| Literature DB >> 21522984 |
Hossein Aghabozorg, Maryam Saemi, Zeynab Khazaei, Vahid Amani, Behrouz Notash.
Abstract
The crystal structure of the title compound, C(4)H(15)N(3) (2+)·C(7)H(3)NO(4) (2-), consists of diethyl-enetriaminium (2,2'-azanediyl-diethanaminium) cations and pyridine-2,5-dicarboxyl-ate anions, which are linked by N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds. C-H⋯π inter-actions are also observed. In the anion, the carboxyl-ate groups are oriented at dihedral angles of 11.04 (15) and 6.31 (14)° with respect to the pyridine ring.Entities:
Year: 2011 PMID: 21522984 PMCID: PMC3051686 DOI: 10.1107/S1600536810054413
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H15N32+·C7H3NO42− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3595 reflections |
| θ = 2.5–29.2° | |
| µ = 0.10 mm−1 | |
| β = 106.67 (3)° | Block, yellow |
| 0.3 × 0.3 × 0.15 mm | |
| Stoe IPDS II diffractometer | 3593 independent reflections |
| Radiation source: fine-focus sealed tube | 2523 reflections with |
| graphite | |
| Detector resolution: 0.15 mm pixels mm-1 | θmax = 29.2°, θmin = 2.5° |
| rotation method scans | |
| Absorption correction: integration ( | |
| 14267 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3593 reflections | (Δ/σ)max < 0.001 |
| 200 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.6009 (2) | 0.1955 (4) | 0.15541 (15) | 0.0729 (8) | |
| O2 | 0.60280 (19) | 0.3262 (3) | 0.04174 (12) | 0.0548 (6) | |
| O3 | 1.29302 (19) | 0.1713 (3) | 0.26621 (13) | 0.0551 (6) | |
| O4 | 1.28741 (19) | 0.3736 (3) | 0.17248 (12) | 0.0509 (5) | |
| N1 | 0.8735 (2) | 0.3611 (3) | 0.09555 (13) | 0.0391 (5) | |
| N2 | 0.4579 (2) | −0.0627 (3) | 0.21118 (15) | 0.0382 (5) | |
| N3 | 0.2987 (2) | −0.0099 (3) | 0.04917 (15) | 0.0460 (6) | |
| N4 | 0.3271 (3) | 0.3560 (4) | 0.01663 (16) | 0.0443 (6) | |
| C1 | 0.8097 (2) | 0.2669 (3) | 0.13871 (15) | 0.0327 (5) | |
| C2 | 0.8779 (3) | 0.1723 (4) | 0.20632 (17) | 0.0436 (6) | |
| H2 | 0.8315 | 0.1112 | 0.2361 | 0.052* | |
| C3 | 1.0150 (3) | 0.1698 (4) | 0.22901 (16) | 0.0422 (6) | |
| H3 | 1.0619 | 0.1033 | 0.2729 | 0.051* | |
| C4 | 1.0825 (2) | 0.2672 (3) | 0.18589 (15) | 0.0341 (5) | |
| C5 | 1.0069 (3) | 0.3606 (3) | 0.12018 (16) | 0.0381 (6) | |
| H5 | 1.0515 | 0.4273 | 0.0913 | 0.046* | |
| C6 | 0.6586 (2) | 0.2626 (3) | 0.10991 (16) | 0.0381 (6) | |
| C7 | 1.2334 (3) | 0.2704 (4) | 0.21038 (16) | 0.0401 (6) | |
| C8 | 0.3824 (3) | −0.2064 (4) | 0.16064 (19) | 0.0496 (7) | |
| H8A | 0.3570 | −0.2911 | 0.1951 | 0.059* | |
| H8B | 0.4386 | −0.2640 | 0.1326 | 0.059* | |
| C9 | 0.2599 (3) | −0.1373 (4) | 0.09994 (18) | 0.0475 (7) | |
| H9A | 0.2120 | −0.2316 | 0.0669 | 0.057* | |
| H9B | 0.2015 | −0.0841 | 0.1277 | 0.057* | |
| C10 | 0.1898 (3) | 0.0876 (4) | −0.00271 (17) | 0.0474 (7) | |
| H10A | 0.1346 | 0.1334 | 0.0290 | 0.057* | |
| H10B | 0.1353 | 0.0113 | −0.0437 | 0.057* | |
| C11 | 0.2408 (3) | 0.2359 (4) | −0.04313 (17) | 0.0525 (8) | |
| H11A | 0.2909 | 0.1892 | −0.0777 | 0.063* | |
| H11B | 0.1657 | 0.3001 | −0.0770 | 0.063* | |
| H2A | 0.539 (3) | −0.100 (4) | 0.249 (2) | 0.058 (9)* | |
| H2B | 0.486 (3) | 0.011 (4) | 0.1790 (18) | 0.044 (8)* | |
| H2C | 0.405 (4) | 0.010 (5) | 0.238 (2) | 0.069 (10)* | |
| H3A | 0.352 (4) | −0.064 (5) | 0.018 (2) | 0.083 (12)* | |
| H4A | 0.417 (4) | 0.320 (4) | 0.032 (2) | 0.059 (9)* | |
| H4B | 0.300 (4) | 0.365 (5) | 0.064 (2) | 0.068 (11)* | |
| H4C | 0.322 (4) | 0.463 (5) | −0.006 (2) | 0.078 (12)* |
| O1 | 0.0440 (12) | 0.103 (2) | 0.0698 (15) | −0.0193 (12) | 0.0137 (11) | 0.0258 (14) |
| O2 | 0.0361 (10) | 0.0691 (14) | 0.0538 (12) | 0.0065 (10) | 0.0041 (9) | 0.0145 (11) |
| O3 | 0.0376 (10) | 0.0646 (14) | 0.0590 (13) | 0.0127 (10) | 0.0074 (9) | 0.0041 (11) |
| O4 | 0.0381 (10) | 0.0631 (13) | 0.0544 (12) | −0.0137 (9) | 0.0176 (9) | −0.0085 (10) |
| N1 | 0.0391 (11) | 0.0379 (11) | 0.0397 (11) | −0.0011 (9) | 0.0103 (9) | 0.0061 (9) |
| N2 | 0.0306 (11) | 0.0380 (12) | 0.0428 (12) | −0.0004 (9) | 0.0055 (10) | 0.0057 (10) |
| N3 | 0.0443 (13) | 0.0444 (13) | 0.0448 (13) | 0.0052 (10) | 0.0055 (10) | 0.0025 (11) |
| N4 | 0.0377 (12) | 0.0476 (14) | 0.0454 (14) | 0.0005 (11) | 0.0084 (10) | 0.0097 (11) |
| C1 | 0.0326 (11) | 0.0284 (11) | 0.0369 (12) | 0.0018 (9) | 0.0096 (10) | 0.0012 (10) |
| C2 | 0.0364 (13) | 0.0458 (15) | 0.0480 (15) | −0.0022 (11) | 0.0108 (11) | 0.0151 (12) |
| C3 | 0.0366 (13) | 0.0429 (14) | 0.0450 (14) | 0.0023 (11) | 0.0083 (11) | 0.0119 (12) |
| C4 | 0.0336 (12) | 0.0303 (12) | 0.0387 (13) | −0.0013 (10) | 0.0108 (10) | −0.0055 (10) |
| C6 | 0.0323 (12) | 0.0391 (13) | 0.0414 (14) | −0.0006 (10) | 0.0084 (10) | 0.0004 (11) |
| C7 | 0.0333 (12) | 0.0418 (14) | 0.0446 (14) | −0.0002 (11) | 0.0105 (11) | −0.0114 (12) |
| C8 | 0.0522 (17) | 0.0348 (14) | 0.0556 (17) | −0.0015 (12) | 0.0056 (14) | 0.0031 (12) |
| C9 | 0.0450 (15) | 0.0411 (14) | 0.0493 (15) | −0.0075 (12) | 0.0021 (12) | −0.0018 (13) |
| C10 | 0.0462 (15) | 0.0427 (15) | 0.0451 (15) | 0.0017 (12) | 0.0000 (12) | −0.0072 (12) |
| C11 | 0.0604 (18) | 0.0531 (17) | 0.0379 (14) | 0.0071 (15) | 0.0040 (13) | 0.0039 (13) |
| C5 | 0.0414 (13) | 0.0343 (12) | 0.0403 (13) | −0.0041 (11) | 0.0146 (11) | 0.0039 (11) |
| O1—C6 | 1.233 (3) | C1—C6 | 1.519 (3) |
| O2—C6 | 1.253 (3) | C2—C3 | 1.378 (4) |
| O3—C7 | 1.248 (3) | C2—H2 | 0.9300 |
| O4—C7 | 1.262 (3) | C3—C4 | 1.385 (4) |
| N1—C5 | 1.340 (3) | C3—H3 | 0.9300 |
| N1—C1 | 1.347 (3) | C4—C5 | 1.384 (4) |
| N2—C8 | 1.489 (4) | C4—C7 | 1.516 (3) |
| N2—H2A | 0.96 (3) | C8—C9 | 1.503 (4) |
| N2—H2B | 0.90 (3) | C8—H8A | 0.9700 |
| N2—H2C | 1.00 (4) | C8—H8B | 0.9700 |
| N3—C10 | 1.444 (4) | C9—H9A | 0.9700 |
| N3—C9 | 1.450 (4) | C9—H9B | 0.9700 |
| N3—H3A | 0.98 (4) | C10—C11 | 1.514 (4) |
| N4—C11 | 1.484 (4) | C10—H10A | 0.9700 |
| N4—H4A | 0.94 (4) | C10—H10B | 0.9700 |
| N4—H4B | 0.95 (4) | C11—H11A | 0.9700 |
| N4—H4C | 0.91 (4) | C11—H11B | 0.9700 |
| C1—C2 | 1.387 (3) | C5—H5 | 0.9300 |
| C5—N1—C1 | 117.5 (2) | O3—C7—O4 | 125.9 (2) |
| C8—N2—H2A | 113.6 (19) | O3—C7—C4 | 117.2 (2) |
| C8—N2—H2B | 108.7 (19) | O4—C7—C4 | 117.0 (2) |
| H2A—N2—H2B | 103 (3) | N2—C8—C9 | 110.5 (2) |
| C8—N2—H2C | 115 (2) | N2—C8—H8A | 109.6 |
| H2A—N2—H2C | 111 (3) | C9—C8—H8A | 109.6 |
| H2B—N2—H2C | 105 (3) | N2—C8—H8B | 109.6 |
| C10—N3—C9 | 114.7 (2) | C9—C8—H8B | 109.6 |
| C10—N3—H3A | 111 (2) | H8A—C8—H8B | 108.1 |
| C9—N3—H3A | 111 (2) | N3—C9—C8 | 109.2 (2) |
| C11—N4—H4A | 112 (2) | N3—C9—H9A | 109.8 |
| C11—N4—H4B | 112 (2) | C8—C9—H9A | 109.8 |
| H4A—N4—H4B | 107 (3) | N3—C9—H9B | 109.8 |
| C11—N4—H4C | 108 (2) | C8—C9—H9B | 109.8 |
| H4A—N4—H4C | 109 (3) | H9A—C9—H9B | 108.3 |
| H4B—N4—H4C | 108 (3) | N3—C10—C11 | 110.9 (2) |
| N1—C1—C2 | 122.0 (2) | N3—C10—H10A | 109.5 |
| N1—C1—C6 | 117.9 (2) | C11—C10—H10A | 109.5 |
| C2—C1—C6 | 120.1 (2) | N3—C10—H10B | 109.5 |
| C3—C2—C1 | 119.4 (2) | C11—C10—H10B | 109.5 |
| C3—C2—H2 | 120.3 | H10A—C10—H10B | 108.0 |
| C1—C2—H2 | 120.3 | N4—C11—C10 | 112.1 (2) |
| C2—C3—C4 | 119.5 (2) | N4—C11—H11A | 109.2 |
| C2—C3—H3 | 120.3 | C10—C11—H11A | 109.2 |
| C4—C3—H3 | 120.3 | N4—C11—H11B | 109.2 |
| C5—C4—C3 | 117.4 (2) | C10—C11—H11B | 109.2 |
| C5—C4—C7 | 121.8 (2) | H11A—C11—H11B | 107.9 |
| C3—C4—C7 | 120.8 (2) | N1—C5—C4 | 124.2 (2) |
| O1—C6—O2 | 125.4 (2) | N1—C5—H5 | 117.9 |
| O1—C6—C1 | 117.2 (2) | C4—C5—H5 | 117.9 |
| O2—C6—C1 | 117.4 (2) | ||
| C5—N1—C1—C2 | 0.1 (4) | C5—C4—C7—O3 | −174.3 (2) |
| C5—N1—C1—C6 | −178.4 (2) | C3—C4—C7—O3 | 5.8 (4) |
| N1—C1—C2—C3 | −2.0 (4) | C5—C4—C7—O4 | 5.8 (4) |
| C6—C1—C2—C3 | 176.4 (3) | C3—C4—C7—O4 | −174.1 (2) |
| C1—C2—C3—C4 | 2.6 (4) | C10—N3—C9—C8 | −170.1 (2) |
| C2—C3—C4—C5 | −1.3 (4) | N2—C8—C9—N3 | 58.8 (3) |
| C2—C3—C4—C7 | 178.6 (3) | C9—N3—C10—C11 | 170.9 (2) |
| N1—C1—C6—O1 | −170.7 (3) | N3—C10—C11—N4 | −58.1 (3) |
| C2—C1—C6—O1 | 10.9 (4) | C1—N1—C5—C4 | 1.3 (4) |
| N1—C1—C6—O2 | 9.9 (4) | C3—C4—C5—N1 | −0.7 (4) |
| C2—C1—C6—O2 | −168.6 (3) | C7—C4—C5—N1 | 179.4 (2) |
| Cg is the centroid of the pyridine ring. |
| H··· | ||||
| N2—H2A···O3i | 0.96 (3) | 2.56 (3) | 3.254 (3) | 130 (2) |
| N2—H2A···O4i | 0.96 (3) | 1.94 (3) | 2.886 (3) | 169 (3) |
| N2—H2B···O1 | 0.90 (3) | 1.98 (3) | 2.821 (4) | 155 (3) |
| N2—H2C···O3ii | 0.99 (4) | 1.87 (4) | 2.843 (3) | 167 (3) |
| N3—H3A···O2iii | 0.97 (4) | 2.38 (4) | 3.223 (3) | 145 (3) |
| N4—H4A···O2 | 0.95 (4) | 1.91 (4) | 2.807 (4) | 158 (3) |
| N4—H4B···O4ii | 0.94 (4) | 1.92 (3) | 2.840 (3) | 167 (4) |
| N4—H4C···O2iv | 0.91 (4) | 1.98 (4) | 2.823 (4) | 154 (4) |
| N4—H4C···N1iv | 0.91 (4) | 2.57 (4) | 3.253 (4) | 133 (3) |
| C8—H8A···O1v | 0.97 | 2.49 | 3.218 (4) | 132 |
| C3—H3···Cgi | 0.93 | 2.83 | 3.588 (3) | 139 |
| C10—H10B···Cgiii | 0.97 | 2.91 | 3.846 (3) | 161 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the pyridine ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.96 (3) | 2.56 (3) | 3.254 (3) | 130 (2) |
| N2—H2 | 0.96 (3) | 1.94 (3) | 2.886 (3) | 169 (3) |
| N2—H2 | 0.90 (3) | 1.98 (3) | 2.821 (4) | 155 (3) |
| N2—H2 | 0.99 (4) | 1.87 (4) | 2.843 (3) | 167 (3) |
| N3—H3 | 0.97 (4) | 2.38 (4) | 3.223 (3) | 145 (3) |
| N4—H4 | 0.95 (4) | 1.91 (4) | 2.807 (4) | 158 (3) |
| N4—H4 | 0.94 (4) | 1.92 (3) | 2.840 (3) | 167 (4) |
| N4—H4 | 0.91 (4) | 1.98 (4) | 2.823 (4) | 154 (4) |
| N4—H4 | 0.91 (4) | 2.57 (4) | 3.253 (4) | 133 (3) |
| C8—H8 | 0.97 | 2.49 | 3.218 (4) | 132 |
| C3—H3⋯ | 0.93 | 2.83 | 3.588 (3) | 139 |
| C10—H10 | 0.97 | 2.91 | 3.846 (3) | 161 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .