Literature DB >> 21523086

Acridinium 6-carb-oxy-pyridine-2-carboxyl-ate monohydrate.

Zohreh Derikvand, Marilyn M Olmstead, Jafar Attar Gharamaleki.   

Abstract

The title compound, C(13)H(10)N(+)·C(7)H(4)NO(4) (-)·H(2)O or (acrH)(+)(pydcH)(-)·H(2)O, is a monohydrate of acridinium cations and a mono-deprotonated pyridine-2,6-dicarb-oxy-lic acid. The structure contains a range of non-covalent inter-actions, such as O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonds, as well as π-π stacking [range of centroid-centroid distances = 3.4783 (5)-3.8059 (5) Å]. The N-H⋯O hydrogen bond between the donor acridinium cation and the carboxyl-ate acceptor is particularly strong. The average separation between the π-stacked acridinium planes is 3.42 (3) Å.

Entities:  

Year:  2011        PMID: 21523086      PMCID: PMC3051510          DOI: 10.1107/S1600536810053791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of acridinium salts, see: Aghabozorg et al. (2010 ▶); Attar Gharamaleki et al. (2010 ▶); Derikvand et al. (2009 ▶, 2010 ▶); Shaameri et al. (2001 ▶); Tabatabaee et al. (2009 ▶).

Experimental

Crystal data

C13H10N+·C7H4NO4 −·H2O M = 364.35 Triclinic, a = 7.4842 (3) Å b = 8.6850 (3) Å c = 13.0305 (4) Å α = 100.266 (3)° β = 93.851 (2)° γ = 97.766 (2)° V = 822.16 (5) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 90 K 0.32 × 0.23 × 0.17 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.966, T max = 0.982 11632 measured reflections 4403 independent reflections 4034 reflections with I > 2σ(I) R int = 0.011

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.105 S = 1.07 4403 reflections 308 parameters All H-atom parameters refined Δρmax = 0.48 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053791/hg2777sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053791/hg2777Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10N+·C7H4NO4·H2OZ = 2
Mr = 364.35F(000) = 380
Triclinic, P1Dx = 1.472 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4842 (3) ÅCell parameters from 7626 reflections
b = 8.6850 (3) Åθ = 2.6–32.9°
c = 13.0305 (4) ŵ = 0.11 mm1
α = 100.266 (3)°T = 90 K
β = 93.851 (2)°Block, yellow
γ = 97.766 (2)°0.32 × 0.23 × 0.17 mm
V = 822.16 (5) Å3
Bruker SMART APEXII diffractometer4403 independent reflections
Radiation source: fine-focus sealed tube4034 reflections with I > 2σ(I)
graphiteRint = 0.011
Detector resolution: 8.3 pixels mm-1θmax = 29.1°, θmin = 2.6°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −11→11
Tmin = 0.966, Tmax = 0.982l = −17→17
11632 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105All H-atom parameters refined
S = 1.07w = 1/[σ2(Fo2) + (0.0621P)2 + 0.1884P] where P = (Fo2 + 2Fc2)/3
4403 reflections(Δ/σ)max < 0.001
308 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.49045 (9)0.63220 (8)0.25575 (5)0.02109 (15)
O20.19185 (9)0.63670 (8)0.23357 (5)0.01783 (14)
O30.62172 (10)0.08319 (8)−0.08226 (5)0.02271 (16)
O40.75469 (9)0.23901 (8)0.06409 (6)0.02201 (15)
H4A0.735 (2)0.320 (2)0.1097 (13)0.043 (4)*
O50.81245 (10)0.49602 (9)0.22739 (6)0.02321 (16)
H5A0.721 (2)0.544 (2)0.2252 (13)0.044 (4)*
H5B0.907 (2)0.560 (2)0.2244 (13)0.043 (4)*
N10.22761 (10)0.86086 (8)0.39668 (6)0.01351 (15)
H10.215 (2)0.771 (2)0.3318 (14)0.049 (5)*
N20.46280 (10)0.38054 (8)0.09346 (5)0.01356 (15)
C10.29254 (11)0.83725 (10)0.49119 (6)0.01346 (16)
C20.33756 (12)0.68689 (11)0.50193 (7)0.01783 (18)
H20.3209 (19)0.6010 (17)0.4401 (11)0.029 (3)*
C30.40456 (13)0.66579 (12)0.59791 (8)0.02161 (19)
H30.432 (2)0.5632 (18)0.6068 (11)0.034 (4)*
C40.43460 (13)0.79225 (13)0.68579 (8)0.0226 (2)
H40.486 (2)0.7719 (18)0.7514 (12)0.034 (4)*
C50.39282 (12)0.93759 (12)0.67742 (7)0.01935 (18)
H50.418 (2)1.0241 (17)0.7378 (11)0.031 (4)*
C60.31603 (11)0.96397 (10)0.57969 (6)0.01448 (16)
C70.26325 (11)1.10795 (10)0.56689 (7)0.01559 (17)
H70.2804 (19)1.1941 (17)0.6252 (11)0.028 (3)*
C80.19056 (11)1.12820 (10)0.46937 (7)0.01433 (17)
C90.13152 (12)1.27198 (11)0.45221 (8)0.01948 (18)
H90.139 (2)1.3590 (17)0.5148 (11)0.031 (3)*
C100.06669 (13)1.28604 (12)0.35436 (9)0.0227 (2)
H100.026 (2)1.3839 (18)0.3435 (12)0.037 (4)*
C110.05946 (13)1.15875 (12)0.26824 (8)0.02219 (19)
H110.016 (2)1.1712 (18)0.1989 (12)0.037 (4)*
C120.11412 (12)1.01882 (11)0.28081 (7)0.01838 (18)
H120.1125 (19)0.9325 (17)0.2221 (11)0.028 (3)*
C130.17760 (11)1.00027 (10)0.38252 (6)0.01340 (16)
C140.31558 (11)0.44843 (9)0.11517 (6)0.01310 (16)
C150.14892 (12)0.39585 (11)0.05742 (7)0.01748 (17)
H150.0454 (18)0.4460 (16)0.0776 (10)0.025 (3)*
C160.13303 (13)0.26913 (12)−0.02620 (7)0.0224 (2)
H160.015 (2)0.2304 (19)−0.0658 (12)0.039 (4)*
C170.28452 (13)0.19891 (11)−0.04975 (7)0.02011 (19)
H170.280 (2)0.1079 (17)−0.1077 (11)0.032 (4)*
C180.44547 (11)0.25928 (10)0.01274 (6)0.01459 (16)
C190.33787 (12)0.58364 (10)0.20896 (6)0.01463 (16)
C200.61355 (12)0.18562 (10)−0.00691 (7)0.01689 (17)
U11U22U33U12U13U23
O10.0156 (3)0.0221 (3)0.0213 (3)0.0021 (2)−0.0019 (2)−0.0053 (2)
O20.0154 (3)0.0174 (3)0.0187 (3)0.0044 (2)0.0012 (2)−0.0031 (2)
O30.0247 (3)0.0232 (3)0.0206 (3)0.0092 (3)0.0066 (3)−0.0007 (3)
O40.0159 (3)0.0220 (3)0.0267 (4)0.0062 (2)0.0003 (3)−0.0013 (3)
O50.0150 (3)0.0245 (4)0.0307 (4)0.0020 (3)0.0008 (3)0.0078 (3)
N10.0133 (3)0.0131 (3)0.0137 (3)0.0024 (2)0.0012 (2)0.0011 (2)
N20.0139 (3)0.0140 (3)0.0130 (3)0.0031 (2)0.0014 (2)0.0025 (2)
C10.0110 (3)0.0146 (4)0.0150 (4)0.0015 (3)0.0024 (3)0.0034 (3)
C20.0157 (4)0.0162 (4)0.0233 (4)0.0040 (3)0.0048 (3)0.0060 (3)
C30.0154 (4)0.0251 (5)0.0297 (5)0.0067 (3)0.0061 (3)0.0153 (4)
C40.0149 (4)0.0363 (5)0.0199 (4)0.0036 (4)0.0020 (3)0.0145 (4)
C50.0147 (4)0.0290 (5)0.0139 (4)0.0005 (3)0.0011 (3)0.0052 (3)
C60.0117 (4)0.0182 (4)0.0127 (4)−0.0002 (3)0.0014 (3)0.0025 (3)
C70.0145 (4)0.0149 (4)0.0153 (4)−0.0005 (3)0.0025 (3)−0.0012 (3)
C80.0124 (4)0.0128 (4)0.0173 (4)0.0006 (3)0.0028 (3)0.0020 (3)
C90.0169 (4)0.0134 (4)0.0286 (5)0.0026 (3)0.0049 (3)0.0040 (3)
C100.0172 (4)0.0194 (4)0.0352 (5)0.0051 (3)0.0037 (4)0.0126 (4)
C110.0169 (4)0.0288 (5)0.0237 (4)0.0034 (3)0.0001 (3)0.0132 (4)
C120.0164 (4)0.0230 (4)0.0158 (4)0.0024 (3)−0.0001 (3)0.0045 (3)
C130.0112 (3)0.0141 (4)0.0149 (4)0.0015 (3)0.0017 (3)0.0029 (3)
C140.0145 (4)0.0134 (4)0.0114 (3)0.0028 (3)0.0012 (3)0.0020 (3)
C150.0147 (4)0.0221 (4)0.0145 (4)0.0056 (3)−0.0003 (3)−0.0011 (3)
C160.0162 (4)0.0297 (5)0.0172 (4)0.0049 (3)−0.0026 (3)−0.0062 (3)
C170.0188 (4)0.0231 (4)0.0156 (4)0.0041 (3)0.0012 (3)−0.0042 (3)
C180.0156 (4)0.0152 (4)0.0135 (4)0.0041 (3)0.0031 (3)0.0022 (3)
C190.0159 (4)0.0135 (4)0.0139 (4)0.0023 (3)0.0011 (3)0.0009 (3)
C200.0161 (4)0.0170 (4)0.0185 (4)0.0040 (3)0.0041 (3)0.0038 (3)
O1—C191.2403 (11)C6—C71.3952 (12)
O2—C191.2806 (10)C7—C81.3980 (12)
O3—C201.2126 (11)C7—H70.955 (14)
O4—C201.3305 (11)C8—C131.4256 (11)
O4—H4A0.869 (17)C8—C91.4282 (12)
O5—H5A0.849 (18)C9—C101.3655 (14)
O5—H5B0.845 (18)C9—H91.002 (14)
N1—C11.3533 (11)C10—C111.4204 (15)
N1—C131.3538 (11)C10—H100.972 (16)
N1—H11.031 (17)C11—C121.3665 (13)
N2—C181.3350 (11)C11—H110.970 (16)
N2—C141.3415 (11)C12—C131.4215 (12)
C1—C21.4199 (12)C12—H120.969 (14)
C1—C61.4283 (11)C14—C151.3885 (12)
C2—C31.3680 (13)C14—C191.5194 (11)
C2—H20.984 (14)C15—C161.3901 (12)
C3—C41.4208 (15)C15—H150.968 (14)
C3—H30.966 (15)C16—C171.3850 (13)
C4—C51.3617 (14)C16—H160.977 (16)
C4—H40.969 (15)C17—C181.3908 (12)
C5—C61.4303 (12)C17—H170.987 (15)
C5—H50.975 (14)C18—C201.5032 (12)
C20—O4—H4A112.1 (11)C9—C10—C11120.43 (9)
H5A—O5—H5B109.3 (16)C9—C10—H10119.8 (9)
C1—N1—C13122.44 (7)C11—C10—H10119.7 (9)
C1—N1—H1120.2 (10)C12—C11—C10121.37 (9)
C13—N1—H1117.3 (10)C12—C11—H11119.0 (9)
C18—N2—C14117.75 (7)C10—C11—H11119.6 (9)
N1—C1—C2119.91 (8)C11—C12—C13119.08 (9)
N1—C1—C6119.81 (8)C11—C12—H12121.8 (8)
C2—C1—C6120.28 (8)C13—C12—H12119.1 (8)
C3—C2—C1119.03 (9)N1—C13—C12119.76 (8)
C3—C2—H2121.8 (8)N1—C13—C8119.91 (7)
C1—C2—H2119.2 (8)C12—C13—C8120.32 (8)
C2—C3—C4121.31 (9)N2—C14—C15122.24 (8)
C2—C3—H3119.9 (9)N2—C14—C19116.69 (7)
C4—C3—H3118.8 (9)C15—C14—C19121.05 (7)
C5—C4—C3120.73 (8)C14—C15—C16119.29 (8)
C5—C4—H4121.3 (9)C14—C15—H15119.3 (8)
C3—C4—H4118.0 (9)C16—C15—H15121.4 (8)
C4—C5—C6120.05 (9)C17—C16—C15118.93 (8)
C4—C5—H5119.8 (9)C17—C16—H16121.7 (9)
C6—C5—H5120.1 (9)C15—C16—H16119.3 (9)
C7—C6—C1118.53 (8)C16—C17—C18117.69 (8)
C7—C6—C5122.96 (8)C16—C17—H17122.0 (9)
C1—C6—C5118.52 (8)C18—C17—H17120.3 (9)
C6—C7—C8120.73 (8)N2—C18—C17124.10 (8)
C6—C7—H7119.2 (9)N2—C18—C20115.58 (7)
C8—C7—H7120.0 (9)C17—C18—C20120.31 (8)
C7—C8—C13118.48 (8)O1—C19—O2125.44 (8)
C7—C8—C9123.10 (8)O1—C19—C14119.23 (8)
C13—C8—C9118.42 (8)O2—C19—C14115.33 (7)
C10—C9—C8120.32 (9)O3—C20—O4121.35 (8)
C10—C9—H9122.8 (8)O3—C20—C18122.73 (8)
C8—C9—H9116.9 (8)O4—C20—C18115.92 (7)
C13—N1—C1—C2178.05 (7)C11—C12—C13—N1178.23 (8)
C13—N1—C1—C6−2.15 (12)C11—C12—C13—C8−2.42 (13)
N1—C1—C2—C3179.41 (8)C7—C8—C13—N12.91 (12)
C6—C1—C2—C3−0.39 (13)C9—C8—C13—N1−178.14 (7)
C1—C2—C3—C4−1.84 (13)C7—C8—C13—C12−176.43 (8)
C2—C3—C4—C51.74 (14)C9—C8—C13—C122.51 (12)
C3—C4—C5—C60.66 (14)C18—N2—C14—C150.51 (12)
N1—C1—C6—C72.80 (12)C18—N2—C14—C19178.61 (7)
C2—C1—C6—C7−177.40 (8)N2—C14—C15—C16−0.32 (14)
N1—C1—C6—C5−177.12 (7)C19—C14—C15—C16−178.35 (8)
C2—C1—C6—C52.68 (12)C14—C15—C16—C17−0.15 (15)
C4—C5—C6—C7177.28 (8)C15—C16—C17—C180.39 (15)
C4—C5—C6—C1−2.80 (13)C14—N2—C18—C17−0.24 (13)
C1—C6—C7—C8−0.59 (12)C14—N2—C18—C20−178.89 (7)
C5—C6—C7—C8179.32 (8)C16—C17—C18—N2−0.21 (15)
C6—C7—C8—C13−2.20 (12)C16—C17—C18—C20178.38 (9)
C6—C7—C8—C9178.91 (8)N2—C14—C19—O15.15 (12)
C7—C8—C9—C10178.03 (8)C15—C14—C19—O1−176.72 (8)
C13—C8—C9—C10−0.87 (13)N2—C14—C19—O2−173.96 (7)
C8—C9—C10—C11−0.86 (14)C15—C14—C19—O24.17 (12)
C9—C10—C11—C120.97 (14)N2—C18—C20—O3−173.96 (8)
C10—C11—C12—C130.68 (14)C17—C18—C20—O37.33 (14)
C1—N1—C13—C12178.61 (7)N2—C18—C20—O46.37 (11)
C1—N1—C13—C8−0.74 (12)C17—C18—C20—O4−172.34 (8)
D—H···AD—HH···AD···AD—H···A
O4—H4A···O50.869 (17)1.958 (17)2.7604 (10)152.9 (16)
O4—H4A···N20.869 (17)2.182 (17)2.6646 (10)114.6 (14)
O5—H5A···O10.849 (18)2.016 (18)2.8421 (10)164.0 (16)
O5—H5B···O2i0.845 (18)2.134 (18)2.9255 (10)155.8 (16)
N1—H1···O21.031 (17)1.555 (18)2.5859 (9)178.6 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯O50.869 (17)1.958 (17)2.7604 (10)152.9 (16)
O4—H4A⋯N20.869 (17)2.182 (17)2.6646 (10)114.6 (14)
O5—H5A⋯O10.849 (18)2.016 (18)2.8421 (10)164.0 (16)
O5—H5B⋯O2i0.845 (18)2.134 (18)2.9255 (10)155.8 (16)
N1—H1⋯O21.031 (17)1.555 (18)2.5859 (9)178.6 (16)

Symmetry code: (i) .

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