| Literature DB >> 21754109 |
Thorsten Heidelberg1, Rusnah Syahila Duali Hussen, Nasrul Zamani Mohd Rodzi, Seik Weng Ng, Edward R T Tiekink.
Abstract
The pyran-oside ring in the title compound, C(21)H(24)O(11), has a chair conformation with the substituted benzene ring occupying an equatorial position. The crystal packing is dominated by C-H⋯O inter-actions that lead to the formation of supra-molecular layers in the ab plane.Entities:
Year: 2011 PMID: 21754109 PMCID: PMC3099765 DOI: 10.1107/S1600536811008099
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H24O11 | |
| Triclinic, | |
| Hall symbol: P 1 | Cu |
| Cell parameters from 7285 reflections | |
| θ = 4.0–74.1° | |
| µ = 0.94 mm−1 | |
| α = 102.473 (3)° | |
| β = 93.481 (2)° | Block, colourless |
| γ = 102.780 (3)° | 0.30 × 0.30 × 0.20 mm |
| Agilent Supernova Dual diffractometer with an Atlas detector | 4097 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 4087 reflections with |
| Mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 74.3°, θmin = 4.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7392 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 4097 reflections | Δρmax = 0.27 e Å−3 |
| 293 parameters | Δρmin = −0.17 e Å−3 |
| 3 restraints | Absolute structure: Flack (1983), 1855 Friedel pairs |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.9987 (2) | 0.49931 (15) | 0.49910 (11) | 0.0174 (3) | |
| O2 | 1.0120 (2) | 0.81529 (16) | 0.57609 (11) | 0.0218 (3) | |
| O3 | 0.7432 (3) | 0.95346 (19) | 0.63881 (14) | 0.0305 (3) | |
| O4 | 0.7892 (2) | 0.55996 (15) | 0.20730 (10) | 0.0167 (3) | |
| O5 | 0.4356 (2) | 0.59974 (16) | 0.26001 (12) | 0.0208 (3) | |
| O6 | 0.7723 (2) | 0.23423 (15) | 0.15960 (11) | 0.0192 (3) | |
| O7 | 1.0136 (3) | 0.2794 (2) | 0.01679 (14) | 0.0385 (4) | |
| O8 | 1.1640 (2) | 0.17486 (15) | 0.30105 (11) | 0.0196 (3) | |
| O9 | 0.8768 (3) | −0.04604 (17) | 0.28892 (15) | 0.0297 (3) | |
| O10 | 1.1933 (2) | 0.31718 (15) | 0.54454 (11) | 0.0204 (3) | |
| O11 | 2.0808 (3) | 0.73176 (19) | 0.92751 (14) | 0.0330 (4) | |
| C1 | 0.9617 (3) | 0.5930 (2) | 0.41525 (15) | 0.0166 (3) | |
| H1 | 1.1190 | 0.6460 | 0.3937 | 0.020* | |
| C2 | 0.8116 (3) | 0.4800 (2) | 0.30264 (15) | 0.0155 (3) | |
| H2 | 0.6503 | 0.4316 | 0.3225 | 0.019* | |
| C3 | 0.9368 (3) | 0.3515 (2) | 0.25138 (15) | 0.0163 (3) | |
| H3 | 1.0817 | 0.3980 | 0.2159 | 0.020* | |
| C4 | 1.0071 (3) | 0.2710 (2) | 0.34749 (16) | 0.0171 (3) | |
| H4 | 0.8624 | 0.2051 | 0.3712 | 0.021* | |
| C5 | 1.1452 (3) | 0.3968 (2) | 0.45629 (15) | 0.0168 (3) | |
| H5 | 1.2968 | 0.4572 | 0.4343 | 0.020* | |
| C6 | 0.8401 (3) | 0.7168 (2) | 0.47781 (16) | 0.0187 (3) | |
| H6A | 0.7979 | 0.7799 | 0.4222 | 0.022* | |
| H6B | 0.6930 | 0.6665 | 0.5080 | 0.022* | |
| C7 | 0.9388 (3) | 0.9279 (2) | 0.65168 (16) | 0.0220 (4) | |
| C8 | 1.1278 (4) | 1.0105 (3) | 0.75474 (18) | 0.0291 (4) | |
| H8A | 1.1138 | 1.1193 | 0.7845 | 0.044* | |
| H8B | 1.2855 | 1.0119 | 0.7277 | 0.044* | |
| H8C | 1.1077 | 0.9543 | 0.8194 | 0.044* | |
| C9 | 0.5824 (3) | 0.6053 (2) | 0.19069 (15) | 0.0163 (3) | |
| C10 | 0.5674 (3) | 0.6549 (3) | 0.07482 (17) | 0.0234 (4) | |
| H10A | 0.4287 | 0.7001 | 0.0685 | 0.035* | |
| H10B | 0.5507 | 0.5627 | 0.0077 | 0.035* | |
| H10C | 0.7128 | 0.7344 | 0.0721 | 0.035* | |
| C11 | 0.8311 (4) | 0.2113 (2) | 0.04513 (17) | 0.0250 (4) | |
| C12 | 0.6319 (5) | 0.0922 (3) | −0.0371 (2) | 0.0428 (6) | |
| H12A | 0.6747 | 0.0749 | −0.1195 | 0.064* | |
| H12B | 0.4866 | 0.1315 | −0.0340 | 0.064* | |
| H12C | 0.6041 | −0.0078 | −0.0117 | 0.064* | |
| C13 | 1.0775 (3) | 0.0158 (2) | 0.27726 (16) | 0.0214 (4) | |
| C14 | 1.2625 (4) | −0.0679 (3) | 0.2328 (3) | 0.0385 (5) | |
| H14A | 1.1877 | −0.1802 | 0.1990 | 0.058* | |
| H14B | 1.3833 | −0.0573 | 0.2997 | 0.058* | |
| H14C | 1.3381 | −0.0212 | 0.1706 | 0.058* | |
| C15 | 1.3937 (3) | 0.3914 (2) | 0.62530 (15) | 0.0185 (4) | |
| C16 | 1.5446 (4) | 0.2974 (3) | 0.64956 (18) | 0.0230 (4) | |
| H16 | 1.5095 | 0.1883 | 0.6104 | 0.028* | |
| C17 | 1.7455 (4) | 0.3644 (3) | 0.73110 (18) | 0.0249 (4) | |
| H17 | 1.8490 | 0.3008 | 0.7482 | 0.030* | |
| C18 | 1.7984 (3) | 0.5252 (2) | 0.78886 (16) | 0.0229 (4) | |
| C19 | 1.6452 (3) | 0.6178 (2) | 0.76354 (15) | 0.0216 (4) | |
| H19 | 1.6803 | 0.7268 | 0.8028 | 0.026* | |
| C20 | 1.4427 (3) | 0.5528 (2) | 0.68196 (16) | 0.0209 (4) | |
| H20 | 1.3390 | 0.6162 | 0.6647 | 0.025* | |
| C21 | 2.0148 (4) | 0.5937 (3) | 0.87497 (18) | 0.0279 (4) | |
| H21 | 2.1099 | 0.5244 | 0.8905 | 0.034* |
| O1 | 0.0207 (6) | 0.0178 (6) | 0.0153 (5) | 0.0077 (5) | 0.0026 (4) | 0.0040 (5) |
| O2 | 0.0222 (6) | 0.0195 (7) | 0.0197 (6) | 0.0055 (5) | −0.0015 (5) | −0.0030 (5) |
| O3 | 0.0332 (8) | 0.0268 (8) | 0.0305 (7) | 0.0149 (6) | 0.0023 (6) | −0.0032 (6) |
| O4 | 0.0163 (6) | 0.0200 (6) | 0.0160 (5) | 0.0071 (4) | 0.0020 (4) | 0.0061 (4) |
| O5 | 0.0175 (6) | 0.0221 (7) | 0.0231 (6) | 0.0063 (5) | 0.0035 (5) | 0.0043 (5) |
| O6 | 0.0202 (6) | 0.0176 (6) | 0.0160 (6) | 0.0022 (5) | −0.0017 (5) | −0.0006 (5) |
| O7 | 0.0419 (9) | 0.0422 (9) | 0.0211 (7) | −0.0038 (7) | 0.0091 (6) | −0.0018 (6) |
| O8 | 0.0178 (6) | 0.0166 (6) | 0.0245 (6) | 0.0057 (5) | 0.0023 (5) | 0.0034 (5) |
| O9 | 0.0278 (7) | 0.0171 (7) | 0.0435 (8) | 0.0040 (5) | 0.0079 (6) | 0.0062 (6) |
| O10 | 0.0231 (6) | 0.0186 (7) | 0.0203 (6) | 0.0041 (5) | −0.0020 (5) | 0.0083 (5) |
| O11 | 0.0293 (7) | 0.0380 (9) | 0.0279 (7) | 0.0037 (6) | −0.0054 (6) | 0.0066 (6) |
| C1 | 0.0191 (8) | 0.0156 (9) | 0.0157 (8) | 0.0049 (6) | 0.0017 (6) | 0.0041 (6) |
| C2 | 0.0167 (7) | 0.0166 (9) | 0.0148 (7) | 0.0051 (6) | 0.0034 (6) | 0.0054 (6) |
| C3 | 0.0162 (8) | 0.0156 (8) | 0.0150 (7) | 0.0027 (6) | −0.0006 (6) | 0.0013 (6) |
| C4 | 0.0170 (8) | 0.0148 (8) | 0.0189 (8) | 0.0043 (6) | 0.0022 (6) | 0.0022 (6) |
| C5 | 0.0183 (8) | 0.0166 (9) | 0.0164 (7) | 0.0052 (6) | 0.0010 (6) | 0.0048 (6) |
| C6 | 0.0189 (8) | 0.0167 (8) | 0.0182 (8) | 0.0039 (6) | 0.0004 (6) | 0.0000 (6) |
| C7 | 0.0286 (10) | 0.0169 (9) | 0.0206 (9) | 0.0073 (7) | 0.0045 (7) | 0.0024 (7) |
| C8 | 0.0365 (11) | 0.0227 (10) | 0.0228 (9) | 0.0043 (8) | −0.0018 (8) | −0.0014 (7) |
| C9 | 0.0154 (8) | 0.0147 (8) | 0.0176 (8) | 0.0043 (6) | −0.0011 (6) | 0.0012 (6) |
| C10 | 0.0244 (9) | 0.0298 (10) | 0.0189 (8) | 0.0116 (7) | 0.0008 (6) | 0.0075 (7) |
| C11 | 0.0334 (10) | 0.0234 (10) | 0.0172 (8) | 0.0073 (8) | 0.0028 (7) | 0.0017 (7) |
| C12 | 0.0504 (14) | 0.0434 (14) | 0.0206 (10) | −0.0062 (11) | −0.0034 (9) | −0.0024 (9) |
| C13 | 0.0243 (9) | 0.0171 (9) | 0.0224 (8) | 0.0046 (7) | −0.0001 (7) | 0.0048 (7) |
| C14 | 0.0350 (11) | 0.0218 (11) | 0.0614 (16) | 0.0118 (9) | 0.0152 (10) | 0.0073 (10) |
| C15 | 0.0191 (8) | 0.0225 (10) | 0.0161 (8) | 0.0054 (7) | 0.0032 (6) | 0.0084 (6) |
| C16 | 0.0263 (9) | 0.0229 (9) | 0.0238 (8) | 0.0090 (7) | 0.0049 (7) | 0.0102 (7) |
| C17 | 0.0243 (9) | 0.0309 (11) | 0.0258 (9) | 0.0124 (8) | 0.0043 (7) | 0.0139 (8) |
| C18 | 0.0228 (9) | 0.0310 (11) | 0.0175 (8) | 0.0068 (7) | 0.0035 (7) | 0.0101 (7) |
| C19 | 0.0254 (9) | 0.0233 (10) | 0.0160 (8) | 0.0065 (7) | 0.0019 (7) | 0.0041 (7) |
| C20 | 0.0240 (9) | 0.0229 (10) | 0.0180 (8) | 0.0085 (7) | 0.0014 (7) | 0.0070 (7) |
| C21 | 0.0223 (9) | 0.0400 (13) | 0.0235 (9) | 0.0075 (8) | 0.0010 (7) | 0.0120 (9) |
| O1—C5 | 1.413 (2) | C7—C8 | 1.499 (3) |
| O1—C1 | 1.439 (2) | C8—H8A | 0.9800 |
| O2—C7 | 1.340 (2) | C8—H8B | 0.9800 |
| O2—C6 | 1.443 (2) | C8—H8C | 0.9800 |
| O3—C7 | 1.210 (3) | C9—C10 | 1.492 (2) |
| O4—C9 | 1.361 (2) | C10—H10A | 0.9800 |
| O4—C2 | 1.443 (2) | C10—H10B | 0.9800 |
| O5—C9 | 1.199 (2) | C10—H10C | 0.9800 |
| O6—C11 | 1.360 (2) | C11—C12 | 1.497 (3) |
| O6—C3 | 1.4389 (19) | C12—H12A | 0.9800 |
| O7—C11 | 1.197 (3) | C12—H12B | 0.9800 |
| O8—C13 | 1.356 (2) | C12—H12C | 0.9800 |
| O8—C4 | 1.431 (2) | C13—C14 | 1.489 (3) |
| O9—C13 | 1.199 (3) | C14—H14A | 0.9800 |
| O10—C15 | 1.381 (2) | C14—H14B | 0.9800 |
| O10—C5 | 1.404 (2) | C14—H14C | 0.9800 |
| O11—C21 | 1.212 (3) | C15—C16 | 1.391 (3) |
| C1—C6 | 1.513 (2) | C15—C20 | 1.403 (3) |
| C1—C2 | 1.534 (2) | C16—C17 | 1.380 (3) |
| C1—H1 | 1.0000 | C16—H16 | 0.9500 |
| C2—C3 | 1.521 (2) | C17—C18 | 1.400 (3) |
| C2—H2 | 1.0000 | C17—H17 | 0.9500 |
| C3—C4 | 1.520 (2) | C18—C19 | 1.396 (3) |
| C3—H3 | 1.0000 | C18—C21 | 1.472 (3) |
| C4—C5 | 1.527 (2) | C19—C20 | 1.384 (3) |
| C4—H4 | 1.0000 | C19—H19 | 0.9500 |
| C5—H5 | 1.0000 | C20—H20 | 0.9500 |
| C6—H6A | 0.9900 | C21—H21 | 0.9500 |
| C6—H6B | 0.9900 | ||
| C5—O1—C1 | 111.07 (12) | H8B—C8—H8C | 109.5 |
| C7—O2—C6 | 116.65 (14) | O5—C9—O4 | 122.82 (15) |
| C9—O4—C2 | 117.18 (13) | O5—C9—C10 | 127.05 (16) |
| C11—O6—C3 | 117.74 (14) | O4—C9—C10 | 110.10 (14) |
| C13—O8—C4 | 117.05 (14) | C9—C10—H10A | 109.5 |
| C15—O10—C5 | 115.77 (13) | C9—C10—H10B | 109.5 |
| O1—C1—C6 | 106.88 (13) | H10A—C10—H10B | 109.5 |
| O1—C1—C2 | 107.27 (13) | C9—C10—H10C | 109.5 |
| C6—C1—C2 | 113.52 (14) | H10A—C10—H10C | 109.5 |
| O1—C1—H1 | 109.7 | H10B—C10—H10C | 109.5 |
| C6—C1—H1 | 109.7 | O7—C11—O6 | 124.08 (17) |
| C2—C1—H1 | 109.7 | O7—C11—C12 | 126.49 (19) |
| O4—C2—C3 | 104.57 (13) | O6—C11—C12 | 109.41 (17) |
| O4—C2—C1 | 111.42 (13) | C11—C12—H12A | 109.5 |
| C3—C2—C1 | 110.19 (13) | C11—C12—H12B | 109.5 |
| O4—C2—H2 | 110.2 | H12A—C12—H12B | 109.5 |
| C3—C2—H2 | 110.2 | C11—C12—H12C | 109.5 |
| C1—C2—H2 | 110.2 | H12A—C12—H12C | 109.5 |
| O6—C3—C2 | 107.91 (13) | H12B—C12—H12C | 109.5 |
| O6—C3—C4 | 108.09 (14) | O9—C13—O8 | 123.37 (18) |
| C2—C3—C4 | 111.16 (13) | O9—C13—C14 | 125.80 (19) |
| O6—C3—H3 | 109.9 | O8—C13—C14 | 110.81 (17) |
| C2—C3—H3 | 109.9 | C13—C14—H14A | 109.5 |
| C4—C3—H3 | 109.9 | C13—C14—H14B | 109.5 |
| O8—C4—C3 | 108.55 (14) | H14A—C14—H14B | 109.5 |
| O8—C4—C5 | 107.52 (13) | C13—C14—H14C | 109.5 |
| C3—C4—C5 | 109.22 (14) | H14A—C14—H14C | 109.5 |
| O8—C4—H4 | 110.5 | H14B—C14—H14C | 109.5 |
| C3—C4—H4 | 110.5 | O10—C15—C16 | 116.66 (17) |
| C5—C4—H4 | 110.5 | O10—C15—C20 | 122.13 (16) |
| O10—C5—O1 | 109.38 (13) | C16—C15—C20 | 121.21 (17) |
| O10—C5—C4 | 106.87 (14) | C17—C16—C15 | 119.31 (19) |
| O1—C5—C4 | 108.50 (13) | C17—C16—H16 | 120.3 |
| O10—C5—H5 | 110.7 | C15—C16—H16 | 120.3 |
| O1—C5—H5 | 110.7 | C16—C17—C18 | 120.59 (17) |
| C4—C5—H5 | 110.7 | C16—C17—H17 | 119.7 |
| O2—C6—C1 | 105.19 (14) | C18—C17—H17 | 119.7 |
| O2—C6—H6A | 110.7 | C19—C18—C17 | 119.37 (17) |
| C1—C6—H6A | 110.7 | C19—C18—C21 | 121.21 (18) |
| O2—C6—H6B | 110.7 | C17—C18—C21 | 119.42 (18) |
| C1—C6—H6B | 110.7 | C20—C19—C18 | 120.91 (18) |
| H6A—C6—H6B | 108.8 | C20—C19—H19 | 119.5 |
| O3—C7—O2 | 123.64 (17) | C18—C19—H19 | 119.5 |
| O3—C7—C8 | 125.73 (18) | C19—C20—C15 | 118.61 (17) |
| O2—C7—C8 | 110.58 (16) | C19—C20—H20 | 120.7 |
| C7—C8—H8A | 109.5 | C15—C20—H20 | 120.7 |
| C7—C8—H8B | 109.5 | O11—C21—C18 | 124.9 (2) |
| H8A—C8—H8B | 109.5 | O11—C21—H21 | 117.5 |
| C7—C8—H8C | 109.5 | C18—C21—H21 | 117.5 |
| H8A—C8—H8C | 109.5 | ||
| C5—O1—C1—C6 | −170.55 (13) | C3—C4—C5—O1 | 58.77 (17) |
| C5—O1—C1—C2 | 67.38 (15) | C7—O2—C6—C1 | −174.96 (14) |
| C9—O4—C2—C3 | 140.73 (14) | O1—C1—C6—O2 | 64.96 (16) |
| C9—O4—C2—C1 | −100.26 (16) | C2—C1—C6—O2 | −176.99 (13) |
| O1—C1—C2—O4 | −173.01 (13) | C6—O2—C7—O3 | −2.8 (3) |
| C6—C1—C2—O4 | 69.16 (17) | C6—O2—C7—C8 | 174.88 (15) |
| O1—C1—C2—C3 | −57.40 (16) | C2—O4—C9—O5 | 9.6 (2) |
| C6—C1—C2—C3 | −175.23 (13) | C2—O4—C9—C10 | −168.33 (15) |
| C11—O6—C3—C2 | 117.13 (16) | C3—O6—C11—O7 | 2.1 (3) |
| C11—O6—C3—C4 | −122.56 (16) | C3—O6—C11—C12 | −176.77 (19) |
| O4—C2—C3—O6 | −69.99 (15) | C4—O8—C13—O9 | 2.9 (3) |
| C1—C2—C3—O6 | 170.17 (13) | C4—O8—C13—C14 | −178.48 (17) |
| O4—C2—C3—C4 | 171.65 (13) | C5—O10—C15—C16 | −134.15 (17) |
| C1—C2—C3—C4 | 51.81 (18) | C5—O10—C15—C20 | 46.8 (2) |
| C13—O8—C4—C3 | −110.11 (16) | O10—C15—C16—C17 | −178.90 (15) |
| C13—O8—C4—C5 | 131.85 (15) | C20—C15—C16—C17 | 0.2 (3) |
| O6—C3—C4—O8 | 73.14 (16) | C15—C16—C17—C18 | −0.2 (3) |
| C2—C3—C4—O8 | −168.61 (13) | C16—C17—C18—C19 | 0.2 (3) |
| O6—C3—C4—C5 | −169.91 (13) | C16—C17—C18—C21 | −179.67 (17) |
| C2—C3—C4—C5 | −51.66 (18) | C17—C18—C19—C20 | −0.2 (3) |
| C15—O10—C5—O1 | −89.74 (17) | C21—C18—C19—C20 | 179.63 (17) |
| C15—O10—C5—C4 | 152.99 (14) | C18—C19—C20—C15 | 0.2 (3) |
| C1—O1—C5—O10 | 175.14 (12) | O10—C15—C20—C19 | 178.82 (15) |
| C1—O1—C5—C4 | −68.62 (16) | C16—C15—C20—C19 | −0.2 (3) |
| O8—C4—C5—O10 | −65.78 (16) | C19—C18—C21—O11 | −1.9 (3) |
| C3—C4—C5—O10 | 176.62 (13) | C17—C18—C21—O11 | 177.97 (19) |
| O8—C4—C5—O1 | 176.37 (13) |
| H··· | ||||
| C1—H1···O5i | 1.00 | 2.51 | 3.356 (2) | 143 |
| C3—H3···O5i | 1.00 | 2.35 | 3.207 (2) | 143 |
| C6—H6A···O9ii | 0.99 | 2.40 | 3.324 (2) | 155 |
| C8—H8C···O11iii | 0.98 | 2.54 | 3.475 (3) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1⋯O5i | 1.00 | 2.51 | 3.356 (2) | 143 |
| C3—H3⋯O5i | 1.00 | 2.35 | 3.207 (2) | 143 |
| C6—H6 | 0.99 | 2.40 | 3.324 (2) | 155 |
| C8—H8 | 0.98 | 2.54 | 3.475 (3) | 160 |
Symmetry codes: (i) ; (ii) ; (iii) .