Literature DB >> 21582222

9-(Methyl-sulfan-yl)acridinium trifluoro-methane-sulfonate.

Beata Zadykowicz1, Damian Trzybiński, Artur Sikorski, Jerzy Błażejowski.   

Abstract

In the crystal structure of the title compound, C(14)H(12)NS(+)·CF(3)SO(3) (-), N-H⋯O hydrogen bonds link cations and anions into ion pairs. Inversely oriented ion pairs form stacks through multidirectional π-π inter-actions among the acridine units. The crystal structure features a network of C-H⋯O inter-actions among stacks and also long-range electrostatic inter-actions among ions. In the packing of the mol-ecules, the acridine units are nearly parallel in stacks or inclined at an angle of 33.07 (2)° in the four adjacent stacks with which they inter-act via weak C-H⋯O inter-actions. The methyl-sulfanyl group is twisted through an angle of 60.53 (2)° with respect to the acridine ring.

Entities:  

Year:  2009        PMID: 21582222      PMCID: PMC2968655          DOI: 10.1107/S1600536809004978

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Wróblewska et al. (2004 ▶); Zomer & Jacquemijns (2001 ▶). For related structures, see: Meszko et al. (2002 ▶); Mrozek et al. (2002 ▶); Storoniak et al. (2000 ▶). For mol­ecular inter­actions, see: Aakeröy et al. (1992 ▶); Bianchi et al. (2004 ▶); Hunter et al. (2001 ▶); Spek (2009 ▶); Steiner (1991 ▶). For the synthesis, see: Berny et al. (1992 ▶); Sato (1996 ▶).

Experimental

Crystal data

C14H12NSCF3SO3 M = 375.40 Monoclinic, a = 7.2992 (2) Å b = 17.3090 (6) Å c = 13.0582 (4) Å β = 103.910 (3)° V = 1601.42 (9) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 295 K 0.45 × 0.40 × 0.20 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer Absorption correction: none 13308 measured reflections 2841 independent reflections 1944 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.161 S = 1.06 2841 reflections 226 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809004978/ng2540sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809004978/ng2540Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12NS+·CF3SO3F(000) = 768
Mr = 375.40Dx = 1.557 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5491 reflections
a = 7.2992 (2) Åθ = 3.1–29.2°
b = 17.3090 (6) ŵ = 0.38 mm1
c = 13.0582 (4) ÅT = 295 K
β = 103.910 (3)°Block, yellow
V = 1601.42 (9) Å30.45 × 0.4 × 0.2 mm
Z = 4
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer1944 reflections with I > 2σ(I)
Radiation source: Enhance (Mo) X-ray SourceRint = 0.028
graphiteθmax = 25.1°, θmin = 3.1°
Detector resolution: 10.4002 pixels mm-1h = −8→8
ω scansk = −20→20
13308 measured reflectionsl = −15→15
2841 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.1054P)2] where P = (Fo2 + 2Fc2)/3
2841 reflections(Δ/σ)max = 0.001
226 parametersΔρmax = 0.51 e Å3
1 restraintΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C1−0.0169 (4)1.03470 (19)0.2103 (2)0.0567 (7)
H1−0.07401.08240.19160.068*
C2−0.0343 (4)0.9785 (2)0.1374 (2)0.0702 (9)
H2−0.10390.98790.06900.084*
C30.0508 (5)0.9058 (2)0.1626 (3)0.0751 (10)
H30.04040.86840.11030.090*
C40.1478 (4)0.8897 (2)0.2624 (3)0.0630 (8)
H40.20230.84140.27910.076*
C50.3767 (3)0.9596 (2)0.6240 (2)0.0577 (8)
H50.41900.90920.63800.069*
C60.4067 (4)1.0138 (2)0.7023 (2)0.0657 (9)
H60.47170.99980.77000.079*
C70.3425 (4)1.0895 (2)0.6832 (3)0.0670 (9)
H70.380 (4)1.127 (2)0.742 (3)0.079 (10)*
C80.2485 (4)1.11202 (18)0.5862 (2)0.0573 (7)
H80.20701.16280.57500.069*
C90.1176 (3)1.07880 (15)0.3956 (2)0.0442 (6)
N100.2546 (3)0.93052 (14)0.44086 (19)0.0478 (6)
H100.300 (4)0.8858 (12)0.462 (2)0.071 (10)*
C110.0877 (3)1.02193 (16)0.3156 (2)0.0453 (6)
C120.1652 (3)0.94706 (16)0.3405 (2)0.0455 (6)
C130.2116 (3)1.05863 (16)0.49974 (19)0.0438 (6)
C140.2796 (3)0.98202 (16)0.5208 (2)0.0441 (6)
S150.03215 (12)1.17329 (5)0.36941 (8)0.0731 (3)
C160.1546 (5)1.2067 (2)0.2729 (3)0.0770 (10)
H16A0.10991.25720.24880.116*
H16B0.13141.17160.21420.116*
H16C0.28771.20890.30440.116*
S170.36383 (10)0.71528 (5)0.50824 (6)0.0577 (3)
O180.4183 (4)0.6911 (2)0.6130 (2)0.1215 (12)
O190.4246 (4)0.79237 (14)0.4965 (3)0.1040 (10)
O200.1780 (3)0.6955 (2)0.4545 (2)0.1045 (10)
C210.5109 (6)0.6611 (3)0.4413 (4)0.0960 (13)
F220.4700 (5)0.6751 (3)0.3414 (3)0.193 (2)
F230.4819 (6)0.5867 (2)0.4487 (4)0.2000 (19)
F240.6911 (3)0.67460 (17)0.4790 (3)0.1366 (11)
U11U22U33U12U13U23
C10.0519 (15)0.068 (2)0.0489 (15)0.0013 (14)0.0100 (12)0.0050 (15)
C20.0620 (18)0.096 (3)0.0504 (17)−0.0082 (18)0.0092 (14)−0.0036 (18)
C30.0695 (19)0.092 (3)0.067 (2)−0.0095 (19)0.0227 (17)−0.031 (2)
C40.0542 (16)0.059 (2)0.077 (2)0.0015 (14)0.0176 (15)−0.0158 (16)
C50.0438 (14)0.070 (2)0.0586 (18)−0.0061 (13)0.0101 (13)0.0162 (16)
C60.0537 (16)0.095 (3)0.0466 (17)−0.0186 (17)0.0077 (13)0.0052 (17)
C70.0646 (18)0.086 (3)0.0510 (18)−0.0206 (18)0.0156 (15)−0.0155 (18)
C80.0582 (16)0.0533 (19)0.0639 (19)−0.0093 (13)0.0218 (14)−0.0097 (14)
C90.0383 (12)0.0407 (16)0.0555 (16)0.0005 (11)0.0151 (11)0.0019 (12)
N100.0417 (11)0.0395 (14)0.0618 (15)0.0004 (10)0.0118 (10)0.0048 (12)
C110.0379 (12)0.0494 (17)0.0499 (15)0.0018 (11)0.0129 (11)0.0016 (12)
C120.0375 (12)0.0475 (17)0.0534 (16)−0.0055 (11)0.0144 (11)−0.0059 (13)
C130.0400 (12)0.0448 (16)0.0496 (15)−0.0082 (11)0.0166 (11)−0.0039 (12)
C140.0353 (12)0.0488 (17)0.0489 (15)−0.0069 (11)0.0113 (11)0.0023 (12)
S150.0800 (6)0.0507 (6)0.0909 (7)0.0178 (4)0.0248 (5)0.0059 (4)
C160.083 (2)0.056 (2)0.087 (2)−0.0126 (17)0.0096 (19)0.0185 (17)
S170.0620 (5)0.0550 (5)0.0527 (5)−0.0016 (3)0.0070 (3)0.0084 (3)
O180.124 (2)0.173 (3)0.0551 (15)−0.023 (2)−0.0018 (15)0.0306 (16)
O190.1003 (18)0.0507 (16)0.172 (3)0.0158 (13)0.0536 (18)0.0300 (16)
O200.0605 (14)0.159 (3)0.0864 (18)−0.0124 (15)0.0026 (13)−0.0175 (17)
C210.077 (3)0.081 (3)0.122 (4)0.005 (2)0.007 (2)−0.023 (3)
F220.144 (3)0.345 (6)0.097 (2)0.028 (3)0.044 (2)−0.063 (3)
F230.177 (3)0.085 (2)0.331 (6)−0.001 (2)0.047 (3)−0.088 (3)
F240.0666 (14)0.132 (2)0.199 (3)0.0187 (13)0.0096 (15)−0.057 (2)
C1—C21.346 (4)C9—C111.414 (4)
C1—C111.421 (4)C9—S151.754 (3)
C1—H10.9300N10—C121.347 (3)
C2—C31.407 (5)N10—C141.351 (3)
C2—H20.9300N10—H100.860 (18)
C3—C41.354 (4)C11—C121.420 (4)
C3—H30.9300C13—C141.419 (4)
C4—C121.407 (4)S15—C161.807 (4)
C4—H40.9300C16—H16A0.9600
C5—C61.365 (5)C16—H16B0.9600
C5—C141.417 (4)C16—H16C0.9600
C5—H50.9300S17—O181.393 (3)
C6—C71.394 (5)S17—O201.411 (2)
C6—H60.9300S17—O191.426 (3)
C7—C81.346 (4)S17—C211.803 (5)
C7—H71.00 (4)C21—F221.289 (6)
C8—C131.433 (4)C21—F231.312 (5)
C8—H80.9300C21—F241.310 (5)
C9—C131.412 (4)
C2—C1—C11120.6 (3)C9—C11—C1124.0 (3)
C2—C1—H1119.7C12—C11—C1117.1 (2)
C11—C1—H1119.7N10—C12—C4119.6 (3)
C1—C2—C3121.4 (3)N10—C12—C11119.4 (2)
C1—C2—H2119.3C4—C12—C11121.1 (3)
C3—C2—H2119.3C9—C13—C14119.0 (2)
C4—C3—C2120.5 (3)C9—C13—C8123.7 (3)
C4—C3—H3119.7C14—C13—C8117.3 (2)
C2—C3—H3119.7N10—C14—C13119.4 (2)
C3—C4—C12119.2 (3)N10—C14—C5119.9 (3)
C3—C4—H4120.4C13—C14—C5120.8 (3)
C12—C4—H4120.4C9—S15—C16102.83 (15)
C6—C5—C14118.5 (3)S15—C16—H16A109.5
C6—C5—H5120.7S15—C16—H16B109.5
C14—C5—H5120.7H16A—C16—H16B109.5
C5—C6—C7121.7 (3)S15—C16—H16C109.5
C5—C6—H6119.2H16A—C16—H16C109.5
C7—C6—H6119.2H16B—C16—H16C109.5
C8—C7—C6120.9 (3)O18—S17—O20115.38 (19)
C8—C7—H7121 (2)O18—S17—O19111.4 (2)
C6—C7—H7117 (2)O20—S17—O19117.40 (19)
C7—C8—C13120.8 (3)O18—S17—C21104.9 (2)
C7—C8—H8119.6O20—S17—C21104.20 (19)
C13—C8—H8119.6O19—S17—C21101.4 (2)
C13—C9—C11119.5 (2)F22—C21—F23105.0 (5)
C13—C9—S15119.1 (2)F22—C21—F24108.3 (4)
C11—C9—S15121.4 (2)F23—C21—F24108.2 (4)
C12—N10—C14123.7 (2)F22—C21—S17111.9 (3)
C12—N10—H10124 (2)F23—C21—S17110.5 (4)
C14—N10—H10112 (2)F24—C21—S17112.7 (3)
C9—C11—C12118.9 (2)
C11—C1—C2—C3−0.4 (5)S15—C9—C13—C8−2.4 (3)
C1—C2—C3—C42.2 (5)C7—C8—C13—C9−178.6 (2)
C2—C3—C4—C12−1.0 (5)C7—C8—C13—C14−0.6 (4)
C14—C5—C6—C70.8 (4)C12—N10—C14—C13−1.0 (4)
C5—C6—C7—C8−0.2 (5)C12—N10—C14—C5−179.6 (2)
C6—C7—C8—C130.1 (4)C9—C13—C14—N100.7 (3)
C13—C9—C11—C12−4.4 (3)C8—C13—C14—N10−177.4 (2)
S15—C9—C11—C12178.03 (18)C9—C13—C14—C5179.3 (2)
C13—C9—C11—C1175.3 (2)C8—C13—C14—C51.2 (3)
S15—C9—C11—C1−2.3 (3)C6—C5—C14—N10177.3 (2)
C2—C1—C11—C9177.8 (3)C6—C5—C14—C13−1.3 (4)
C2—C1—C11—C12−2.5 (4)C13—C9—S15—C16120.7 (2)
C14—N10—C12—C4179.4 (2)C11—C9—S15—C16−61.7 (2)
C14—N10—C12—C11−1.4 (4)O18—S17—C21—F22177.1 (4)
C3—C4—C12—N10177.3 (3)O20—S17—C21—F2255.5 (4)
C3—C4—C12—C11−1.9 (4)O19—S17—C21—F22−66.9 (4)
C9—C11—C12—N104.2 (4)O18—S17—C21—F2360.6 (4)
C1—C11—C12—N10−175.6 (2)O20—S17—C21—F23−61.0 (4)
C9—C11—C12—C4−176.7 (2)O19—S17—C21—F23176.6 (4)
C1—C11—C12—C43.6 (4)O18—S17—C21—F24−60.6 (4)
C11—C9—C13—C142.0 (3)O20—S17—C21—F24177.8 (4)
S15—C9—C13—C14179.63 (17)O19—S17—C21—F2455.4 (4)
C11—C9—C13—C8−180.0 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···O18i0.99 (4)2.38 (4)3.315 (5)158 (3)
N10—H10···O190.86 (2)1.86 (2)2.712 (4)172 (3)
CgICgJCg···CgDihedral angleInterplanar distanceOffset
Cg1Cg1ii3.827 (2)0.03.468 (2)1.618 (2)
Cg1Cg3ii3.634 (2)1.443.474 (2)1.066 (2)
Cg1Cg3iii3.810 (2)1.443.412 (2)1.695 (2)
Cg2Cg3ii3.830 (2)3.963.492 (2)1.573 (2)
Cg3Cg1ii3.634 (2)1.443.483 (2)1.037 (2)
Cg3Cg1iii3.810 (2)1.443.386 (2)1.747 (2)
Cg3Cg2ii3.830 (2)3.963.449 (2)1.665 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O18i0.99 (4)2.38 (4)3.315 (5)158 (3)
N10—H10⋯O190.86 (2)1.86 (2)2.712 (4)172 (3)

Symmetry code: (i) .

Table 2

π–π Interactions (Å,°)

CgiCgjCgCgDihedral angleInterplanar distanceOffset
Cg1Cg1ii3.827 (2)0.03.468 (2)1.618 (2)
Cg1Cg3ii3.634 (2)1.43.474 (2)1.066 (2)
Cg1Cg3iii3.810 (2)1.43.412 (2)1.695 (2)
Cg2Cg3ii3.830 (2)4.03.492 (2)1.573 (2)
Cg3Cg1ii3.634 (2)1.43.483 (2)1.037 (2)
Cg3Cg1iii3.810 (2)1.43.386 (2)1.747 (2)
Cg3Cg2ii3.830 (2)4.03.449 (2)1.665 (2)

Symmetry codes: (ii) ; (iii) . Notes: Cg1, Cg2 and Cg3 are the centroids of the C9/N10/C11–C14, C1–C4/C11/C12 and C5–C8/C13/C14 rings, respectively. Cg⋯Cg is the distance between ring centroids. The dihedral angle is that between the planes of rings Cg and Cg. The interplanar distance is the perpendicular distance of Cg from ring j. The offset is the perpendicular distance of ring i from ring j.

  6 in total

1.  1,4-Dimethoxy-9(10H)-acridinone derivatives. Synthesis, DNA binding studies and trypanocidal activity.

Authors:  H Berny; N Bsiri; J J Charbit; A M Galy; J C Soyfer; J P Galy; J Barbe; D Sharples; C M Mesa Valle; C Mascaro
Journal:  Arzneimittelforschung       Date:  1992-05

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  10-Methyl- and 9,10-dimethylacridinium methyl sulfate.

Authors:  Joanna Meszko; Artur Sikorski; Olexyj M Huta; Antoni Konitz; Jerzy Błazejowski
Journal:  Acta Crystallogr C       Date:  2002-10-22       Impact factor: 1.172

4.  Experimental electron density study of the supramolecular aggregation between 4,4'-dipyridyl-N,N'-dioxide and 1,4-diiodotetrafluorobenzene at 90 K.

Authors:  Riccardo Bianchi; Alessandra Forni; Tullio Pilati
Journal:  Acta Crystallogr B       Date:  2004-09-15

5.  Origin of chemiluminescence accompanying the reaction of the 9-cyano-10-methylacridinium cation with hydrogen peroxide.

Authors:  A Wróblewska; O M Huta; S V Midyanyj; I O Patsay; J Rak; J Błazejowski
Journal:  J Org Chem       Date:  2004-03-05       Impact factor: 4.354

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  Acridinium 3,5-dicarboxy-benzoate monohydrate.

Authors:  Zohreh Derikvand; Hossein Aghabozorg; Jafar Attar Gharamaleki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

2.  9-Phenyl-10H-acridinium trifluoro-methane-sulfonate.

Authors:  Damian Trzybiński; Beata Zadykowicz; Karol Krzymiński; Artur Sikorski; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-20
  2 in total

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