0023 (6)
C170.0338 (7)0.0366 (7)0.0430 (7)0.0063 (5)0.0037 (6)0.0013 (6)
C180.0297 (7)0.0524 (9)0.0640 (10)0.0058 (6)0.0030 (7)0.0001 (8)
C190.0359 (8)0.0515 (9)0.0686 (11)−0.0027 (7)0.0172 (7)−0.0014 (8)
C200.0472 (9)0.0473 (8)0.0463 (8)−0.0034 (7)0.0154 (7)0.0031 (7)
C210.0371 (7)0.0407 (7)0.0359 (7)0.0006 (6)0.0049 (6)0.0006 (6)
C220.0313 (7)0.0308 (6)0.0346 (6)0.0036 (5)0.0051 (5)−0.0022 (5)
C230.0319 (7)0.0327 (6)0.0334 (6)0.0029 (5)0.0056 (5)0.0001 (5)
C240.0376 (8)0.0436 (8)0.0428 (8)0.0054 (6)0.0070 (6)0.0096 (6)
O1—C71.2274 (16)C9—C141.411 (2)
N1—C11.3571 (18)C10—C111.367 (3)
N1—C81.4731 (16)C10—H10A0.9300
N1—H1A0.8600C11—C121.398 (3)
N2—C161.363 (2)C11—H11A0.9300
N2—C91.371 (2)C12—C131.379 (2)
N2—H2B0.8600C12—H12A0.9300
N3—C241.3645 (19)C13—C141.400 (2)
N3—C171.3731 (19)C13—H13A0.9300
N3—H3B0.8600C14—C151.4405 (19)
C1—C61.399 (2)C15—C161.3652 (19)
C1—C21.3997 (19)C16—H16A0.9300
C2—C31.367 (3)C17—C181.391 (2)
C2—H2A0.9300C17—C221.4136 (19)
C3—C41.392 (3)C18—C191.374 (2)
C3—H3A0.9300C18—H18A0.9300
C4—C51.374 (2)C19—C201.396 (2)
C4—H4A0.9300C19—H19A0.9300
C5—C61.394 (2)C20—C211.378 (2)
C5—H5A0.9300C20—H20A0.9300
C6—C71.4451 (18)C21—C221.4031 (19)
C7—C81.5542 (18)C21—H21A0.9300
C8—C231.5046 (19)C22—C231.4434 (18)
C8—C151.5155 (19)C23—C241.3640 (19)
C9—C101.391 (2)C24—H24A0.9300
C1—N1—C8111.79 (11)C10—C11—C12121.26 (16)
C1—N1—H1A124.1C10—C11—H11A119.4
C8—N1—H1A124.1C12—C11—H11A119.4
C16—N2—C9109.42 (12)C13—C12—C11121.24 (17)
C16—N2—H2B125.3C13—C12—H12A119.4
C9—N2—H2B125.3C11—C12—H12A119.4
C24—N3—C17109.29 (12)C12—C13—C14119.00 (15)
C24—N3—H3B125.4C12—C13—H13A120.5
C17—N3—H3B125.4C14—C13—H13A120.5
N1—C1—C6111.45 (12)C13—C14—C9118.37 (13)
N1—C1—C2128.48 (14)C13—C14—C15135.19 (13)
C6—C1—C2120.06 (14)C9—C14—C15106.43 (13)
C3—C2—C1117.83 (16)C16—C15—C14106.67 (12)
C3—C2—H2A121.1C16—C15—C8124.66 (13)
C1—C2—H2A121.1C14—C15—C8128.66 (12)
C2—C3—C4122.53 (15)N2—C16—C15109.91 (14)
C2—C3—H3A118.7N2—C16—H16A125.0
C4—C3—H3A118.7C15—C16—H16A125.0
C5—C4—C3120.11 (17)N3—C17—C18130.01 (13)
C5—C4—H4A119.9N3—C17—C22107.46 (12)
C3—C4—H4A119.9C18—C17—C22122.53 (14)
C4—C5—C6118.52 (17)C19—C18—C17117.69 (14)
C4—C5—H5A120.7C19—C18—H18A121.2
C6—C5—H5A120.7C17—C18—H18A121.2
C5—C6—C1120.95 (14)C18—C19—C20121.24 (14)
C5—C6—C7131.01 (14)C18—C19—H19A119.4
C1—C6—C7107.97 (12)C20—C19—H19A119.4
O1—C7—C6128.53 (13)C21—C20—C19121.07 (14)
O1—C7—C8124.16 (12)C21—C20—H20A119.5
C6—C7—C8107.31 (11)C19—C20—H20A119.5
N1—C8—C23111.98 (11)C20—C21—C22119.54 (13)
N1—C8—C15109.37 (11)C20—C21—H21A120.2
C23—C8—C15113.41 (11)C22—C21—H21A120.2
N1—C8—C7101.43 (10)C21—C22—C17117.92 (12)
C23—C8—C7111.57 (10)C21—C22—C23135.52 (12)
C15—C8—C7108.37 (11)C17—C22—C23106.56 (12)
N2—C9—C10130.02 (15)C24—C23—C22106.43 (12)
N2—C9—C14107.57 (13)C24—C23—C8125.45 (12)
C10—C9—C14122.41 (15)C22—C23—C8128.05 (11)
C11—C10—C9117.71 (15)C23—C24—N3110.25 (13)
C11—C10—H10A121.1C23—C24—H24A124.9
C9—C10—H10A121.1N3—C24—H24A124.9
D—H···AD—HH···AD···AD—H···A
N2—H2B···O1i0.862.122.9412 (17)159
N3—H3B···O1ii0.862.182.9830 (16)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O1i0.862.122.9412 (17)159
N3—H3B⋯O1ii0.862.182.9830 (16)156

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3'-Benz-yloxy-3-hydr-oxy-3,3'-bi-1H-indole-2,2'(3H,3'H)-dione monohydrate.

Authors:  P Ramesh; S S Sundaresan; N Vidhya Lakshmi; Paramasivan T Perumal; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-08

3.  Production and oxidation of indole by Haemophilus influenzae.

Authors:  T L Stull; L Hyun; C Sharetzsky; J Wooten; J P McCauley; A B Smith
Journal:  J Biol Chem       Date:  1995-01-06       Impact factor: 5.157

  3 in total

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