| Literature DB >> 21523086 |
Zohreh Derikvand, Marilyn M Olmstead, Jafar Attar Gharamaleki.
Abstract
The title compound, C(13)H(10)N(+)·C(7)H(4)NO(4) (-)·H(2)O or (acrH)(+)(pydcH)(-)·H(2)O, is a monohydrate of acridinium cations and a mono-deprotonated pyridine-2,6-dicarb-oxy-lic acid. The structure contains a range of non-covalent inter-actions, such as O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonds, as well as π-π stacking [range of centroid-centroid distances = 3.4783 (5)-3.8059 (5) Å]. The N-H⋯O hydrogen bond between the donor acridinium cation and the carboxyl-ate acceptor is particularly strong. The average separation between the π-stacked acridinium planes is 3.42 (3) Å.Entities:
Year: 2011 PMID: 21523086 PMCID: PMC3051510 DOI: 10.1107/S1600536810053791
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10N+·C7H4NO4−·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 7626 reflections | |
| θ = 2.6–32.9° | |
| µ = 0.11 mm−1 | |
| α = 100.266 (3)° | |
| β = 93.851 (2)° | Block, yellow |
| γ = 97.766 (2)° | 0.32 × 0.23 × 0.17 mm |
| Bruker SMART APEXII diffractometer | 4403 independent reflections |
| Radiation source: fine-focus sealed tube | 4034 reflections with |
| graphite | |
| Detector resolution: 8.3 pixels mm-1 | θmax = 29.1°, θmin = 2.6° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 11632 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 4403 reflections | (Δ/σ)max < 0.001 |
| 308 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.49045 (9) | 0.63220 (8) | 0.25575 (5) | 0.02109 (15) | |
| O2 | 0.19185 (9) | 0.63670 (8) | 0.23357 (5) | 0.01783 (14) | |
| O3 | 0.62172 (10) | 0.08319 (8) | −0.08226 (5) | 0.02271 (16) | |
| O4 | 0.75469 (9) | 0.23901 (8) | 0.06409 (6) | 0.02201 (15) | |
| H4A | 0.735 (2) | 0.320 (2) | 0.1097 (13) | 0.043 (4)* | |
| O5 | 0.81245 (10) | 0.49602 (9) | 0.22739 (6) | 0.02321 (16) | |
| H5A | 0.721 (2) | 0.544 (2) | 0.2252 (13) | 0.044 (4)* | |
| H5B | 0.907 (2) | 0.560 (2) | 0.2244 (13) | 0.043 (4)* | |
| N1 | 0.22761 (10) | 0.86086 (8) | 0.39668 (6) | 0.01351 (15) | |
| H1 | 0.215 (2) | 0.771 (2) | 0.3318 (14) | 0.049 (5)* | |
| N2 | 0.46280 (10) | 0.38054 (8) | 0.09346 (5) | 0.01356 (15) | |
| C1 | 0.29254 (11) | 0.83725 (10) | 0.49119 (6) | 0.01346 (16) | |
| C2 | 0.33756 (12) | 0.68689 (11) | 0.50193 (7) | 0.01783 (18) | |
| H2 | 0.3209 (19) | 0.6010 (17) | 0.4401 (11) | 0.029 (3)* | |
| C3 | 0.40456 (13) | 0.66579 (12) | 0.59791 (8) | 0.02161 (19) | |
| H3 | 0.432 (2) | 0.5632 (18) | 0.6068 (11) | 0.034 (4)* | |
| C4 | 0.43460 (13) | 0.79225 (13) | 0.68579 (8) | 0.0226 (2) | |
| H4 | 0.486 (2) | 0.7719 (18) | 0.7514 (12) | 0.034 (4)* | |
| C5 | 0.39282 (12) | 0.93759 (12) | 0.67742 (7) | 0.01935 (18) | |
| H5 | 0.418 (2) | 1.0241 (17) | 0.7378 (11) | 0.031 (4)* | |
| C6 | 0.31603 (11) | 0.96397 (10) | 0.57969 (6) | 0.01448 (16) | |
| C7 | 0.26325 (11) | 1.10795 (10) | 0.56689 (7) | 0.01559 (17) | |
| H7 | 0.2804 (19) | 1.1941 (17) | 0.6252 (11) | 0.028 (3)* | |
| C8 | 0.19056 (11) | 1.12820 (10) | 0.46937 (7) | 0.01433 (17) | |
| C9 | 0.13152 (12) | 1.27198 (11) | 0.45221 (8) | 0.01948 (18) | |
| H9 | 0.139 (2) | 1.3590 (17) | 0.5148 (11) | 0.031 (3)* | |
| C10 | 0.06669 (13) | 1.28604 (12) | 0.35436 (9) | 0.0227 (2) | |
| H10 | 0.026 (2) | 1.3839 (18) | 0.3435 (12) | 0.037 (4)* | |
| C11 | 0.05946 (13) | 1.15875 (12) | 0.26824 (8) | 0.02219 (19) | |
| H11 | 0.016 (2) | 1.1712 (18) | 0.1989 (12) | 0.037 (4)* | |
| C12 | 0.11412 (12) | 1.01882 (11) | 0.28081 (7) | 0.01838 (18) | |
| H12 | 0.1125 (19) | 0.9325 (17) | 0.2221 (11) | 0.028 (3)* | |
| C13 | 0.17760 (11) | 1.00027 (10) | 0.38252 (6) | 0.01340 (16) | |
| C14 | 0.31558 (11) | 0.44843 (9) | 0.11517 (6) | 0.01310 (16) | |
| C15 | 0.14892 (12) | 0.39585 (11) | 0.05742 (7) | 0.01748 (17) | |
| H15 | 0.0454 (18) | 0.4460 (16) | 0.0776 (10) | 0.025 (3)* | |
| C16 | 0.13303 (13) | 0.26913 (12) | −0.02620 (7) | 0.0224 (2) | |
| H16 | 0.015 (2) | 0.2304 (19) | −0.0658 (12) | 0.039 (4)* | |
| C17 | 0.28452 (13) | 0.19891 (11) | −0.04975 (7) | 0.02011 (19) | |
| H17 | 0.280 (2) | 0.1079 (17) | −0.1077 (11) | 0.032 (4)* | |
| C18 | 0.44547 (11) | 0.25928 (10) | 0.01274 (6) | 0.01459 (16) | |
| C19 | 0.33787 (12) | 0.58364 (10) | 0.20896 (6) | 0.01463 (16) | |
| C20 | 0.61355 (12) | 0.18562 (10) | −0.00691 (7) | 0.01689 (17) |
| O1 | 0.0156 (3) | 0.0221 (3) | 0.0213 (3) | 0.0021 (2) | −0.0019 (2) | −0.0053 (2) |
| O2 | 0.0154 (3) | 0.0174 (3) | 0.0187 (3) | 0.0044 (2) | 0.0012 (2) | −0.0031 (2) |
| O3 | 0.0247 (3) | 0.0232 (3) | 0.0206 (3) | 0.0092 (3) | 0.0066 (3) | −0.0007 (3) |
| O4 | 0.0159 (3) | 0.0220 (3) | 0.0267 (4) | 0.0062 (2) | 0.0003 (3) | −0.0013 (3) |
| O5 | 0.0150 (3) | 0.0245 (4) | 0.0307 (4) | 0.0020 (3) | 0.0008 (3) | 0.0078 (3) |
| N1 | 0.0133 (3) | 0.0131 (3) | 0.0137 (3) | 0.0024 (2) | 0.0012 (2) | 0.0011 (2) |
| N2 | 0.0139 (3) | 0.0140 (3) | 0.0130 (3) | 0.0031 (2) | 0.0014 (2) | 0.0025 (2) |
| C1 | 0.0110 (3) | 0.0146 (4) | 0.0150 (4) | 0.0015 (3) | 0.0024 (3) | 0.0034 (3) |
| C2 | 0.0157 (4) | 0.0162 (4) | 0.0233 (4) | 0.0040 (3) | 0.0048 (3) | 0.0060 (3) |
| C3 | 0.0154 (4) | 0.0251 (5) | 0.0297 (5) | 0.0067 (3) | 0.0061 (3) | 0.0153 (4) |
| C4 | 0.0149 (4) | 0.0363 (5) | 0.0199 (4) | 0.0036 (4) | 0.0020 (3) | 0.0145 (4) |
| C5 | 0.0147 (4) | 0.0290 (5) | 0.0139 (4) | 0.0005 (3) | 0.0011 (3) | 0.0052 (3) |
| C6 | 0.0117 (4) | 0.0182 (4) | 0.0127 (4) | −0.0002 (3) | 0.0014 (3) | 0.0025 (3) |
| C7 | 0.0145 (4) | 0.0149 (4) | 0.0153 (4) | −0.0005 (3) | 0.0025 (3) | −0.0012 (3) |
| C8 | 0.0124 (4) | 0.0128 (4) | 0.0173 (4) | 0.0006 (3) | 0.0028 (3) | 0.0020 (3) |
| C9 | 0.0169 (4) | 0.0134 (4) | 0.0286 (5) | 0.0026 (3) | 0.0049 (3) | 0.0040 (3) |
| C10 | 0.0172 (4) | 0.0194 (4) | 0.0352 (5) | 0.0051 (3) | 0.0037 (4) | 0.0126 (4) |
| C11 | 0.0169 (4) | 0.0288 (5) | 0.0237 (4) | 0.0034 (3) | 0.0001 (3) | 0.0132 (4) |
| C12 | 0.0164 (4) | 0.0230 (4) | 0.0158 (4) | 0.0024 (3) | −0.0001 (3) | 0.0045 (3) |
| C13 | 0.0112 (3) | 0.0141 (4) | 0.0149 (4) | 0.0015 (3) | 0.0017 (3) | 0.0029 (3) |
| C14 | 0.0145 (4) | 0.0134 (4) | 0.0114 (3) | 0.0028 (3) | 0.0012 (3) | 0.0020 (3) |
| C15 | 0.0147 (4) | 0.0221 (4) | 0.0145 (4) | 0.0056 (3) | −0.0003 (3) | −0.0011 (3) |
| C16 | 0.0162 (4) | 0.0297 (5) | 0.0172 (4) | 0.0049 (3) | −0.0026 (3) | −0.0062 (3) |
| C17 | 0.0188 (4) | 0.0231 (4) | 0.0156 (4) | 0.0041 (3) | 0.0012 (3) | −0.0042 (3) |
| C18 | 0.0156 (4) | 0.0152 (4) | 0.0135 (4) | 0.0041 (3) | 0.0031 (3) | 0.0022 (3) |
| C19 | 0.0159 (4) | 0.0135 (4) | 0.0139 (4) | 0.0023 (3) | 0.0011 (3) | 0.0009 (3) |
| C20 | 0.0161 (4) | 0.0170 (4) | 0.0185 (4) | 0.0040 (3) | 0.0041 (3) | 0.0038 (3) |
| O1—C19 | 1.2403 (11) | C6—C7 | 1.3952 (12) |
| O2—C19 | 1.2806 (10) | C7—C8 | 1.3980 (12) |
| O3—C20 | 1.2126 (11) | C7—H7 | 0.955 (14) |
| O4—C20 | 1.3305 (11) | C8—C13 | 1.4256 (11) |
| O4—H4A | 0.869 (17) | C8—C9 | 1.4282 (12) |
| O5—H5A | 0.849 (18) | C9—C10 | 1.3655 (14) |
| O5—H5B | 0.845 (18) | C9—H9 | 1.002 (14) |
| N1—C1 | 1.3533 (11) | C10—C11 | 1.4204 (15) |
| N1—C13 | 1.3538 (11) | C10—H10 | 0.972 (16) |
| N1—H1 | 1.031 (17) | C11—C12 | 1.3665 (13) |
| N2—C18 | 1.3350 (11) | C11—H11 | 0.970 (16) |
| N2—C14 | 1.3415 (11) | C12—C13 | 1.4215 (12) |
| C1—C2 | 1.4199 (12) | C12—H12 | 0.969 (14) |
| C1—C6 | 1.4283 (11) | C14—C15 | 1.3885 (12) |
| C2—C3 | 1.3680 (13) | C14—C19 | 1.5194 (11) |
| C2—H2 | 0.984 (14) | C15—C16 | 1.3901 (12) |
| C3—C4 | 1.4208 (15) | C15—H15 | 0.968 (14) |
| C3—H3 | 0.966 (15) | C16—C17 | 1.3850 (13) |
| C4—C5 | 1.3617 (14) | C16—H16 | 0.977 (16) |
| C4—H4 | 0.969 (15) | C17—C18 | 1.3908 (12) |
| C5—C6 | 1.4303 (12) | C17—H17 | 0.987 (15) |
| C5—H5 | 0.975 (14) | C18—C20 | 1.5032 (12) |
| C20—O4—H4A | 112.1 (11) | C9—C10—C11 | 120.43 (9) |
| H5A—O5—H5B | 109.3 (16) | C9—C10—H10 | 119.8 (9) |
| C1—N1—C13 | 122.44 (7) | C11—C10—H10 | 119.7 (9) |
| C1—N1—H1 | 120.2 (10) | C12—C11—C10 | 121.37 (9) |
| C13—N1—H1 | 117.3 (10) | C12—C11—H11 | 119.0 (9) |
| C18—N2—C14 | 117.75 (7) | C10—C11—H11 | 119.6 (9) |
| N1—C1—C2 | 119.91 (8) | C11—C12—C13 | 119.08 (9) |
| N1—C1—C6 | 119.81 (8) | C11—C12—H12 | 121.8 (8) |
| C2—C1—C6 | 120.28 (8) | C13—C12—H12 | 119.1 (8) |
| C3—C2—C1 | 119.03 (9) | N1—C13—C12 | 119.76 (8) |
| C3—C2—H2 | 121.8 (8) | N1—C13—C8 | 119.91 (7) |
| C1—C2—H2 | 119.2 (8) | C12—C13—C8 | 120.32 (8) |
| C2—C3—C4 | 121.31 (9) | N2—C14—C15 | 122.24 (8) |
| C2—C3—H3 | 119.9 (9) | N2—C14—C19 | 116.69 (7) |
| C4—C3—H3 | 118.8 (9) | C15—C14—C19 | 121.05 (7) |
| C5—C4—C3 | 120.73 (8) | C14—C15—C16 | 119.29 (8) |
| C5—C4—H4 | 121.3 (9) | C14—C15—H15 | 119.3 (8) |
| C3—C4—H4 | 118.0 (9) | C16—C15—H15 | 121.4 (8) |
| C4—C5—C6 | 120.05 (9) | C17—C16—C15 | 118.93 (8) |
| C4—C5—H5 | 119.8 (9) | C17—C16—H16 | 121.7 (9) |
| C6—C5—H5 | 120.1 (9) | C15—C16—H16 | 119.3 (9) |
| C7—C6—C1 | 118.53 (8) | C16—C17—C18 | 117.69 (8) |
| C7—C6—C5 | 122.96 (8) | C16—C17—H17 | 122.0 (9) |
| C1—C6—C5 | 118.52 (8) | C18—C17—H17 | 120.3 (9) |
| C6—C7—C8 | 120.73 (8) | N2—C18—C17 | 124.10 (8) |
| C6—C7—H7 | 119.2 (9) | N2—C18—C20 | 115.58 (7) |
| C8—C7—H7 | 120.0 (9) | C17—C18—C20 | 120.31 (8) |
| C7—C8—C13 | 118.48 (8) | O1—C19—O2 | 125.44 (8) |
| C7—C8—C9 | 123.10 (8) | O1—C19—C14 | 119.23 (8) |
| C13—C8—C9 | 118.42 (8) | O2—C19—C14 | 115.33 (7) |
| C10—C9—C8 | 120.32 (9) | O3—C20—O4 | 121.35 (8) |
| C10—C9—H9 | 122.8 (8) | O3—C20—C18 | 122.73 (8) |
| C8—C9—H9 | 116.9 (8) | O4—C20—C18 | 115.92 (7) |
| C13—N1—C1—C2 | 178.05 (7) | C11—C12—C13—N1 | 178.23 (8) |
| C13—N1—C1—C6 | −2.15 (12) | C11—C12—C13—C8 | −2.42 (13) |
| N1—C1—C2—C3 | 179.41 (8) | C7—C8—C13—N1 | 2.91 (12) |
| C6—C1—C2—C3 | −0.39 (13) | C9—C8—C13—N1 | −178.14 (7) |
| C1—C2—C3—C4 | −1.84 (13) | C7—C8—C13—C12 | −176.43 (8) |
| C2—C3—C4—C5 | 1.74 (14) | C9—C8—C13—C12 | 2.51 (12) |
| C3—C4—C5—C6 | 0.66 (14) | C18—N2—C14—C15 | 0.51 (12) |
| N1—C1—C6—C7 | 2.80 (12) | C18—N2—C14—C19 | 178.61 (7) |
| C2—C1—C6—C7 | −177.40 (8) | N2—C14—C15—C16 | −0.32 (14) |
| N1—C1—C6—C5 | −177.12 (7) | C19—C14—C15—C16 | −178.35 (8) |
| C2—C1—C6—C5 | 2.68 (12) | C14—C15—C16—C17 | −0.15 (15) |
| C4—C5—C6—C7 | 177.28 (8) | C15—C16—C17—C18 | 0.39 (15) |
| C4—C5—C6—C1 | −2.80 (13) | C14—N2—C18—C17 | −0.24 (13) |
| C1—C6—C7—C8 | −0.59 (12) | C14—N2—C18—C20 | −178.89 (7) |
| C5—C6—C7—C8 | 179.32 (8) | C16—C17—C18—N2 | −0.21 (15) |
| C6—C7—C8—C13 | −2.20 (12) | C16—C17—C18—C20 | 178.38 (9) |
| C6—C7—C8—C9 | 178.91 (8) | N2—C14—C19—O1 | 5.15 (12) |
| C7—C8—C9—C10 | 178.03 (8) | C15—C14—C19—O1 | −176.72 (8) |
| C13—C8—C9—C10 | −0.87 (13) | N2—C14—C19—O2 | −173.96 (7) |
| C8—C9—C10—C11 | −0.86 (14) | C15—C14—C19—O2 | 4.17 (12) |
| C9—C10—C11—C12 | 0.97 (14) | N2—C18—C20—O3 | −173.96 (8) |
| C10—C11—C12—C13 | 0.68 (14) | C17—C18—C20—O3 | 7.33 (14) |
| C1—N1—C13—C12 | 178.61 (7) | N2—C18—C20—O4 | 6.37 (11) |
| C1—N1—C13—C8 | −0.74 (12) | C17—C18—C20—O4 | −172.34 (8) |
| H··· | ||||
| O4—H4A···O5 | 0.869 (17) | 1.958 (17) | 2.7604 (10) | 152.9 (16) |
| O4—H4A···N2 | 0.869 (17) | 2.182 (17) | 2.6646 (10) | 114.6 (14) |
| O5—H5A···O1 | 0.849 (18) | 2.016 (18) | 2.8421 (10) | 164.0 (16) |
| O5—H5B···O2i | 0.845 (18) | 2.134 (18) | 2.9255 (10) | 155.8 (16) |
| N1—H1···O2 | 1.031 (17) | 1.555 (18) | 2.5859 (9) | 178.6 (16) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4 | 0.869 (17) | 1.958 (17) | 2.7604 (10) | 152.9 (16) |
| O4—H4 | 0.869 (17) | 2.182 (17) | 2.6646 (10) | 114.6 (14) |
| O5—H5 | 0.849 (18) | 2.016 (18) | 2.8421 (10) | 164.0 (16) |
| O5—H5 | 0.845 (18) | 2.134 (18) | 2.9255 (10) | 155.8 (16) |
| N1—H1⋯O2 | 1.031 (17) | 1.555 (18) | 2.5859 (9) | 178.6 (16) |
Symmetry code: (i) .