Literature DB >> 21522984

2,2'-Azanediyl-diethanaminium pyridine-2,5-dicarboxyl-ate.

Hossein Aghabozorg, Maryam Saemi, Zeynab Khazaei, Vahid Amani, Behrouz Notash.   

Abstract

The crystal structure of the title compound, C(4)H(15)N(3) (2+)·C(7)H(3)NO(4) (2-), consists of diethyl-enetriaminium (2,2'-azanediyl-diethanaminium) cations and pyridine-2,5-dicarboxyl-ate anions, which are linked by N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds. C-H⋯π inter-actions are also observed. In the anion, the carboxyl-ate groups are oriented at dihedral angles of 11.04 (15) and 6.31 (14)° with respect to the pyridine ring.

Entities:  

Year:  2011        PMID: 21522984      PMCID: PMC3051686          DOI: 10.1107/S1600536810054413

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to proton-transfer compounds, see: Sheshmani et al. (2007 ▶); Aghabozorg et al. (2008a ▶,b ▶,c ▶); Derikvand et al. (2009 ▶).

Experimental

Crystal data

C4H15N3 2+·C7H3NO4 2− M = 270.29 Monoclinic, a = 10.485 (2) Å b = 7.7016 (15) Å c = 17.254 (4) Å β = 106.67 (3)° V = 1334.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.3 × 0.3 × 0.15 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2005 ▶) T min = 0.967, T max = 0.983 14267 measured reflections 3593 independent reflections 2523 reflections with I > 2σ(I) R int = 0.099

Refinement

R[F 2 > 2σ(F 2)] = 0.087 wR(F 2) = 0.184 S = 1.18 3593 reflections 200 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.28 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810054413/xu5129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810054413/xu5129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H15N32+·C7H3NO42F(000) = 576.0
Mr = 270.29Dx = 1.345 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3595 reflections
a = 10.485 (2) Åθ = 2.5–29.2°
b = 7.7016 (15) ŵ = 0.10 mm1
c = 17.254 (4) ÅT = 298 K
β = 106.67 (3)°Block, yellow
V = 1334.7 (5) Å30.3 × 0.3 × 0.15 mm
Z = 4
Stoe IPDS II diffractometer3593 independent reflections
Radiation source: fine-focus sealed tube2523 reflections with I > 2σ(I)
graphiteRint = 0.099
Detector resolution: 0.15 mm pixels mm-1θmax = 29.2°, θmin = 2.5°
rotation method scansh = −14→13
Absorption correction: integration (X-RED32; Stoe & Cie, 2005)k = −10→10
Tmin = 0.967, Tmax = 0.983l = −23→23
14267 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.087Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.184H atoms treated by a mixture of independent and constrained refinement
S = 1.18w = 1/[σ2(Fo2) + (0.0436P)2 + 0.9032P] where P = (Fo2 + 2Fc2)/3
3593 reflections(Δ/σ)max < 0.001
200 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6009 (2)0.1955 (4)0.15541 (15)0.0729 (8)
O20.60280 (19)0.3262 (3)0.04174 (12)0.0548 (6)
O31.29302 (19)0.1713 (3)0.26621 (13)0.0551 (6)
O41.28741 (19)0.3736 (3)0.17248 (12)0.0509 (5)
N10.8735 (2)0.3611 (3)0.09555 (13)0.0391 (5)
N20.4579 (2)−0.0627 (3)0.21118 (15)0.0382 (5)
N30.2987 (2)−0.0099 (3)0.04917 (15)0.0460 (6)
N40.3271 (3)0.3560 (4)0.01663 (16)0.0443 (6)
C10.8097 (2)0.2669 (3)0.13871 (15)0.0327 (5)
C20.8779 (3)0.1723 (4)0.20632 (17)0.0436 (6)
H20.83150.11120.23610.052*
C31.0150 (3)0.1698 (4)0.22901 (16)0.0422 (6)
H31.06190.10330.27290.051*
C41.0825 (2)0.2672 (3)0.18589 (15)0.0341 (5)
C51.0069 (3)0.3606 (3)0.12018 (16)0.0381 (6)
H51.05150.42730.09130.046*
C60.6586 (2)0.2626 (3)0.10991 (16)0.0381 (6)
C71.2334 (3)0.2704 (4)0.21038 (16)0.0401 (6)
C80.3824 (3)−0.2064 (4)0.16064 (19)0.0496 (7)
H8A0.3570−0.29110.19510.059*
H8B0.4386−0.26400.13260.059*
C90.2599 (3)−0.1373 (4)0.09994 (18)0.0475 (7)
H9A0.2120−0.23160.06690.057*
H9B0.2015−0.08410.12770.057*
C100.1898 (3)0.0876 (4)−0.00271 (17)0.0474 (7)
H10A0.13460.13340.02900.057*
H10B0.13530.0113−0.04370.057*
C110.2408 (3)0.2359 (4)−0.04313 (17)0.0525 (8)
H11A0.29090.1892−0.07770.063*
H11B0.16570.3001−0.07700.063*
H2A0.539 (3)−0.100 (4)0.249 (2)0.058 (9)*
H2B0.486 (3)0.011 (4)0.1790 (18)0.044 (8)*
H2C0.405 (4)0.010 (5)0.238 (2)0.069 (10)*
H3A0.352 (4)−0.064 (5)0.018 (2)0.083 (12)*
H4A0.417 (4)0.320 (4)0.032 (2)0.059 (9)*
H4B0.300 (4)0.365 (5)0.064 (2)0.068 (11)*
H4C0.322 (4)0.463 (5)−0.006 (2)0.078 (12)*
U11U22U33U12U13U23
O10.0440 (12)0.103 (2)0.0698 (15)−0.0193 (12)0.0137 (11)0.0258 (14)
O20.0361 (10)0.0691 (14)0.0538 (12)0.0065 (10)0.0041 (9)0.0145 (11)
O30.0376 (10)0.0646 (14)0.0590 (13)0.0127 (10)0.0074 (9)0.0041 (11)
O40.0381 (10)0.0631 (13)0.0544 (12)−0.0137 (9)0.0176 (9)−0.0085 (10)
N10.0391 (11)0.0379 (11)0.0397 (11)−0.0011 (9)0.0103 (9)0.0061 (9)
N20.0306 (11)0.0380 (12)0.0428 (12)−0.0004 (9)0.0055 (10)0.0057 (10)
N30.0443 (13)0.0444 (13)0.0448 (13)0.0052 (10)0.0055 (10)0.0025 (11)
N40.0377 (12)0.0476 (14)0.0454 (14)0.0005 (11)0.0084 (10)0.0097 (11)
C10.0326 (11)0.0284 (11)0.0369 (12)0.0018 (9)0.0096 (10)0.0012 (10)
C20.0364 (13)0.0458 (15)0.0480 (15)−0.0022 (11)0.0108 (11)0.0151 (12)
C30.0366 (13)0.0429 (14)0.0450 (14)0.0023 (11)0.0083 (11)0.0119 (12)
C40.0336 (12)0.0303 (12)0.0387 (13)−0.0013 (10)0.0108 (10)−0.0055 (10)
C60.0323 (12)0.0391 (13)0.0414 (14)−0.0006 (10)0.0084 (10)0.0004 (11)
C70.0333 (12)0.0418 (14)0.0446 (14)−0.0002 (11)0.0105 (11)−0.0114 (12)
C80.0522 (17)0.0348 (14)0.0556 (17)−0.0015 (12)0.0056 (14)0.0031 (12)
C90.0450 (15)0.0411 (14)0.0493 (15)−0.0075 (12)0.0021 (12)−0.0018 (13)
C100.0462 (15)0.0427 (15)0.0451 (15)0.0017 (12)0.0000 (12)−0.0072 (12)
C110.0604 (18)0.0531 (17)0.0379 (14)0.0071 (15)0.0040 (13)0.0039 (13)
C50.0414 (13)0.0343 (12)0.0403 (13)−0.0041 (11)0.0146 (11)0.0039 (11)
O1—C61.233 (3)C1—C61.519 (3)
O2—C61.253 (3)C2—C31.378 (4)
O3—C71.248 (3)C2—H20.9300
O4—C71.262 (3)C3—C41.385 (4)
N1—C51.340 (3)C3—H30.9300
N1—C11.347 (3)C4—C51.384 (4)
N2—C81.489 (4)C4—C71.516 (3)
N2—H2A0.96 (3)C8—C91.503 (4)
N2—H2B0.90 (3)C8—H8A0.9700
N2—H2C1.00 (4)C8—H8B0.9700
N3—C101.444 (4)C9—H9A0.9700
N3—C91.450 (4)C9—H9B0.9700
N3—H3A0.98 (4)C10—C111.514 (4)
N4—C111.484 (4)C10—H10A0.9700
N4—H4A0.94 (4)C10—H10B0.9700
N4—H4B0.95 (4)C11—H11A0.9700
N4—H4C0.91 (4)C11—H11B0.9700
C1—C21.387 (3)C5—H50.9300
C5—N1—C1117.5 (2)O3—C7—O4125.9 (2)
C8—N2—H2A113.6 (19)O3—C7—C4117.2 (2)
C8—N2—H2B108.7 (19)O4—C7—C4117.0 (2)
H2A—N2—H2B103 (3)N2—C8—C9110.5 (2)
C8—N2—H2C115 (2)N2—C8—H8A109.6
H2A—N2—H2C111 (3)C9—C8—H8A109.6
H2B—N2—H2C105 (3)N2—C8—H8B109.6
C10—N3—C9114.7 (2)C9—C8—H8B109.6
C10—N3—H3A111 (2)H8A—C8—H8B108.1
C9—N3—H3A111 (2)N3—C9—C8109.2 (2)
C11—N4—H4A112 (2)N3—C9—H9A109.8
C11—N4—H4B112 (2)C8—C9—H9A109.8
H4A—N4—H4B107 (3)N3—C9—H9B109.8
C11—N4—H4C108 (2)C8—C9—H9B109.8
H4A—N4—H4C109 (3)H9A—C9—H9B108.3
H4B—N4—H4C108 (3)N3—C10—C11110.9 (2)
N1—C1—C2122.0 (2)N3—C10—H10A109.5
N1—C1—C6117.9 (2)C11—C10—H10A109.5
C2—C1—C6120.1 (2)N3—C10—H10B109.5
C3—C2—C1119.4 (2)C11—C10—H10B109.5
C3—C2—H2120.3H10A—C10—H10B108.0
C1—C2—H2120.3N4—C11—C10112.1 (2)
C2—C3—C4119.5 (2)N4—C11—H11A109.2
C2—C3—H3120.3C10—C11—H11A109.2
C4—C3—H3120.3N4—C11—H11B109.2
C5—C4—C3117.4 (2)C10—C11—H11B109.2
C5—C4—C7121.8 (2)H11A—C11—H11B107.9
C3—C4—C7120.8 (2)N1—C5—C4124.2 (2)
O1—C6—O2125.4 (2)N1—C5—H5117.9
O1—C6—C1117.2 (2)C4—C5—H5117.9
O2—C6—C1117.4 (2)
C5—N1—C1—C20.1 (4)C5—C4—C7—O3−174.3 (2)
C5—N1—C1—C6−178.4 (2)C3—C4—C7—O35.8 (4)
N1—C1—C2—C3−2.0 (4)C5—C4—C7—O45.8 (4)
C6—C1—C2—C3176.4 (3)C3—C4—C7—O4−174.1 (2)
C1—C2—C3—C42.6 (4)C10—N3—C9—C8−170.1 (2)
C2—C3—C4—C5−1.3 (4)N2—C8—C9—N358.8 (3)
C2—C3—C4—C7178.6 (3)C9—N3—C10—C11170.9 (2)
N1—C1—C6—O1−170.7 (3)N3—C10—C11—N4−58.1 (3)
C2—C1—C6—O110.9 (4)C1—N1—C5—C41.3 (4)
N1—C1—C6—O29.9 (4)C3—C4—C5—N1−0.7 (4)
C2—C1—C6—O2−168.6 (3)C7—C4—C5—N1179.4 (2)
Cg is the centroid of the pyridine ring.
D—H···AD—HH···AD···AD—H···A
N2—H2A···O3i0.96 (3)2.56 (3)3.254 (3)130 (2)
N2—H2A···O4i0.96 (3)1.94 (3)2.886 (3)169 (3)
N2—H2B···O10.90 (3)1.98 (3)2.821 (4)155 (3)
N2—H2C···O3ii0.99 (4)1.87 (4)2.843 (3)167 (3)
N3—H3A···O2iii0.97 (4)2.38 (4)3.223 (3)145 (3)
N4—H4A···O20.95 (4)1.91 (4)2.807 (4)158 (3)
N4—H4B···O4ii0.94 (4)1.92 (3)2.840 (3)167 (4)
N4—H4C···O2iv0.91 (4)1.98 (4)2.823 (4)154 (4)
N4—H4C···N1iv0.91 (4)2.57 (4)3.253 (4)133 (3)
C8—H8A···O1v0.972.493.218 (4)132
C3—H3···Cgi0.932.833.588 (3)139
C10—H10B···Cgiii0.972.913.846 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the pyridine ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O3i0.96 (3)2.56 (3)3.254 (3)130 (2)
N2—H2A⋯O4i0.96 (3)1.94 (3)2.886 (3)169 (3)
N2—H2B⋯O10.90 (3)1.98 (3)2.821 (4)155 (3)
N2—H2C⋯O3ii0.99 (4)1.87 (4)2.843 (3)167 (3)
N3—H3A⋯O2iii0.97 (4)2.38 (4)3.223 (3)145 (3)
N4—H4A⋯O20.95 (4)1.91 (4)2.807 (4)158 (3)
N4—H4B⋯O4ii0.94 (4)1.92 (3)2.840 (3)167 (4)
N4—H4C⋯O2iv0.91 (4)1.98 (4)2.823 (4)154 (4)
N4—H4C⋯N1iv0.91 (4)2.57 (4)3.253 (4)133 (3)
C8—H8A⋯O1v0.972.493.218 (4)132
C3—H3⋯Cgi0.932.833.588 (3)139
C10—H10BCgiii0.972.913.846 (3)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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