Literature DB >> 21583191

4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-allopyran-oside.

Ding Ye1, Kuan Zhang, Hua-Feng Chen, Shu-Fan Yin, Ying Li.   

Abstract

The title compound, C(21)H(24)O(11), crystallizes exclusively as the β-anomer. The substituent of the protected sugar at position C-3 is in the axial position, while all other groups are in equatorial positions. The pyran-oside ring adopts a stable chair conformation.

Entities:  

Year:  2009        PMID: 21583191      PMCID: PMC2969774          DOI: 10.1107/S1600536809018248

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis see: Chen et al. (1981 ▶); Wen et al. (2008 ▶). For the pharmacological activities of helicid derivatives, see: Fan et al. (2008 ▶), Sha et al. (1987 ▶). For related structures, see: Burkhardt et al. (2007a ▶, 2007b ▶)

Experimental

Crystal data

C21H24O11 M = 452.40 Monoclinic, a = 7.056 (4) Å b = 17.758 (6) Å c = 9.129 (3) Å β = 102.80 (4)° V = 1115.4 (8) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 291 K 0.44 × 0.42 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 4596 measured reflections 4149 independent reflections 2143 reflections with I > 2σ(I) R int = 0.029 3 standard reflections every 150 reflections intensity decay: 3.7%

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.143 S = 0.95 4149 reflections 293 parameters 1 restraint H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.20 e Å−3 Data collection: DIFRAC (Gabe & White, 1993 ▶); cell refinement: DIFRAC; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809018248/bx2200sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018248/bx2200Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24O11F(000) = 476
Mr = 452.40Dx = 1.347 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 33 reflections
a = 7.056 (4) Åθ = 4.6–9.4°
b = 17.758 (6) ŵ = 0.11 mm1
c = 9.129 (3) ÅT = 291 K
β = 102.80 (4)°Block, colourless
V = 1115.4 (8) Å30.44 × 0.42 × 0.20 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0.029
Radiation source: fine-focus sealed tubeθmax = 32.5°, θmin = 2.3°
graphiteh = −10→10
ω/2θ scansk = −25→26
4596 measured reflectionsl = −13→13
4149 independent reflections3 standard reflections every 150 reflections
2143 reflections with I > 2σ(I) intensity decay: 3.7%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0778P)2] where P = (Fo2 + 2Fc2)/3
4149 reflections(Δ/σ)max < 0.001
293 parametersΔρmax = 0.30 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4950 (3)0.63276 (10)0.1617 (2)0.0399 (4)
O20.2064 (3)0.55171 (14)−0.0604 (2)0.0526 (5)
O30.3692 (5)0.62506 (18)−0.1903 (3)0.0857 (9)
O40.2271 (3)0.48018 (11)0.2871 (2)0.0436 (4)
O5−0.0540 (3)0.52455 (15)0.3289 (4)0.0733 (8)
O60.5256 (3)0.54679 (12)0.5011 (2)0.0446 (4)
O70.3283 (4)0.48347 (14)0.6212 (3)0.0657 (7)
O80.5465 (3)0.69998 (12)0.5428 (2)0.0468 (5)
O90.2909 (5)0.7687 (2)0.5597 (4)0.1025 (12)
O100.6171 (3)0.74339 (10)0.2628 (2)0.0415 (4)
O111.2834 (4)0.88786 (18)−0.0222 (3)0.0780 (8)
C10.5854 (4)0.66770 (14)0.2979 (3)0.0370 (5)
H10.70700.64240.34540.044*
C20.4428 (4)0.67009 (15)0.4018 (3)0.0385 (6)
H20.33430.70360.35890.046*
C30.3648 (4)0.59176 (16)0.4229 (3)0.0394 (6)
H30.26270.59440.48010.047*
C40.2873 (4)0.55657 (15)0.2697 (3)0.0388 (6)
H40.17570.58580.21560.047*
C50.4441 (4)0.55511 (15)0.1781 (3)0.0382 (6)
H50.55810.52830.23520.046*
C60.3858 (4)0.52131 (17)0.0245 (3)0.0482 (7)
H6A0.48760.5304−0.02930.058*
H6B0.37230.46730.03380.058*
C70.2171 (6)0.6017 (2)−0.1706 (4)0.0620 (9)
C80.0234 (7)0.6216 (3)−0.2607 (5)0.0897 (13)
H8A0.02740.6713−0.30140.135*
H8B−0.06940.6204−0.19810.135*
H8C−0.01410.5862−0.34120.135*
C90.0503 (4)0.47285 (19)0.3242 (4)0.0528 (8)
C100.0162 (6)0.3927 (2)0.3635 (5)0.0743 (11)
H10A0.08860.38210.46340.111*
H10B0.05780.35960.29370.111*
H10C−0.11980.38510.35860.111*
C110.4840 (5)0.49291 (18)0.5944 (3)0.0535 (8)
C120.6629 (7)0.4484 (3)0.6583 (6)0.0856 (13)
H12A0.71670.46480.75910.128*
H12B0.75660.45570.59780.128*
H12C0.63030.39590.65900.128*
C130.4540 (5)0.75101 (18)0.6110 (4)0.0563 (8)
C140.5769 (7)0.7780 (3)0.7549 (5)0.0842 (13)
H14A0.53450.82730.77710.126*
H14B0.71000.78040.74650.126*
H14C0.56560.74390.83410.126*
C150.7685 (4)0.75945 (14)0.1960 (3)0.0359 (5)
C160.8011 (4)0.83541 (16)0.1761 (3)0.0430 (6)
H160.72230.87140.20690.052*
C170.9503 (4)0.85760 (16)0.1108 (3)0.0453 (7)
H170.97040.90850.09610.054*
C181.0703 (4)0.80472 (17)0.0669 (3)0.0417 (6)
C191.0361 (4)0.72875 (17)0.0863 (3)0.0460 (7)
H191.11670.69300.05680.055*
C200.8838 (4)0.70516 (16)0.1487 (3)0.0443 (6)
H200.85940.65420.15870.053*
C211.2373 (5)0.8255 (2)0.0018 (4)0.0587 (8)
H211.31260.7864−0.02240.070*
U11U22U33U12U13U23
O10.0456 (10)0.0342 (9)0.0435 (10)−0.0048 (8)0.0178 (8)0.0015 (8)
O20.0535 (12)0.0559 (12)0.0508 (11)−0.0077 (10)0.0171 (10)−0.0018 (10)
O30.101 (2)0.085 (2)0.0768 (18)−0.0286 (18)0.0309 (15)0.0115 (15)
O40.0422 (10)0.0337 (10)0.0598 (11)−0.0029 (8)0.0218 (9)0.0005 (9)
O50.0492 (13)0.0593 (16)0.121 (2)0.0022 (12)0.0392 (14)0.0042 (15)
O60.0462 (11)0.0442 (10)0.0462 (10)0.0045 (9)0.0162 (8)0.0099 (8)
O70.0768 (17)0.0592 (15)0.0691 (15)−0.0078 (13)0.0330 (13)0.0151 (13)
O80.0454 (11)0.0481 (11)0.0502 (11)−0.0016 (9)0.0177 (9)−0.0086 (9)
O90.102 (2)0.109 (3)0.097 (2)0.049 (2)0.0209 (18)−0.0315 (19)
O100.0459 (10)0.0294 (9)0.0559 (11)0.0004 (8)0.0257 (9)0.0009 (8)
O110.0760 (18)0.0810 (19)0.0855 (19)−0.0344 (15)0.0361 (15)−0.0012 (15)
C10.0399 (13)0.0320 (12)0.0432 (13)−0.0019 (10)0.0176 (11)0.0001 (11)
C20.0402 (14)0.0360 (13)0.0427 (13)0.0008 (11)0.0167 (11)−0.0013 (11)
C30.0367 (13)0.0387 (13)0.0478 (14)0.0010 (11)0.0197 (11)0.0035 (12)
C40.0374 (13)0.0300 (12)0.0521 (15)−0.0012 (11)0.0166 (11)0.0027 (11)
C50.0399 (14)0.0329 (13)0.0465 (14)−0.0001 (11)0.0195 (11)0.0010 (11)
C60.0526 (17)0.0426 (15)0.0540 (17)−0.0005 (13)0.0216 (14)−0.0051 (13)
C70.086 (3)0.0523 (19)0.0521 (18)−0.0007 (18)0.0236 (18)−0.0051 (15)
C80.099 (3)0.102 (3)0.063 (2)0.017 (3)0.006 (2)0.004 (2)
C90.0444 (16)0.0487 (18)0.070 (2)−0.0114 (15)0.0227 (14)−0.0075 (16)
C100.078 (3)0.049 (2)0.105 (3)−0.0242 (19)0.039 (2)0.005 (2)
C110.068 (2)0.0462 (17)0.0481 (16)0.0011 (15)0.0168 (15)0.0058 (14)
C120.089 (3)0.079 (3)0.088 (3)0.020 (2)0.018 (2)0.032 (2)
C130.070 (2)0.0432 (17)0.0644 (19)0.0026 (16)0.0339 (17)−0.0080 (15)
C140.096 (3)0.090 (3)0.077 (2)−0.037 (3)0.041 (2)−0.036 (2)
C150.0365 (13)0.0345 (13)0.0379 (13)−0.0017 (10)0.0108 (10)0.0020 (10)
C160.0446 (15)0.0302 (13)0.0559 (17)−0.0023 (11)0.0148 (13)−0.0053 (12)
C170.0479 (16)0.0354 (14)0.0534 (16)−0.0104 (12)0.0132 (13)−0.0016 (12)
C180.0395 (13)0.0463 (16)0.0408 (13)−0.0058 (12)0.0125 (11)0.0022 (12)
C190.0489 (16)0.0406 (15)0.0530 (16)0.0063 (13)0.0210 (13)0.0013 (12)
C200.0501 (15)0.0312 (13)0.0568 (16)0.0019 (12)0.0230 (13)0.0011 (12)
C210.0525 (18)0.070 (2)0.0581 (18)−0.0109 (17)0.0212 (15)0.0046 (17)
O1—C11.409 (3)C7—C81.474 (6)
O1—C51.441 (3)C8—H8A0.9600
O2—C71.356 (4)C8—H8B0.9600
O2—C61.435 (4)C8—H8C0.9600
O3—C71.201 (5)C9—C101.500 (5)
O4—C91.369 (4)C10—H10A0.9600
O4—C41.441 (3)C10—H10B0.9600
O5—C91.184 (4)C10—H10C0.9600
O6—C111.356 (4)C11—C121.494 (5)
O6—C31.441 (4)C12—H12A0.9600
O7—C111.189 (4)C12—H12B0.9600
O8—C131.347 (4)C12—H12C0.9600
O8—C21.435 (3)C13—C141.484 (5)
O9—C131.185 (5)C14—H14A0.9600
O10—C151.372 (3)C14—H14B0.9600
O10—C11.411 (3)C14—H14C0.9600
O11—C211.188 (5)C15—C161.387 (4)
C1—C21.529 (3)C15—C201.391 (4)
C1—H10.9800C16—C171.377 (4)
C2—C31.524 (4)C16—H160.9300
C2—H20.9800C17—C181.382 (4)
C3—C41.519 (4)C17—H170.9300
C3—H30.9800C18—C191.389 (4)
C4—C51.528 (3)C18—C211.479 (4)
C4—H40.9800C19—C201.388 (4)
C5—C61.497 (4)C19—H190.9300
C5—H50.9800C20—H200.9300
C6—H6A0.9700C21—H210.9300
C6—H6B0.9700
C1—O1—C5113.85 (19)H8B—C8—H8C109.5
C7—O2—C6117.3 (3)O5—C9—O4122.9 (3)
C9—O4—C4115.1 (2)O5—C9—C10126.4 (3)
C11—O6—C3116.5 (2)O4—C9—C10110.7 (3)
C13—O8—C2117.4 (2)C9—C10—H10A109.5
C15—O10—C1118.5 (2)C9—C10—H10B109.5
O1—C1—O10106.5 (2)H10A—C10—H10B109.5
O1—C1—C2109.2 (2)C9—C10—H10C109.5
O10—C1—C2105.9 (2)H10A—C10—H10C109.5
O1—C1—H1111.7H10B—C10—H10C109.5
O10—C1—H1111.7O7—C11—O6124.5 (3)
C2—C1—H1111.7O7—C11—C12125.8 (3)
O8—C2—C3110.5 (2)O6—C11—C12109.7 (3)
O8—C2—C1107.0 (2)C11—C12—H12A109.5
C3—C2—C1111.0 (2)C11—C12—H12B109.5
O8—C2—H2109.4H12A—C12—H12B109.5
C3—C2—H2109.4C11—C12—H12C109.5
C1—C2—H2109.4H12A—C12—H12C109.5
O6—C3—C4108.2 (2)H12B—C12—H12C109.5
O6—C3—C2107.6 (2)O9—C13—O8121.5 (3)
C4—C3—C2109.0 (2)O9—C13—C14126.2 (3)
O6—C3—H3110.7O8—C13—C14112.2 (3)
C4—C3—H3110.7C13—C14—H14A109.5
C2—C3—H3110.7C13—C14—H14B109.5
O4—C4—C3109.9 (2)H14A—C14—H14B109.5
O4—C4—C5108.1 (2)C13—C14—H14C109.5
C3—C4—C5110.7 (2)H14A—C14—H14C109.5
O4—C4—H4109.3H14B—C14—H14C109.5
C3—C4—H4109.3O10—C15—C16115.4 (2)
C5—C4—H4109.3O10—C15—C20124.1 (2)
O1—C5—C6108.0 (2)C16—C15—C20120.5 (2)
O1—C5—C4105.6 (2)C17—C16—C15120.0 (3)
C6—C5—C4115.9 (2)C17—C16—H16120.0
O1—C5—H5109.0C15—C16—H16120.0
C6—C5—H5109.0C16—C17—C18120.5 (3)
C4—C5—H5109.0C16—C17—H17119.8
O2—C6—C5112.4 (2)C18—C17—H17119.8
O2—C6—H6A109.1C17—C18—C19119.2 (3)
C5—C6—H6A109.1C17—C18—C21122.7 (3)
O2—C6—H6B109.1C19—C18—C21118.0 (3)
C5—C6—H6B109.1C20—C19—C18121.2 (3)
H6A—C6—H6B107.8C20—C19—H19119.4
O3—C7—O2122.4 (4)C18—C19—H19119.4
O3—C7—C8125.6 (4)C19—C20—C15118.6 (3)
O2—C7—C8111.9 (4)C19—C20—H20120.7
C7—C8—H8A109.5C15—C20—H20120.7
C7—C8—H8B109.5O11—C21—C18125.6 (4)
H8A—C8—H8B109.5O11—C21—H21117.2
C7—C8—H8C109.5C18—C21—H21117.2
H8A—C8—H8C109.5
C5—O1—C1—O10−177.44 (19)C3—C4—C5—C6179.7 (2)
C5—O1—C1—C2−63.6 (3)C7—O2—C6—C5104.7 (3)
C15—O10—C1—O1−76.9 (3)O1—C5—C6—O2−68.4 (3)
C15—O10—C1—C2167.0 (2)C4—C5—C6—O249.8 (3)
C13—O8—C2—C3−101.7 (3)C6—O2—C7—O3−6.0 (5)
C13—O8—C2—C1137.3 (2)C6—O2—C7—C8173.2 (3)
O1—C1—C2—O8175.1 (2)C4—O4—C9—O56.4 (5)
O10—C1—C2—O8−70.7 (3)C4—O4—C9—C10−171.0 (3)
O1—C1—C2—C354.4 (3)C3—O6—C11—O7−4.2 (5)
O10—C1—C2—C3168.6 (2)C3—O6—C11—C12176.3 (3)
C11—O6—C3—C4−94.4 (3)C2—O8—C13—O92.7 (5)
C11—O6—C3—C2148.0 (2)C2—O8—C13—C14−179.5 (3)
O8—C2—C3—O6−53.2 (3)C1—O10—C15—C16−174.9 (2)
C1—C2—C3—O665.4 (3)C1—O10—C15—C205.6 (4)
O8—C2—C3—C4−170.2 (2)O10—C15—C16—C17179.6 (2)
C1—C2—C3—C4−51.7 (3)C20—C15—C16—C17−0.8 (4)
C9—O4—C4—C378.4 (3)C15—C16—C17—C18−1.1 (4)
C9—O4—C4—C5−160.6 (2)C16—C17—C18—C191.5 (4)
O6—C3—C4—O458.7 (2)C16—C17—C18—C21−177.5 (3)
C2—C3—C4—O4175.4 (2)C17—C18—C19—C200.0 (4)
O6—C3—C4—C5−60.7 (3)C21—C18—C19—C20179.1 (3)
C2—C3—C4—C556.0 (3)C18—C19—C20—C15−1.9 (4)
C1—O1—C5—C6−169.3 (2)O10—C15—C20—C19−178.2 (3)
C1—O1—C5—C466.1 (3)C16—C15—C20—C192.3 (4)
O4—C4—C5—O1178.8 (2)C17—C18—C21—O11−1.5 (5)
C3—C4—C5—O1−60.7 (3)C19—C18—C21—O11179.4 (3)
O4—C4—C5—C659.3 (3)
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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Kuan Zhang; Xue Bai; Hua-Feng Chen; Ying Li; Shu-Fan Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-31

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Authors:  Rusnah Syahila Duali Hussen; Thorsten Heidelberg; Nasrul Zamani Mohd Rodzi; Seik Weng Ng; Edward R T Tiekink
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4.  4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-glucopyran-oside.

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