Literature DB >> 21578940

(E)-3-Methyl-4-[(2-oxidoquinolin-1-ium-3-yl)methyl-eneamino]-1H-1,2,4-triazole-5(4H)-thione N,N-dimethyl-formamide solvate.

Jia Hao Goh, Hoong-Kun Fun, Adithya Adhikari, B Kalluraya.   

Abstract

The title 1,2,4-triazole compound, C(13)H(11)N(5)OS·C(3)H(7)NO, crystallizes as a 1:1 dimethyl-formamide (DMF) solvate. The main mol-ecule exists in a trans configuration with respect to the acyclic C=N bond. An intra-molecular C-H⋯S hydrogen bond generates an S(6) ring motif. In the synthesis, a proton is transferred from the O atom of a hydr-oxy group to the quinoline group N atom. The essentially planar triazole ring and quinoline ring system [maximum deviations of 0.001 (2) and 0.013 (2) Å, respectively] form a dihedral angle of 5.86 (9)°. In the crystal structure, mol-ecules of (E)-4-[(2-hydroxy-3--quinolyl)methyl-eneamino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione are linked into R(2) (2)(8) centrosymmteric dimers via N-H⋯O hydrogen bonds. These dimers are further linked into an extended three-dimensional structure by the DMF solvent mol-ecules via inter-molecular N-H⋯O and C-H⋯O hydrogen bonds. The crystal structure is consolidated by two different inter-molecular π-π inter-actions [centroid-centroid distances = 3.6593 (12) and 3.6892 (12) Å].

Entities:  

Year:  2009        PMID: 21578940      PMCID: PMC2972175          DOI: 10.1107/S1600536809050090

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of 1,2,4-triazole derivatives, see: Al-Soud et al. (2003 ▶); Almasirad et al. (2004 ▶); Amir & Shikha (2004 ▶); Holla et al. (2003 ▶); Turan-Zitouni et al. (2005 ▶); Walczak et al. (2004 ▶). For the pharmacological properties of quinoline derivatives, see: Janardhana et al. (2008 ▶); Kalluraya & Sreenivasa (1998 ▶). For general applications of Schiff base derivatives of 1,2,4-triazole-5-ones, see: Demirbas et al. (2004 ▶); Sujith et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For closely related structures, see: Dufresne et al. 2008 ▶; Fun et al. (2009 ▶); Song et al. (2008 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C13H11N5OS·C3H7NO M = 358.42 Monoclinic, a = 7.2374 (1) Å b = 23.4970 (4) Å c = 10.8214 (2) Å β = 107.820 (1)° V = 1751.97 (5) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.45 × 0.27 × 0.19 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.912, T max = 0.962 27543 measured reflections 5088 independent reflections 2909 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.144 S = 1.02 5088 reflections 237 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809050090/lh2959sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050090/lh2959Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N5OS·C3H7NOF(000) = 752
Mr = 358.42Dx = 1.359 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5142 reflections
a = 7.2374 (1) Åθ = 2.6–24.1°
b = 23.4970 (4) ŵ = 0.21 mm1
c = 10.8214 (2) ÅT = 296 K
β = 107.820 (1)°Block, orange
V = 1751.97 (5) Å30.45 × 0.27 × 0.19 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5088 independent reflections
Radiation source: fine-focus sealed tube2909 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 30.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.912, Tmax = 0.962k = −32→33
27543 measured reflectionsl = −14→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0578P)2 + 0.3261P] where P = (Fo2 + 2Fc2)/3
5088 reflections(Δ/σ)max < 0.001
237 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.62071 (9)0.36346 (2)0.02621 (6)0.0699 (2)
O10.9054 (2)0.46985 (6)0.34539 (13)0.0699 (4)
N11.0341 (2)0.55794 (7)0.39613 (17)0.0555 (4)
N20.7262 (2)0.50131 (6)−0.03966 (15)0.0485 (4)
N30.6254 (2)0.45953 (6)−0.12480 (14)0.0452 (3)
N40.4855 (2)0.38697 (7)−0.22893 (17)0.0554 (4)
N50.4700 (2)0.42818 (7)−0.32108 (16)0.0586 (4)
C10.9416 (3)0.51769 (8)0.30855 (19)0.0534 (5)
C21.0822 (3)0.61175 (8)0.36456 (19)0.0510 (4)
C31.1770 (3)0.65002 (9)0.4618 (2)0.0641 (5)
H3A1.20790.63970.54880.077*
C41.2241 (3)0.70310 (9)0.4275 (2)0.0698 (6)
H4A1.28540.72900.49200.084*
C51.1817 (3)0.71879 (9)0.2983 (3)0.0680 (6)
H5A1.21620.75470.27690.082*
C61.0893 (3)0.68142 (8)0.2023 (2)0.0617 (5)
H6A1.06120.69220.11570.074*
C71.0366 (3)0.62699 (8)0.23332 (19)0.0497 (4)
C80.9380 (3)0.58604 (8)0.13906 (19)0.0505 (4)
H8A0.90490.59560.05160.061*
C90.8906 (3)0.53351 (7)0.17255 (17)0.0472 (4)
C100.7858 (3)0.49056 (8)0.07984 (19)0.0526 (5)
H10A0.76300.45490.10950.063*
C110.5783 (2)0.40326 (7)−0.10719 (19)0.0485 (4)
C120.5562 (3)0.47203 (8)−0.25541 (19)0.0516 (4)
C130.5759 (3)0.52850 (9)−0.3093 (2)0.0685 (6)
H13A0.51200.5284−0.40120.103*
H13B0.71090.5372−0.29280.103*
H13C0.51750.5567−0.26900.103*
O20.3433 (2)0.27901 (6)0.71425 (18)0.0801 (5)
N60.2576 (2)0.19916 (7)0.79911 (17)0.0606 (4)
C140.3236 (3)0.25191 (9)0.8062 (2)0.0645 (6)
H14A0.35760.26970.88670.077*
C150.1949 (4)0.17088 (10)0.6743 (2)0.0841 (7)
H15A0.15980.19880.60650.126*
H15B0.08470.14730.66960.126*
H15C0.29870.14780.66430.126*
C160.2369 (5)0.16951 (13)0.9100 (3)0.1056 (10)
H16A0.25380.19570.98060.158*
H16B0.33330.14010.93500.158*
H16C0.10990.15280.88860.158*
H1N11.054 (3)0.5478 (9)0.482 (2)0.063 (6)*
H1N40.436 (3)0.3526 (10)−0.249 (2)0.070 (7)*
U11U22U33U12U13U23
S10.0962 (4)0.0476 (3)0.0632 (4)−0.0040 (3)0.0204 (3)0.0050 (2)
O10.0986 (11)0.0555 (8)0.0482 (8)−0.0161 (7)0.0116 (8)0.0012 (7)
N10.0672 (10)0.0548 (10)0.0410 (9)−0.0070 (8)0.0115 (8)−0.0036 (8)
N20.0560 (9)0.0419 (8)0.0454 (9)−0.0008 (6)0.0122 (7)−0.0048 (7)
N30.0482 (8)0.0424 (8)0.0445 (9)0.0000 (6)0.0133 (7)−0.0046 (6)
N40.0597 (10)0.0435 (9)0.0593 (11)−0.0032 (7)0.0128 (8)−0.0085 (8)
N50.0678 (10)0.0497 (9)0.0525 (10)−0.0019 (7)0.0098 (8)−0.0063 (8)
C10.0603 (11)0.0495 (11)0.0479 (11)−0.0028 (8)0.0131 (9)−0.0040 (9)
C20.0468 (10)0.0499 (10)0.0550 (12)−0.0008 (8)0.0137 (8)−0.0072 (9)
C30.0641 (12)0.0643 (13)0.0594 (13)−0.0034 (10)0.0124 (10)−0.0133 (10)
C40.0643 (13)0.0584 (13)0.0811 (17)−0.0099 (10)0.0139 (12)−0.0210 (12)
C50.0706 (13)0.0472 (11)0.0881 (18)−0.0082 (10)0.0272 (12)−0.0089 (11)
C60.0677 (12)0.0519 (11)0.0688 (14)−0.0018 (9)0.0258 (11)−0.0025 (10)
C70.0486 (10)0.0457 (10)0.0561 (12)0.0001 (7)0.0181 (9)−0.0043 (8)
C80.0568 (11)0.0498 (10)0.0458 (11)0.0006 (8)0.0169 (9)−0.0025 (9)
C90.0509 (10)0.0466 (10)0.0433 (10)0.0013 (8)0.0135 (8)−0.0030 (8)
C100.0622 (11)0.0441 (10)0.0509 (12)−0.0029 (8)0.0166 (9)−0.0017 (8)
C110.0482 (9)0.0399 (9)0.0577 (12)0.0024 (7)0.0166 (9)−0.0059 (8)
C120.0556 (10)0.0506 (10)0.0456 (11)0.0018 (8)0.0109 (8)−0.0032 (9)
C130.0890 (15)0.0562 (12)0.0549 (13)−0.0040 (11)0.0137 (11)0.0037 (10)
O20.0986 (12)0.0576 (9)0.0853 (12)−0.0178 (8)0.0299 (10)−0.0067 (9)
N60.0706 (11)0.0506 (9)0.0597 (11)−0.0023 (8)0.0185 (9)−0.0055 (8)
C140.0645 (13)0.0587 (13)0.0658 (15)−0.0008 (10)0.0131 (11)−0.0148 (11)
C150.114 (2)0.0615 (14)0.0710 (16)−0.0128 (13)0.0200 (14)−0.0153 (12)
C160.153 (3)0.094 (2)0.082 (2)−0.0127 (19)0.0536 (19)0.0069 (16)
S1—C111.668 (2)C6—C71.405 (3)
O1—C11.247 (2)C6—H6A0.9300
N1—C11.361 (2)C7—C81.425 (2)
N1—C21.382 (2)C8—C91.359 (2)
N1—H1N10.93 (2)C8—H8A0.9300
N2—C101.257 (2)C9—C101.461 (2)
N2—N31.3903 (19)C10—H10A0.9300
N3—C121.379 (2)C12—C131.474 (3)
N3—C111.393 (2)C13—H13A0.9600
N4—C111.338 (2)C13—H13B0.9600
N4—N51.370 (2)C13—H13C0.9600
N4—H1N40.88 (2)O2—C141.225 (3)
N5—C121.298 (2)N6—C141.322 (3)
C1—C91.452 (3)N6—C161.434 (3)
C2—C31.395 (3)N6—C151.448 (3)
C2—C71.403 (3)C14—H14A0.9300
C3—C41.374 (3)C15—H15A0.9600
C3—H3A0.9300C15—H15B0.9600
C4—C51.386 (3)C15—H15C0.9600
C4—H4A0.9300C16—H16A0.9600
C5—C61.369 (3)C16—H16B0.9600
C5—H5A0.9300C16—H16C0.9600
C1—N1—C2124.83 (18)C8—C9—C10124.36 (17)
C1—N1—H1N1114.3 (13)C1—C9—C10115.88 (16)
C2—N1—H1N1120.6 (13)N2—C10—C9120.68 (17)
C10—N2—N3119.03 (16)N2—C10—H10A119.7
C12—N3—N2118.77 (15)C9—C10—H10A119.7
C12—N3—C11108.36 (15)N4—C11—N3101.93 (16)
N2—N3—C11132.85 (15)N4—C11—S1126.57 (14)
C11—N4—N5114.79 (16)N3—C11—S1131.50 (14)
C11—N4—H1N4123.0 (15)N5—C12—N3110.81 (17)
N5—N4—H1N4122.2 (15)N5—C12—C13125.92 (18)
C12—N5—N4104.12 (16)N3—C12—C13123.26 (17)
O1—C1—N1120.69 (18)C12—C13—H13A109.5
O1—C1—C9122.81 (17)C12—C13—H13B109.5
N1—C1—C9116.50 (17)H13A—C13—H13B109.5
N1—C2—C3120.42 (19)C12—C13—H13C109.5
N1—C2—C7119.00 (17)H13A—C13—H13C109.5
C3—C2—C7120.58 (18)H13B—C13—H13C109.5
C4—C3—C2119.1 (2)C14—N6—C16122.4 (2)
C4—C3—H3A120.4C14—N6—C15119.25 (19)
C2—C3—H3A120.4C16—N6—C15118.30 (19)
C3—C4—C5121.2 (2)O2—C14—N6124.8 (2)
C3—C4—H4A119.4O2—C14—H14A117.6
C5—C4—H4A119.4N6—C14—H14A117.6
C6—C5—C4120.1 (2)N6—C15—H15A109.5
C6—C5—H5A120.0N6—C15—H15B109.5
C4—C5—H5A120.0H15A—C15—H15B109.5
C5—C6—C7120.5 (2)N6—C15—H15C109.5
C5—C6—H6A119.7H15A—C15—H15C109.5
C7—C6—H6A119.7H15B—C15—H15C109.5
C2—C7—C6118.54 (18)N6—C16—H16A109.5
C2—C7—C8117.62 (17)N6—C16—H16B109.5
C6—C7—C8123.84 (19)H16A—C16—H16B109.5
C9—C8—C7122.29 (18)N6—C16—H16C109.5
C9—C8—H8A118.9H16A—C16—H16C109.5
C7—C8—H8A118.9H16B—C16—H16C109.5
C8—C9—C1119.75 (17)
C10—N2—N3—C12178.43 (17)O1—C1—C9—C8−178.68 (18)
C10—N2—N3—C11−3.3 (3)N1—C1—C9—C80.8 (3)
C11—N4—N5—C120.1 (2)O1—C1—C9—C102.5 (3)
C2—N1—C1—O1179.27 (18)N1—C1—C9—C10−178.08 (16)
C2—N1—C1—C9−0.2 (3)N3—N2—C10—C9−179.39 (15)
C1—N1—C2—C3179.90 (18)C8—C9—C10—N2−2.6 (3)
C1—N1—C2—C7−0.9 (3)C1—C9—C10—N2176.18 (17)
N1—C2—C3—C4179.58 (19)N5—N4—C11—N3−0.2 (2)
C7—C2—C3—C40.4 (3)N5—N4—C11—S1179.90 (13)
C2—C3—C4—C5−1.0 (3)C12—N3—C11—N40.18 (18)
C3—C4—C5—C60.8 (3)N2—N3—C11—N4−178.25 (16)
C4—C5—C6—C70.0 (3)C12—N3—C11—S1−179.91 (15)
N1—C2—C7—C6−178.83 (17)N2—N3—C11—S11.7 (3)
C3—C2—C7—C60.3 (3)N4—N5—C12—N30.0 (2)
N1—C2—C7—C81.4 (3)N4—N5—C12—C13−178.53 (19)
C3—C2—C7—C8−179.39 (16)N2—N3—C12—N5178.56 (15)
C5—C6—C7—C2−0.5 (3)C11—N3—C12—N5−0.1 (2)
C5—C6—C7—C8179.16 (18)N2—N3—C12—C13−2.9 (3)
C2—C7—C8—C9−0.9 (3)C11—N3—C12—C13178.46 (18)
C6—C7—C8—C9179.39 (18)C16—N6—C14—O2−179.8 (2)
C7—C8—C9—C1−0.2 (3)C15—N6—C14—O2−2.8 (3)
C7—C8—C9—C10178.53 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1i0.93 (2)1.85 (2)2.774 (2)178 (2)
N4—H1N4···O2ii0.88 (2)1.85 (2)2.736 (2)177.2 (14)
C10—H10A···S10.932.433.203 (2)140
C16—H16A···O2iii0.962.483.368 (4)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O1i 0.93 (2)1.85 (2)2.774 (2)178 (2)
N4—H1N4⋯O2ii 0.88 (2)1.85 (2)2.736 (2)177.2 (14)
C10—H10A⋯S10.932.433.203 (2)140
C16—H16A⋯O2iii 0.962.483.368 (4)153

Symmetry codes: (i) ; (ii) ; (iii) .

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