| Literature DB >> 21578940 |
Jia Hao Goh, Hoong-Kun Fun, Adithya Adhikari, B Kalluraya.
Abstract
The title 1,2,4-triazole compound, C(13)H(11)N(5)OS·C(3)H(7)NO, crystallizes as a 1:1 dimethyl-formamide (DMF) solvate. The main mol-ecule exists in a trans configuration with respect to the acyclic C=N bond. An intra-molecular C-H⋯S hydrogen bond generates an S(6) ring motif. In the synthesis, a proton is transferred from the O atom of a hydr-oxy group to the quinoline group N atom. The essentially planar triazole ring and quinoline ring system [maximum deviations of 0.001 (2) and 0.013 (2) Å, respectively] form a dihedral angle of 5.86 (9)°. In the crystal structure, mol-ecules of (E)-4-[(2-hydroxy-3--quinolyl)methyl-eneamino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione are linked into R(2) (2)(8) centrosymmteric dimers via N-H⋯O hydrogen bonds. These dimers are further linked into an extended three-dimensional structure by the DMF solvent mol-ecules via inter-molecular N-H⋯O and C-H⋯O hydrogen bonds. The crystal structure is consolidated by two different inter-molecular π-π inter-actions [centroid-centroid distances = 3.6593 (12) and 3.6892 (12) Å].Entities:
Year: 2009 PMID: 21578940 PMCID: PMC2972175 DOI: 10.1107/S1600536809050090
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H11N5OS·C3H7NO | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5142 reflections |
| θ = 2.6–24.1° | |
| µ = 0.21 mm−1 | |
| β = 107.820 (1)° | Block, orange |
| 0.45 × 0.27 × 0.19 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 5088 independent reflections |
| Radiation source: fine-focus sealed tube | 2909 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 27543 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5088 reflections | (Δ/σ)max < 0.001 |
| 237 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.62071 (9) | 0.36346 (2) | 0.02621 (6) | 0.0699 (2) | |
| O1 | 0.9054 (2) | 0.46985 (6) | 0.34539 (13) | 0.0699 (4) | |
| N1 | 1.0341 (2) | 0.55794 (7) | 0.39613 (17) | 0.0555 (4) | |
| N2 | 0.7262 (2) | 0.50131 (6) | −0.03966 (15) | 0.0485 (4) | |
| N3 | 0.6254 (2) | 0.45953 (6) | −0.12480 (14) | 0.0452 (3) | |
| N4 | 0.4855 (2) | 0.38697 (7) | −0.22893 (17) | 0.0554 (4) | |
| N5 | 0.4700 (2) | 0.42818 (7) | −0.32108 (16) | 0.0586 (4) | |
| C1 | 0.9416 (3) | 0.51769 (8) | 0.30855 (19) | 0.0534 (5) | |
| C2 | 1.0822 (3) | 0.61175 (8) | 0.36456 (19) | 0.0510 (4) | |
| C3 | 1.1770 (3) | 0.65002 (9) | 0.4618 (2) | 0.0641 (5) | |
| H3A | 1.2079 | 0.6397 | 0.5488 | 0.077* | |
| C4 | 1.2241 (3) | 0.70310 (9) | 0.4275 (2) | 0.0698 (6) | |
| H4A | 1.2854 | 0.7290 | 0.4920 | 0.084* | |
| C5 | 1.1817 (3) | 0.71879 (9) | 0.2983 (3) | 0.0680 (6) | |
| H5A | 1.2162 | 0.7547 | 0.2769 | 0.082* | |
| C6 | 1.0893 (3) | 0.68142 (8) | 0.2023 (2) | 0.0617 (5) | |
| H6A | 1.0612 | 0.6922 | 0.1157 | 0.074* | |
| C7 | 1.0366 (3) | 0.62699 (8) | 0.23332 (19) | 0.0497 (4) | |
| C8 | 0.9380 (3) | 0.58604 (8) | 0.13906 (19) | 0.0505 (4) | |
| H8A | 0.9049 | 0.5956 | 0.0516 | 0.061* | |
| C9 | 0.8906 (3) | 0.53351 (7) | 0.17255 (17) | 0.0472 (4) | |
| C10 | 0.7858 (3) | 0.49056 (8) | 0.07984 (19) | 0.0526 (5) | |
| H10A | 0.7630 | 0.4549 | 0.1095 | 0.063* | |
| C11 | 0.5783 (2) | 0.40326 (7) | −0.10719 (19) | 0.0485 (4) | |
| C12 | 0.5562 (3) | 0.47203 (8) | −0.25541 (19) | 0.0516 (4) | |
| C13 | 0.5759 (3) | 0.52850 (9) | −0.3093 (2) | 0.0685 (6) | |
| H13A | 0.5120 | 0.5284 | −0.4012 | 0.103* | |
| H13B | 0.7109 | 0.5372 | −0.2928 | 0.103* | |
| H13C | 0.5175 | 0.5567 | −0.2690 | 0.103* | |
| O2 | 0.3433 (2) | 0.27901 (6) | 0.71425 (18) | 0.0801 (5) | |
| N6 | 0.2576 (2) | 0.19916 (7) | 0.79911 (17) | 0.0606 (4) | |
| C14 | 0.3236 (3) | 0.25191 (9) | 0.8062 (2) | 0.0645 (6) | |
| H14A | 0.3576 | 0.2697 | 0.8867 | 0.077* | |
| C15 | 0.1949 (4) | 0.17088 (10) | 0.6743 (2) | 0.0841 (7) | |
| H15A | 0.1598 | 0.1988 | 0.6065 | 0.126* | |
| H15B | 0.0847 | 0.1473 | 0.6696 | 0.126* | |
| H15C | 0.2987 | 0.1478 | 0.6643 | 0.126* | |
| C16 | 0.2369 (5) | 0.16951 (13) | 0.9100 (3) | 0.1056 (10) | |
| H16A | 0.2538 | 0.1957 | 0.9806 | 0.158* | |
| H16B | 0.3333 | 0.1401 | 0.9350 | 0.158* | |
| H16C | 0.1099 | 0.1528 | 0.8886 | 0.158* | |
| H1N1 | 1.054 (3) | 0.5478 (9) | 0.482 (2) | 0.063 (6)* | |
| H1N4 | 0.436 (3) | 0.3526 (10) | −0.249 (2) | 0.070 (7)* |
| S1 | 0.0962 (4) | 0.0476 (3) | 0.0632 (4) | −0.0040 (3) | 0.0204 (3) | 0.0050 (2) |
| O1 | 0.0986 (11) | 0.0555 (8) | 0.0482 (8) | −0.0161 (7) | 0.0116 (8) | 0.0012 (7) |
| N1 | 0.0672 (10) | 0.0548 (10) | 0.0410 (9) | −0.0070 (8) | 0.0115 (8) | −0.0036 (8) |
| N2 | 0.0560 (9) | 0.0419 (8) | 0.0454 (9) | −0.0008 (6) | 0.0122 (7) | −0.0048 (7) |
| N3 | 0.0482 (8) | 0.0424 (8) | 0.0445 (9) | 0.0000 (6) | 0.0133 (7) | −0.0046 (6) |
| N4 | 0.0597 (10) | 0.0435 (9) | 0.0593 (11) | −0.0032 (7) | 0.0128 (8) | −0.0085 (8) |
| N5 | 0.0678 (10) | 0.0497 (9) | 0.0525 (10) | −0.0019 (7) | 0.0098 (8) | −0.0063 (8) |
| C1 | 0.0603 (11) | 0.0495 (11) | 0.0479 (11) | −0.0028 (8) | 0.0131 (9) | −0.0040 (9) |
| C2 | 0.0468 (10) | 0.0499 (10) | 0.0550 (12) | −0.0008 (8) | 0.0137 (8) | −0.0072 (9) |
| C3 | 0.0641 (12) | 0.0643 (13) | 0.0594 (13) | −0.0034 (10) | 0.0124 (10) | −0.0133 (10) |
| C4 | 0.0643 (13) | 0.0584 (13) | 0.0811 (17) | −0.0099 (10) | 0.0139 (12) | −0.0210 (12) |
| C5 | 0.0706 (13) | 0.0472 (11) | 0.0881 (18) | −0.0082 (10) | 0.0272 (12) | −0.0089 (11) |
| C6 | 0.0677 (12) | 0.0519 (11) | 0.0688 (14) | −0.0018 (9) | 0.0258 (11) | −0.0025 (10) |
| C7 | 0.0486 (10) | 0.0457 (10) | 0.0561 (12) | 0.0001 (7) | 0.0181 (9) | −0.0043 (8) |
| C8 | 0.0568 (11) | 0.0498 (10) | 0.0458 (11) | 0.0006 (8) | 0.0169 (9) | −0.0025 (9) |
| C9 | 0.0509 (10) | 0.0466 (10) | 0.0433 (10) | 0.0013 (8) | 0.0135 (8) | −0.0030 (8) |
| C10 | 0.0622 (11) | 0.0441 (10) | 0.0509 (12) | −0.0029 (8) | 0.0166 (9) | −0.0017 (8) |
| C11 | 0.0482 (9) | 0.0399 (9) | 0.0577 (12) | 0.0024 (7) | 0.0166 (9) | −0.0059 (8) |
| C12 | 0.0556 (10) | 0.0506 (10) | 0.0456 (11) | 0.0018 (8) | 0.0109 (8) | −0.0032 (9) |
| C13 | 0.0890 (15) | 0.0562 (12) | 0.0549 (13) | −0.0040 (11) | 0.0137 (11) | 0.0037 (10) |
| O2 | 0.0986 (12) | 0.0576 (9) | 0.0853 (12) | −0.0178 (8) | 0.0299 (10) | −0.0067 (9) |
| N6 | 0.0706 (11) | 0.0506 (9) | 0.0597 (11) | −0.0023 (8) | 0.0185 (9) | −0.0055 (8) |
| C14 | 0.0645 (13) | 0.0587 (13) | 0.0658 (15) | −0.0008 (10) | 0.0131 (11) | −0.0148 (11) |
| C15 | 0.114 (2) | 0.0615 (14) | 0.0710 (16) | −0.0128 (13) | 0.0200 (14) | −0.0153 (12) |
| C16 | 0.153 (3) | 0.094 (2) | 0.082 (2) | −0.0127 (19) | 0.0536 (19) | 0.0069 (16) |
| S1—C11 | 1.668 (2) | C6—C7 | 1.405 (3) |
| O1—C1 | 1.247 (2) | C6—H6A | 0.9300 |
| N1—C1 | 1.361 (2) | C7—C8 | 1.425 (2) |
| N1—C2 | 1.382 (2) | C8—C9 | 1.359 (2) |
| N1—H1N1 | 0.93 (2) | C8—H8A | 0.9300 |
| N2—C10 | 1.257 (2) | C9—C10 | 1.461 (2) |
| N2—N3 | 1.3903 (19) | C10—H10A | 0.9300 |
| N3—C12 | 1.379 (2) | C12—C13 | 1.474 (3) |
| N3—C11 | 1.393 (2) | C13—H13A | 0.9600 |
| N4—C11 | 1.338 (2) | C13—H13B | 0.9600 |
| N4—N5 | 1.370 (2) | C13—H13C | 0.9600 |
| N4—H1N4 | 0.88 (2) | O2—C14 | 1.225 (3) |
| N5—C12 | 1.298 (2) | N6—C14 | 1.322 (3) |
| C1—C9 | 1.452 (3) | N6—C16 | 1.434 (3) |
| C2—C3 | 1.395 (3) | N6—C15 | 1.448 (3) |
| C2—C7 | 1.403 (3) | C14—H14A | 0.9300 |
| C3—C4 | 1.374 (3) | C15—H15A | 0.9600 |
| C3—H3A | 0.9300 | C15—H15B | 0.9600 |
| C4—C5 | 1.386 (3) | C15—H15C | 0.9600 |
| C4—H4A | 0.9300 | C16—H16A | 0.9600 |
| C5—C6 | 1.369 (3) | C16—H16B | 0.9600 |
| C5—H5A | 0.9300 | C16—H16C | 0.9600 |
| C1—N1—C2 | 124.83 (18) | C8—C9—C10 | 124.36 (17) |
| C1—N1—H1N1 | 114.3 (13) | C1—C9—C10 | 115.88 (16) |
| C2—N1—H1N1 | 120.6 (13) | N2—C10—C9 | 120.68 (17) |
| C10—N2—N3 | 119.03 (16) | N2—C10—H10A | 119.7 |
| C12—N3—N2 | 118.77 (15) | C9—C10—H10A | 119.7 |
| C12—N3—C11 | 108.36 (15) | N4—C11—N3 | 101.93 (16) |
| N2—N3—C11 | 132.85 (15) | N4—C11—S1 | 126.57 (14) |
| C11—N4—N5 | 114.79 (16) | N3—C11—S1 | 131.50 (14) |
| C11—N4—H1N4 | 123.0 (15) | N5—C12—N3 | 110.81 (17) |
| N5—N4—H1N4 | 122.2 (15) | N5—C12—C13 | 125.92 (18) |
| C12—N5—N4 | 104.12 (16) | N3—C12—C13 | 123.26 (17) |
| O1—C1—N1 | 120.69 (18) | C12—C13—H13A | 109.5 |
| O1—C1—C9 | 122.81 (17) | C12—C13—H13B | 109.5 |
| N1—C1—C9 | 116.50 (17) | H13A—C13—H13B | 109.5 |
| N1—C2—C3 | 120.42 (19) | C12—C13—H13C | 109.5 |
| N1—C2—C7 | 119.00 (17) | H13A—C13—H13C | 109.5 |
| C3—C2—C7 | 120.58 (18) | H13B—C13—H13C | 109.5 |
| C4—C3—C2 | 119.1 (2) | C14—N6—C16 | 122.4 (2) |
| C4—C3—H3A | 120.4 | C14—N6—C15 | 119.25 (19) |
| C2—C3—H3A | 120.4 | C16—N6—C15 | 118.30 (19) |
| C3—C4—C5 | 121.2 (2) | O2—C14—N6 | 124.8 (2) |
| C3—C4—H4A | 119.4 | O2—C14—H14A | 117.6 |
| C5—C4—H4A | 119.4 | N6—C14—H14A | 117.6 |
| C6—C5—C4 | 120.1 (2) | N6—C15—H15A | 109.5 |
| C6—C5—H5A | 120.0 | N6—C15—H15B | 109.5 |
| C4—C5—H5A | 120.0 | H15A—C15—H15B | 109.5 |
| C5—C6—C7 | 120.5 (2) | N6—C15—H15C | 109.5 |
| C5—C6—H6A | 119.7 | H15A—C15—H15C | 109.5 |
| C7—C6—H6A | 119.7 | H15B—C15—H15C | 109.5 |
| C2—C7—C6 | 118.54 (18) | N6—C16—H16A | 109.5 |
| C2—C7—C8 | 117.62 (17) | N6—C16—H16B | 109.5 |
| C6—C7—C8 | 123.84 (19) | H16A—C16—H16B | 109.5 |
| C9—C8—C7 | 122.29 (18) | N6—C16—H16C | 109.5 |
| C9—C8—H8A | 118.9 | H16A—C16—H16C | 109.5 |
| C7—C8—H8A | 118.9 | H16B—C16—H16C | 109.5 |
| C8—C9—C1 | 119.75 (17) | ||
| C10—N2—N3—C12 | 178.43 (17) | O1—C1—C9—C8 | −178.68 (18) |
| C10—N2—N3—C11 | −3.3 (3) | N1—C1—C9—C8 | 0.8 (3) |
| C11—N4—N5—C12 | 0.1 (2) | O1—C1—C9—C10 | 2.5 (3) |
| C2—N1—C1—O1 | 179.27 (18) | N1—C1—C9—C10 | −178.08 (16) |
| C2—N1—C1—C9 | −0.2 (3) | N3—N2—C10—C9 | −179.39 (15) |
| C1—N1—C2—C3 | 179.90 (18) | C8—C9—C10—N2 | −2.6 (3) |
| C1—N1—C2—C7 | −0.9 (3) | C1—C9—C10—N2 | 176.18 (17) |
| N1—C2—C3—C4 | 179.58 (19) | N5—N4—C11—N3 | −0.2 (2) |
| C7—C2—C3—C4 | 0.4 (3) | N5—N4—C11—S1 | 179.90 (13) |
| C2—C3—C4—C5 | −1.0 (3) | C12—N3—C11—N4 | 0.18 (18) |
| C3—C4—C5—C6 | 0.8 (3) | N2—N3—C11—N4 | −178.25 (16) |
| C4—C5—C6—C7 | 0.0 (3) | C12—N3—C11—S1 | −179.91 (15) |
| N1—C2—C7—C6 | −178.83 (17) | N2—N3—C11—S1 | 1.7 (3) |
| C3—C2—C7—C6 | 0.3 (3) | N4—N5—C12—N3 | 0.0 (2) |
| N1—C2—C7—C8 | 1.4 (3) | N4—N5—C12—C13 | −178.53 (19) |
| C3—C2—C7—C8 | −179.39 (16) | N2—N3—C12—N5 | 178.56 (15) |
| C5—C6—C7—C2 | −0.5 (3) | C11—N3—C12—N5 | −0.1 (2) |
| C5—C6—C7—C8 | 179.16 (18) | N2—N3—C12—C13 | −2.9 (3) |
| C2—C7—C8—C9 | −0.9 (3) | C11—N3—C12—C13 | 178.46 (18) |
| C6—C7—C8—C9 | 179.39 (18) | C16—N6—C14—O2 | −179.8 (2) |
| C7—C8—C9—C1 | −0.2 (3) | C15—N6—C14—O2 | −2.8 (3) |
| C7—C8—C9—C10 | 178.53 (16) |
| H··· | ||||
| N1—H1N1···O1i | 0.93 (2) | 1.85 (2) | 2.774 (2) | 178 (2) |
| N4—H1N4···O2ii | 0.88 (2) | 1.85 (2) | 2.736 (2) | 177.2 (14) |
| C10—H10A···S1 | 0.93 | 2.43 | 3.203 (2) | 140 |
| C16—H16A···O2iii | 0.96 | 2.48 | 3.368 (4) | 153 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.93 (2) | 1.85 (2) | 2.774 (2) | 178 (2) |
| N4—H1 | 0.88 (2) | 1.85 (2) | 2.736 (2) | 177.2 (14) |
| C10—H10 | 0.93 | 2.43 | 3.203 (2) | 140 |
| C16—H16 | 0.96 | 2.48 | 3.368 (4) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) .