| Literature DB >> 21203127 |
Lan-Qin Chai, Yu-Jie Ding, Xiao-Qing Yang, Hai-Bo Yan, Wen-Kui Dong.
Abstract
In the mol-ecule of the title compound, C(13)H(10)ClN(3)OS, the dihedral angles between the plane through the thio-urea group and the pyridine and benzene rings are 53.08 (3) and 87.12 (3)°, respectively. The mol-ecules are linked by inter-molecular N-H⋯N hydrogen-bonding inter-actions to form a supra-molecular chain structure along the a axis. An intra-mol-ecular N-H⋯O hydrogen bond is also present.Entities:
Year: 2008 PMID: 21203127 PMCID: PMC2962040 DOI: 10.1107/S1600536808019922
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10ClN3OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1514 reflections | |
| θ = 2.5–26.6º | |
| µ = 0.43 mm−1 | |
| α = 98.336 (4)º | |
| β = 110.797 (4)º | Needle, colourless |
| γ = 112.532 (4)º | 0.32 × 0.11 × 0.07 mm |
| Bruker SMART 1000 CCD area-detector diffractometer | 2319 independent reflections |
| Radiation source: fine-focus sealed tube | 1734 reflections with |
| Monochromator: graphite | |
| θmax = 25.0º | |
| φ and ω scans | θmin = 2.2º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 3504 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2319 reflections | Δρmax = 0.20 e Å−3 |
| 172 parameters | Δρmin = −0.18 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.41414 (14) | 0.64074 (11) | 0.50918 (8) | 0.0781 (3) | |
| N1 | 0.4306 (3) | 0.5361 (2) | 0.1841 (2) | 0.0397 (5) | |
| H1 | 0.3077 | 0.4966 | 0.1477 | 0.048* | |
| N2 | 0.6871 (3) | 0.4903 (2) | 0.2029 (2) | 0.0416 (5) | |
| H2 | 0.7561 | 0.5927 | 0.2548 | 0.050* | |
| N3 | 1.0366 (3) | 0.3871 (2) | 0.1394 (2) | 0.0481 (5) | |
| O1 | 0.7112 (3) | 0.7734 (2) | 0.3311 (2) | 0.0630 (5) | |
| S1 | 0.33789 (9) | 0.24252 (8) | 0.02568 (7) | 0.0500 (2) | |
| C1 | 0.4967 (3) | 0.4294 (3) | 0.1432 (2) | 0.0370 (5) | |
| C2 | 0.5364 (4) | 0.6956 (3) | 0.2748 (3) | 0.0422 (6) | |
| C3 | 0.4139 (3) | 0.7708 (3) | 0.2962 (2) | 0.0400 (5) | |
| C4 | 0.3540 (4) | 0.7557 (3) | 0.4027 (3) | 0.0476 (6) | |
| C5 | 0.2449 (4) | 0.8281 (3) | 0.4233 (3) | 0.0560 (7) | |
| H5 | 0.2062 | 0.8177 | 0.4955 | 0.067* | |
| C6 | 0.1944 (4) | 0.9154 (3) | 0.3359 (3) | 0.0613 (8) | |
| H6 | 0.1211 | 0.9644 | 0.3490 | 0.074* | |
| C7 | 0.2513 (4) | 0.9307 (3) | 0.2296 (3) | 0.0593 (7) | |
| H7 | 0.2157 | 0.9895 | 0.1705 | 0.071* | |
| C8 | 0.3611 (4) | 0.8595 (3) | 0.2093 (3) | 0.0495 (6) | |
| H8 | 0.3997 | 0.8711 | 0.1371 | 0.059* | |
| C9 | 0.9299 (3) | 0.4610 (3) | 0.1477 (2) | 0.0411 (6) | |
| H9 | 0.9551 | 0.5586 | 0.1259 | 0.049* | |
| C10 | 0.7848 (3) | 0.3985 (3) | 0.1872 (2) | 0.0380 (5) | |
| C11 | 0.7442 (4) | 0.2524 (3) | 0.2178 (3) | 0.0481 (6) | |
| H11 | 0.6456 | 0.2070 | 0.2436 | 0.058* | |
| C12 | 0.8523 (4) | 0.1757 (3) | 0.2093 (3) | 0.0542 (7) | |
| H12 | 0.8291 | 0.0776 | 0.2300 | 0.065* | |
| C13 | 0.9953 (4) | 0.2463 (3) | 0.1697 (3) | 0.0537 (7) | |
| H13 | 1.0674 | 0.1930 | 0.1636 | 0.064* |
| Cl1 | 0.1271 (8) | 0.0975 (6) | 0.0704 (5) | 0.0861 (6) | 0.0617 (5) | 0.0496 (5) |
| N1 | 0.0341 (10) | 0.0395 (11) | 0.0488 (11) | 0.0192 (9) | 0.0225 (9) | 0.0076 (9) |
| N2 | 0.0372 (11) | 0.0368 (10) | 0.0569 (12) | 0.0195 (9) | 0.0271 (10) | 0.0101 (9) |
| N3 | 0.0439 (12) | 0.0496 (12) | 0.0650 (14) | 0.0268 (10) | 0.0339 (11) | 0.0184 (11) |
| O1 | 0.0406 (11) | 0.0539 (11) | 0.0758 (13) | 0.0192 (9) | 0.0209 (10) | −0.0069 (10) |
| S1 | 0.0487 (4) | 0.0416 (4) | 0.0571 (4) | 0.0206 (3) | 0.0259 (3) | 0.0051 (3) |
| C1 | 0.0437 (14) | 0.0408 (13) | 0.0405 (13) | 0.0244 (11) | 0.0273 (11) | 0.0160 (10) |
| C2 | 0.0426 (15) | 0.0419 (13) | 0.0447 (14) | 0.0219 (12) | 0.0227 (12) | 0.0074 (11) |
| C3 | 0.0408 (13) | 0.0356 (12) | 0.0459 (14) | 0.0206 (11) | 0.0213 (11) | 0.0071 (11) |
| C4 | 0.0624 (17) | 0.0491 (14) | 0.0487 (14) | 0.0376 (13) | 0.0297 (13) | 0.0177 (12) |
| C5 | 0.0712 (19) | 0.0653 (17) | 0.0544 (16) | 0.0448 (16) | 0.0386 (15) | 0.0170 (14) |
| C6 | 0.0686 (19) | 0.0596 (17) | 0.0696 (19) | 0.0464 (16) | 0.0307 (16) | 0.0129 (15) |
| C7 | 0.0712 (19) | 0.0516 (16) | 0.0672 (18) | 0.0404 (15) | 0.0291 (16) | 0.0236 (14) |
| C8 | 0.0577 (16) | 0.0438 (14) | 0.0540 (15) | 0.0264 (13) | 0.0293 (13) | 0.0168 (12) |
| C9 | 0.0374 (13) | 0.0396 (13) | 0.0515 (14) | 0.0198 (11) | 0.0238 (12) | 0.0142 (11) |
| C10 | 0.0388 (13) | 0.0410 (13) | 0.0432 (13) | 0.0231 (11) | 0.0236 (11) | 0.0120 (10) |
| C11 | 0.0507 (15) | 0.0512 (15) | 0.0599 (16) | 0.0269 (13) | 0.0380 (13) | 0.0222 (13) |
| C12 | 0.0630 (17) | 0.0487 (15) | 0.0750 (18) | 0.0351 (14) | 0.0422 (15) | 0.0300 (14) |
| C13 | 0.0556 (16) | 0.0537 (16) | 0.0732 (18) | 0.0373 (14) | 0.0378 (15) | 0.0220 (14) |
| Cl1—C4 | 1.734 (2) | C5—C6 | 1.372 (4) |
| N1—C2 | 1.368 (3) | C5—H5 | 0.9300 |
| N1—C1 | 1.394 (3) | C6—C7 | 1.369 (4) |
| N1—H1 | 0.8600 | C6—H6 | 0.9300 |
| N2—C1 | 1.331 (3) | C7—C8 | 1.380 (4) |
| N2—C10 | 1.422 (3) | C7—H7 | 0.9300 |
| N2—H2 | 0.8600 | C8—H8 | 0.9300 |
| N3—C13 | 1.335 (3) | C9—C10 | 1.375 (3) |
| N3—C9 | 1.340 (3) | C9—H9 | 0.9300 |
| O1—C2 | 1.217 (3) | C10—C11 | 1.381 (3) |
| S1—C1 | 1.659 (2) | C11—C12 | 1.371 (3) |
| C2—C3 | 1.508 (3) | C11—H11 | 0.9300 |
| C3—C4 | 1.385 (3) | C12—C13 | 1.373 (3) |
| C3—C8 | 1.386 (3) | C12—H12 | 0.9300 |
| C4—C5 | 1.384 (3) | C13—H13 | 0.9300 |
| C2—N1—C1 | 128.3 (2) | C7—C6—H6 | 119.8 |
| C2—N1—H1 | 115.9 | C5—C6—H6 | 119.8 |
| C1—N1—H1 | 115.9 | C6—C7—C8 | 120.5 (2) |
| C1—N2—C10 | 124.83 (19) | C6—C7—H7 | 119.7 |
| C1—N2—H2 | 117.6 | C8—C7—H7 | 119.7 |
| C10—N2—H2 | 117.6 | C7—C8—C3 | 120.1 (2) |
| C13—N3—C9 | 117.2 (2) | C7—C8—H8 | 119.9 |
| N2—C1—N1 | 115.4 (2) | C3—C8—H8 | 119.9 |
| N2—C1—S1 | 125.54 (17) | N3—C9—C10 | 122.6 (2) |
| N1—C1—S1 | 119.02 (17) | N3—C9—H9 | 118.7 |
| O1—C2—N1 | 124.8 (2) | C10—C9—H9 | 118.7 |
| O1—C2—C3 | 122.1 (2) | C9—C10—C11 | 119.2 (2) |
| N1—C2—C3 | 113.1 (2) | C9—C10—N2 | 119.10 (19) |
| C4—C3—C8 | 118.6 (2) | C11—C10—N2 | 121.6 (2) |
| C4—C3—C2 | 121.6 (2) | C12—C11—C10 | 118.6 (2) |
| C8—C3—C2 | 119.8 (2) | C12—C11—H11 | 120.7 |
| C5—C4—C3 | 121.1 (2) | C10—C11—H11 | 120.7 |
| C5—C4—Cl1 | 119.9 (2) | C11—C12—C13 | 118.8 (2) |
| C3—C4—Cl1 | 118.97 (18) | C11—C12—H12 | 120.6 |
| C6—C5—C4 | 119.2 (2) | C13—C12—H12 | 120.6 |
| C6—C5—H5 | 120.4 | N3—C13—C12 | 123.6 (2) |
| C4—C5—H5 | 120.4 | N3—C13—H13 | 118.2 |
| C7—C6—C5 | 120.4 (2) | C12—C13—H13 | 118.2 |
| C10—N2—C1—N1 | 173.77 (19) | C4—C5—C6—C7 | 0.0 (4) |
| C10—N2—C1—S1 | −7.1 (3) | C5—C6—C7—C8 | −0.4 (4) |
| C2—N1—C1—N2 | 1.6 (3) | C6—C7—C8—C3 | 0.4 (4) |
| C2—N1—C1—S1 | −177.58 (18) | C4—C3—C8—C7 | 0.0 (4) |
| C1—N1—C2—O1 | 3.2 (4) | C2—C3—C8—C7 | −179.1 (2) |
| C1—N1—C2—C3 | −178.6 (2) | C13—N3—C9—C10 | 0.8 (4) |
| O1—C2—C3—C4 | −93.6 (3) | N3—C9—C10—C11 | −1.0 (4) |
| N1—C2—C3—C4 | 88.1 (3) | N3—C9—C10—N2 | 175.7 (2) |
| O1—C2—C3—C8 | 85.4 (3) | C1—N2—C10—C9 | 129.9 (2) |
| N1—C2—C3—C8 | −92.8 (3) | C1—N2—C10—C11 | −53.4 (3) |
| C8—C3—C4—C5 | −0.4 (4) | C9—C10—C11—C12 | 0.8 (4) |
| C2—C3—C4—C5 | 178.7 (2) | N2—C10—C11—C12 | −175.8 (2) |
| C8—C3—C4—Cl1 | 178.40 (18) | C10—C11—C12—C13 | −0.5 (4) |
| C2—C3—C4—Cl1 | −2.5 (3) | C9—N3—C13—C12 | −0.5 (4) |
| C3—C4—C5—C6 | 0.4 (4) | C11—C12—C13—N3 | 0.4 (4) |
| Cl1—C4—C5—C6 | −178.4 (2) |
| H··· | ||||
| N2—H2···O1 | 0.86 | 1.98 | 2.671 (3) | 137 |
| N1—H1···N3i | 0.86 | 2.08 | 2.886 (4) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1 | 0.86 | 1.98 | 2.671 (3) | 137 |
| N1—H1⋯N3i | 0.86 | 2.08 | 2.886 (4) | 157 |
Symmetry code: (i) .