Literature DB >> 21583975

Acridinium 3,5-dicarboxy-benzoate monohydrate.

Zohreh Derikvand, Hossein Aghabozorg, Jafar Attar Gharamaleki.   

Abstract

The title compound, C(13)H(10)N(+)·C(9)H(5)O(6) (-)·H(2)O, exhibits a wide range of non-covalent inter-actions, such as O-H⋯O and N-H⋯O hydrogen bonds, π-π stacking [centroid-centroid distances = 3.562 (8) and 3.872 (8) Å] and ion pairing, connecting the various components into a supra-molecular structure.

Entities:  

Year:  2009        PMID: 21583975      PMCID: PMC2977838          DOI: 10.1107/S1600536809015529

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to proton transfer compounds, see: Aghabozorg et al. (2008 ▶); (Tabatabaee et al. 2009 ▶). For related structures, see: Zadykowicz, Trzybiński et al. (2009 ▶); Zadykowicz, Krzymiński et al. (2009 ▶); Trzybiński et al. (2009 ▶).

Experimental

Crystal data

C13H10NC9H5O6 −·H2O M = 407.37 Triclinic, a = 6.8554 (4) Å b = 9.6930 (6) Å c = 14.8916 (10) Å α = 103.6870 (10)° β = 101.4240 (10)° γ = 103.3100 (10)° V = 901.62 (10) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 120 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.971, T max = 0.980 9138 measured reflections 4275 independent reflections 3659 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.130 S = 1.01 4275 reflections 271 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015529/pv2154sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015529/pv2154Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10N+·C9H5O6·H2OZ = 2
Mr = 407.37F(000) = 424
Triclinic, P1Dx = 1.501 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.8554 (4) ÅCell parameters from 5147 reflections
b = 9.6930 (6) Åθ = 2.3–30.0°
c = 14.8916 (10) ŵ = 0.11 mm1
α = 103.687 (1)°T = 120 K
β = 101.424 (1)°Prism, brown
γ = 103.310 (1)°0.25 × 0.20 × 0.15 mm
V = 901.62 (10) Å3
Bruker SMART 1000 CCD area-detector diffractometer4275 independent reflections
Radiation source: fine-focus sealed tube3659 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 28.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −9→9
Tmin = 0.971, Tmax = 0.980k = −12→12
9138 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: mixed
wR(F2) = 0.130H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.08P)2 + 0.36P] where P = (Fo2 + 2Fc2)/3
4275 reflections(Δ/σ)max < 0.001
271 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.53402 (13)0.57945 (10)0.27673 (6)0.0210 (2)
O20.84684 (14)0.54218 (10)0.30488 (6)0.0236 (2)
O30.76596 (15)0.03275 (10)−0.06853 (6)0.0239 (2)
H3O0.8501−0.0268−0.07660.029*
O40.96967 (16)0.12545 (11)0.08194 (7)0.0283 (2)
O50.07764 (15)0.36662 (11)−0.05679 (7)0.0247 (2)
H5O−0.02070.3674−0.10610.030*
O60.16639 (16)0.20983 (12)−0.16763 (7)0.0287 (2)
O70.16191 (15)0.62966 (12)0.21813 (7)0.0295 (2)
H7B0.27510.60540.23750.044*
H7C0.07650.59580.24990.044*
N10.68310 (16)0.81261 (11)0.43083 (7)0.0179 (2)
H1N0.64310.73520.37940.022*
C10.8239 (2)0.88639 (15)0.69373 (9)0.0240 (3)
H1A0.86690.96680.75100.029*
C20.7957 (2)0.74436 (16)0.69839 (9)0.0253 (3)
H2A0.81340.72620.75900.030*
C30.7401 (2)0.62373 (15)0.61357 (10)0.0241 (3)
H3A0.72530.52610.61840.029*
C40.70732 (19)0.64520 (14)0.52498 (9)0.0211 (3)
H4A0.67290.56370.46880.025*
C4A0.72531 (18)0.79041 (13)0.51809 (9)0.0181 (2)
C50.6491 (2)0.96360 (15)0.32571 (9)0.0225 (3)
H5A0.60040.87840.27110.027*
C60.6712 (2)1.10214 (16)0.31508 (10)0.0264 (3)
H6A0.63691.11250.25250.032*
C70.7447 (2)1.23140 (15)0.39604 (11)0.0266 (3)
H7A0.76071.32670.38690.032*
C80.7923 (2)1.21908 (14)0.48666 (10)0.0246 (3)
H8A0.84081.30580.54020.029*
C8A0.76947 (18)1.07638 (13)0.50154 (9)0.0197 (3)
C90.81271 (19)1.05643 (14)0.59263 (9)0.0214 (3)
H9A0.85871.14020.64810.026*
C9A0.78877 (18)0.91388 (14)0.60267 (9)0.0197 (3)
C10A0.69968 (19)0.94890 (14)0.41914 (9)0.0188 (2)
C100.60515 (18)0.40594 (13)0.15426 (8)0.0175 (2)
C110.73036 (19)0.31547 (13)0.13153 (9)0.0186 (2)
H11A0.85050.32200.17870.022*
C120.68132 (19)0.21555 (13)0.04031 (9)0.0180 (2)
C130.50674 (19)0.20648 (13)−0.02982 (9)0.0185 (2)
H13A0.47460.1400−0.09250.022*
C140.37953 (18)0.29568 (13)−0.00735 (8)0.0179 (2)
C150.42717 (18)0.39407 (13)0.08446 (9)0.0180 (2)
H15A0.33850.45320.09960.022*
C160.66843 (19)0.51724 (13)0.25273 (8)0.0182 (2)
C170.8191 (2)0.12108 (14)0.01994 (9)0.0197 (2)
C180.19722 (19)0.28509 (14)−0.08559 (9)0.0197 (2)
U11U22U33U12U13U23
O10.0199 (4)0.0232 (4)0.0190 (4)0.0101 (3)0.0046 (3)0.0011 (3)
O20.0210 (4)0.0291 (5)0.0181 (4)0.0119 (4)0.0008 (3)0.0015 (4)
O30.0269 (5)0.0273 (5)0.0181 (4)0.0167 (4)0.0040 (4)0.0010 (4)
O40.0307 (5)0.0337 (5)0.0201 (5)0.0215 (4)0.0013 (4)0.0003 (4)
O50.0235 (5)0.0319 (5)0.0203 (4)0.0166 (4)0.0029 (4)0.0047 (4)
O60.0282 (5)0.0354 (5)0.0193 (5)0.0166 (4)0.0011 (4)−0.0005 (4)
O70.0228 (5)0.0415 (6)0.0279 (5)0.0168 (4)0.0044 (4)0.0119 (4)
N10.0181 (5)0.0184 (5)0.0162 (5)0.0060 (4)0.0052 (4)0.0019 (4)
C10.0213 (6)0.0289 (6)0.0169 (6)0.0050 (5)0.0031 (5)0.0019 (5)
C20.0211 (6)0.0337 (7)0.0192 (6)0.0067 (5)0.0030 (5)0.0080 (5)
C30.0214 (6)0.0248 (6)0.0252 (6)0.0060 (5)0.0040 (5)0.0083 (5)
C40.0197 (6)0.0205 (6)0.0204 (6)0.0048 (4)0.0042 (5)0.0029 (5)
C4A0.0138 (5)0.0211 (6)0.0180 (6)0.0046 (4)0.0047 (4)0.0034 (4)
C50.0237 (6)0.0256 (6)0.0202 (6)0.0102 (5)0.0080 (5)0.0059 (5)
C60.0262 (7)0.0314 (7)0.0287 (7)0.0137 (5)0.0109 (5)0.0142 (6)
C70.0233 (6)0.0223 (6)0.0388 (8)0.0098 (5)0.0121 (6)0.0114 (6)
C80.0209 (6)0.0197 (6)0.0324 (7)0.0076 (5)0.0079 (5)0.0041 (5)
C8A0.0147 (5)0.0193 (6)0.0242 (6)0.0061 (4)0.0065 (4)0.0028 (5)
C90.0187 (6)0.0203 (6)0.0205 (6)0.0047 (4)0.0047 (5)−0.0012 (5)
C9A0.0162 (6)0.0217 (6)0.0186 (6)0.0042 (4)0.0049 (4)0.0022 (5)
C10A0.0166 (5)0.0207 (6)0.0200 (6)0.0070 (4)0.0068 (4)0.0048 (5)
C100.0188 (6)0.0189 (5)0.0160 (5)0.0079 (4)0.0049 (4)0.0045 (4)
C110.0191 (6)0.0195 (6)0.0175 (5)0.0086 (4)0.0037 (4)0.0042 (4)
C120.0197 (6)0.0185 (5)0.0182 (6)0.0096 (4)0.0065 (4)0.0050 (4)
C130.0205 (6)0.0195 (5)0.0162 (5)0.0085 (4)0.0051 (4)0.0036 (4)
C140.0187 (5)0.0196 (6)0.0165 (5)0.0082 (4)0.0047 (4)0.0049 (4)
C150.0180 (6)0.0189 (5)0.0177 (5)0.0076 (4)0.0054 (4)0.0040 (4)
C160.0201 (6)0.0198 (5)0.0170 (5)0.0086 (4)0.0055 (4)0.0062 (4)
C170.0222 (6)0.0202 (6)0.0181 (6)0.0103 (5)0.0054 (5)0.0040 (4)
C180.0191 (6)0.0207 (6)0.0199 (6)0.0085 (4)0.0045 (4)0.0053 (4)
O1—C161.2747 (15)C5—C10A1.4148 (17)
O2—C161.2474 (15)C5—H5A0.9500
O3—C171.3167 (15)C6—C71.425 (2)
O3—H3O0.9102C6—H6A0.9500
O4—C171.2261 (16)C7—C81.364 (2)
O5—C181.3258 (15)C7—H7A0.9500
O5—H5O0.8953C8—C8A1.4303 (18)
O6—C181.2143 (16)C8—H8A0.9500
O7—H7B0.8764C8A—C91.3988 (18)
O7—H7C0.8773C8A—C10A1.4280 (17)
N1—C4A1.3529 (16)C9—C9A1.4006 (18)
N1—C10A1.3550 (16)C9—H9A0.9500
N1—H1N0.8800C10—C111.3934 (16)
C1—C21.366 (2)C10—C151.3995 (17)
C1—C9A1.4280 (18)C10—C161.5120 (16)
C1—H1A0.9500C11—C121.3938 (16)
C2—C31.4188 (19)C11—H11A0.9500
C2—H2A0.9500C12—C131.3942 (17)
C3—C41.3668 (18)C12—C171.4844 (16)
C3—H3A0.9500C13—C141.3950 (16)
C4—C4A1.4144 (17)C13—H13A0.9500
C4—H4A0.9500C14—C151.3957 (17)
C4A—C9A1.4275 (17)C14—C181.4958 (17)
C5—C61.3667 (19)C15—H15A0.9500
C17—O3—H3O111.8C8A—C9—C9A120.49 (11)
C18—O5—H5O111.9C8A—C9—H9A119.8
H7B—O7—H7C105.4C9A—C9—H9A119.8
C4A—N1—C10A122.85 (11)C9—C9A—C4A118.55 (11)
C4A—N1—H1N118.6C9—C9A—C1122.95 (12)
C10A—N1—H1N118.6C4A—C9A—C1118.50 (12)
C2—C1—C9A119.94 (12)N1—C10A—C5119.81 (11)
C2—C1—H1A120.0N1—C10A—C8A119.46 (11)
C9A—C1—H1A120.0C5—C10A—C8A120.73 (12)
C1—C2—C3120.64 (12)C11—C10—C15119.08 (11)
C1—C2—H2A119.7C11—C10—C16119.12 (10)
C3—C2—H2A119.7C15—C10—C16121.77 (11)
C4—C3—C2121.31 (12)C10—C11—C12120.76 (11)
C4—C3—H3A119.3C10—C11—H11A119.6
C2—C3—H3A119.3C12—C11—H11A119.6
C3—C4—C4A119.08 (12)C13—C12—C11120.05 (11)
C3—C4—H4A120.5C13—C12—C17121.31 (11)
C4A—C4—H4A120.5C11—C12—C17118.63 (11)
N1—C4A—C4119.84 (11)C12—C13—C14119.52 (11)
N1—C4A—C9A119.77 (11)C12—C13—H13A120.2
C4—C4A—C9A120.39 (11)C14—C13—H13A120.2
C6—C5—C10A119.08 (12)C13—C14—C15120.32 (11)
C6—C5—H5A120.5C13—C14—C18117.62 (11)
C10A—C5—H5A120.5C15—C14—C18122.02 (11)
C5—C6—C7121.30 (13)C14—C15—C10120.23 (11)
C5—C6—H6A119.3C14—C15—H15A119.9
C7—C6—H6A119.3C10—C15—H15A119.9
C8—C7—C6120.37 (12)O2—C16—O1124.40 (11)
C8—C7—H7A119.8O2—C16—C10118.44 (11)
C6—C7—H7A119.8O1—C16—C10117.17 (10)
C7—C8—C8A120.42 (12)O4—C17—O3123.27 (11)
C7—C8—H8A119.8O4—C17—C12121.71 (11)
C8A—C8—H8A119.8O3—C17—C12115.01 (10)
C9—C8A—C10A118.83 (11)O6—C18—O5124.18 (11)
C9—C8A—C8123.08 (12)O6—C18—C14122.11 (11)
C10A—C8A—C8118.09 (12)O5—C18—C14113.70 (11)
C9A—C1—C2—C32.7 (2)C8—C8A—C10A—N1177.85 (10)
C1—C2—C3—C4−1.9 (2)C9—C8A—C10A—C5178.37 (11)
C2—C3—C4—C4A−1.30 (19)C8—C8A—C10A—C5−1.77 (18)
C10A—N1—C4A—C4−179.17 (11)C15—C10—C11—C120.76 (18)
C10A—N1—C4A—C9A0.52 (18)C16—C10—C11—C12−177.54 (11)
C3—C4—C4A—N1−176.65 (11)C10—C11—C12—C130.80 (19)
C3—C4—C4A—C9A3.66 (18)C10—C11—C12—C17−179.65 (11)
C10A—C5—C6—C70.2 (2)C11—C12—C13—C14−1.38 (18)
C5—C6—C7—C8−0.9 (2)C17—C12—C13—C14179.08 (11)
C6—C7—C8—C8A0.2 (2)C12—C13—C14—C150.41 (18)
C7—C8—C8A—C9−179.04 (12)C12—C13—C14—C18178.41 (11)
C7—C8—C8A—C10A1.11 (18)C13—C14—C15—C101.15 (18)
C10A—C8A—C9—C9A0.28 (18)C18—C14—C15—C10−176.75 (11)
C8—C8A—C9—C9A−179.57 (11)C11—C10—C15—C14−1.73 (18)
C8A—C9—C9A—C4A1.79 (18)C16—C10—C15—C14176.53 (11)
C8A—C9—C9A—C1−177.87 (11)C11—C10—C16—O211.75 (17)
N1—C4A—C9A—C9−2.23 (17)C15—C10—C16—O2−166.50 (11)
C4—C4A—C9A—C9177.46 (11)C11—C10—C16—O1−168.22 (11)
N1—C4A—C9A—C1177.44 (11)C15—C10—C16—O113.52 (17)
C4—C4A—C9A—C1−2.87 (18)C13—C12—C17—O4−177.96 (12)
C2—C1—C9A—C9179.34 (12)C11—C12—C17—O42.49 (19)
C2—C1—C9A—C4A−0.32 (19)C13—C12—C17—O31.45 (17)
C4A—N1—C10A—C5−178.76 (11)C11—C12—C17—O3−178.10 (11)
C4A—N1—C10A—C8A1.62 (18)C13—C14—C18—O6−4.89 (18)
C6—C5—C10A—N1−178.51 (11)C15—C14—C18—O6173.07 (12)
C6—C5—C10A—C8A1.10 (19)C13—C14—C18—O5176.13 (11)
C9—C8A—C10A—N1−2.01 (17)C15—C14—C18—O5−5.91 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O10.881.762.6403 (14)174
O3—H3O···O4i0.911.732.6370 (15)174
O5—H5O···O7ii0.901.772.6412 (14)165
O7—H7B···O10.881.852.7197 (14)172
O7—H7C···O2iii0.881.942.7989 (15)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O10.881.762.6403 (14)174
O3—H3O⋯O4i0.911.732.6370 (15)174
O5—H5O⋯O7ii0.901.772.6412 (14)165
O7—H7B⋯O10.881.852.7197 (14)172
O7—H7C⋯O2iii0.881.942.7989 (15)167

Symmetry codes: (i) ; (ii) ; (iii) .

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