Literature DB >> 21754109

4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-glucopyran-oside.

Thorsten Heidelberg1, Rusnah Syahila Duali Hussen, Nasrul Zamani Mohd Rodzi, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The pyran-oside ring in the title compound, C(21)H(24)O(11), has a chair conformation with the substituted benzene ring occupying an equatorial position. The crystal packing is dominated by C-H⋯O inter-actions that lead to the formation of supra-molecular layers in the ab plane.

Entities:  

Year:  2011        PMID: 21754109      PMCID: PMC3099765          DOI: 10.1107/S1600536811008099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthesis, see: Bao et al. (2004 ▶); Hongu et al. (1999 ▶); Patil & Ravindranathan Kartha (2008 ▶). For the natural anti-oxidant glucosyl­ated resveratrol, see: La Torre et al. (2004 ▶). For the biological activity of related structures, see: Wen et al. (2008 ▶); Yan et al. (2009 ▶). For the structure of the isomeric allopyran­oside and galactose derivatives, see: Ye et al. (2009 ▶); Hussen et al. (2011 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H24O11 M = 452.40 Triclinic, a = 5.7868 (2) Å b = 8.9166 (3) Å c = 11.4716 (3) Å α = 102.473 (3)° β = 93.481 (2)° γ = 102.780 (3)° V = 559.96 (3) Å3 Z = 1 Cu Kα radiation μ = 0.94 mm−1 T = 100 K 0.30 × 0.30 × 0.20 mm

Data collection

Agilent Supernova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent Technologies, 2010 ▶) T min = 0.919, T max = 1.000 7392 measured reflections 4097 independent reflections 4087 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.115 S = 1.07 4097 reflections 293 parameters 3 restraints H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), 1855 Friedel pairs Flack parameter: -0.02(12) Data collection: CrysAlis PRO (Agilent Technologies, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811008099/ez2235sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008099/ez2235Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24O11Z = 1
Mr = 452.40F(000) = 238
Triclinic, P1Dx = 1.342 Mg m3
Hall symbol: P 1Cu Kα radiation, λ = 1.54184 Å
a = 5.7868 (2) ÅCell parameters from 7285 reflections
b = 8.9166 (3) Åθ = 4.0–74.1°
c = 11.4716 (3) ŵ = 0.94 mm1
α = 102.473 (3)°T = 100 K
β = 93.481 (2)°Block, colourless
γ = 102.780 (3)°0.30 × 0.30 × 0.20 mm
V = 559.96 (3) Å3
Agilent Supernova Dual diffractometer with an Atlas detector4097 independent reflections
Radiation source: SuperNova (Cu) X-ray Source4087 reflections with I > 2σ(I)
MirrorRint = 0.021
Detector resolution: 10.4041 pixels mm-1θmax = 74.3°, θmin = 4.0°
ω scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent Technologies, 2010)k = −9→10
Tmin = 0.919, Tmax = 1.000l = −13→14
7392 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.115w = 1/[σ2(Fo2) + (0.0908P)2 + 0.072P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
4097 reflectionsΔρmax = 0.27 e Å3
293 parametersΔρmin = −0.17 e Å3
3 restraintsAbsolute structure: Flack (1983), 1855 Friedel pairs
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.9987 (2)0.49931 (15)0.49910 (11)0.0174 (3)
O21.0120 (2)0.81529 (16)0.57609 (11)0.0218 (3)
O30.7432 (3)0.95346 (19)0.63881 (14)0.0305 (3)
O40.7892 (2)0.55996 (15)0.20730 (10)0.0167 (3)
O50.4356 (2)0.59974 (16)0.26001 (12)0.0208 (3)
O60.7723 (2)0.23423 (15)0.15960 (11)0.0192 (3)
O71.0136 (3)0.2794 (2)0.01679 (14)0.0385 (4)
O81.1640 (2)0.17486 (15)0.30105 (11)0.0196 (3)
O90.8768 (3)−0.04604 (17)0.28892 (15)0.0297 (3)
O101.1933 (2)0.31718 (15)0.54454 (11)0.0204 (3)
O112.0808 (3)0.73176 (19)0.92751 (14)0.0330 (4)
C10.9617 (3)0.5930 (2)0.41525 (15)0.0166 (3)
H11.11900.64600.39370.020*
C20.8116 (3)0.4800 (2)0.30264 (15)0.0155 (3)
H20.65030.43160.32250.019*
C30.9368 (3)0.3515 (2)0.25138 (15)0.0163 (3)
H31.08170.39800.21590.020*
C41.0071 (3)0.2710 (2)0.34749 (16)0.0171 (3)
H40.86240.20510.37120.021*
C51.1452 (3)0.3968 (2)0.45629 (15)0.0168 (3)
H51.29680.45720.43430.020*
C60.8401 (3)0.7168 (2)0.47781 (16)0.0187 (3)
H6A0.79790.77990.42220.022*
H6B0.69300.66650.50800.022*
C70.9388 (3)0.9279 (2)0.65168 (16)0.0220 (4)
C81.1278 (4)1.0105 (3)0.75474 (18)0.0291 (4)
H8A1.11381.11930.78450.044*
H8B1.28551.01190.72770.044*
H8C1.10770.95430.81940.044*
C90.5824 (3)0.6053 (2)0.19069 (15)0.0163 (3)
C100.5674 (3)0.6549 (3)0.07482 (17)0.0234 (4)
H10A0.42870.70010.06850.035*
H10B0.55070.56270.00770.035*
H10C0.71280.73440.07210.035*
C110.8311 (4)0.2113 (2)0.04513 (17)0.0250 (4)
C120.6319 (5)0.0922 (3)−0.0371 (2)0.0428 (6)
H12A0.67470.0749−0.11950.064*
H12B0.48660.1315−0.03400.064*
H12C0.6041−0.0078−0.01170.064*
C131.0775 (3)0.0158 (2)0.27726 (16)0.0214 (4)
C141.2625 (4)−0.0679 (3)0.2328 (3)0.0385 (5)
H14A1.1877−0.18020.19900.058*
H14B1.3833−0.05730.29970.058*
H14C1.3381−0.02120.17060.058*
C151.3937 (3)0.3914 (2)0.62530 (15)0.0185 (4)
C161.5446 (4)0.2974 (3)0.64956 (18)0.0230 (4)
H161.50950.18830.61040.028*
C171.7455 (4)0.3644 (3)0.73110 (18)0.0249 (4)
H171.84900.30080.74820.030*
C181.7984 (3)0.5252 (2)0.78886 (16)0.0229 (4)
C191.6452 (3)0.6178 (2)0.76354 (15)0.0216 (4)
H191.68030.72680.80280.026*
C201.4427 (3)0.5528 (2)0.68196 (16)0.0209 (4)
H201.33900.61620.66470.025*
C212.0148 (4)0.5937 (3)0.87497 (18)0.0279 (4)
H212.10990.52440.89050.034*
U11U22U33U12U13U23
O10.0207 (6)0.0178 (6)0.0153 (5)0.0077 (5)0.0026 (4)0.0040 (5)
O20.0222 (6)0.0195 (7)0.0197 (6)0.0055 (5)−0.0015 (5)−0.0030 (5)
O30.0332 (8)0.0268 (8)0.0305 (7)0.0149 (6)0.0023 (6)−0.0032 (6)
O40.0163 (6)0.0200 (6)0.0160 (5)0.0071 (4)0.0020 (4)0.0061 (4)
O50.0175 (6)0.0221 (7)0.0231 (6)0.0063 (5)0.0035 (5)0.0043 (5)
O60.0202 (6)0.0176 (6)0.0160 (6)0.0022 (5)−0.0017 (5)−0.0006 (5)
O70.0419 (9)0.0422 (9)0.0211 (7)−0.0038 (7)0.0091 (6)−0.0018 (6)
O80.0178 (6)0.0166 (6)0.0245 (6)0.0057 (5)0.0023 (5)0.0034 (5)
O90.0278 (7)0.0171 (7)0.0435 (8)0.0040 (5)0.0079 (6)0.0062 (6)
O100.0231 (6)0.0186 (7)0.0203 (6)0.0041 (5)−0.0020 (5)0.0083 (5)
O110.0293 (7)0.0380 (9)0.0279 (7)0.0037 (6)−0.0054 (6)0.0066 (6)
C10.0191 (8)0.0156 (9)0.0157 (8)0.0049 (6)0.0017 (6)0.0041 (6)
C20.0167 (7)0.0166 (9)0.0148 (7)0.0051 (6)0.0034 (6)0.0054 (6)
C30.0162 (8)0.0156 (8)0.0150 (7)0.0027 (6)−0.0006 (6)0.0013 (6)
C40.0170 (8)0.0148 (8)0.0189 (8)0.0043 (6)0.0022 (6)0.0022 (6)
C50.0183 (8)0.0166 (9)0.0164 (7)0.0052 (6)0.0010 (6)0.0048 (6)
C60.0189 (8)0.0167 (8)0.0182 (8)0.0039 (6)0.0004 (6)0.0000 (6)
C70.0286 (10)0.0169 (9)0.0206 (9)0.0073 (7)0.0045 (7)0.0024 (7)
C80.0365 (11)0.0227 (10)0.0228 (9)0.0043 (8)−0.0018 (8)−0.0014 (7)
C90.0154 (8)0.0147 (8)0.0176 (8)0.0043 (6)−0.0011 (6)0.0012 (6)
C100.0244 (9)0.0298 (10)0.0189 (8)0.0116 (7)0.0008 (6)0.0075 (7)
C110.0334 (10)0.0234 (10)0.0172 (8)0.0073 (8)0.0028 (7)0.0017 (7)
C120.0504 (14)0.0434 (14)0.0206 (10)−0.0062 (11)−0.0034 (9)−0.0024 (9)
C130.0243 (9)0.0171 (9)0.0224 (8)0.0046 (7)−0.0001 (7)0.0048 (7)
C140.0350 (11)0.0218 (11)0.0614 (16)0.0118 (9)0.0152 (10)0.0073 (10)
C150.0191 (8)0.0225 (10)0.0161 (8)0.0054 (7)0.0032 (6)0.0084 (6)
C160.0263 (9)0.0229 (9)0.0238 (8)0.0090 (7)0.0049 (7)0.0102 (7)
C170.0243 (9)0.0309 (11)0.0258 (9)0.0124 (8)0.0043 (7)0.0139 (8)
C180.0228 (9)0.0310 (11)0.0175 (8)0.0068 (7)0.0035 (7)0.0101 (7)
C190.0254 (9)0.0233 (10)0.0160 (8)0.0065 (7)0.0019 (7)0.0041 (7)
C200.0240 (9)0.0229 (10)0.0180 (8)0.0085 (7)0.0014 (7)0.0070 (7)
C210.0223 (9)0.0400 (13)0.0235 (9)0.0075 (8)0.0010 (7)0.0120 (9)
O1—C51.413 (2)C7—C81.499 (3)
O1—C11.439 (2)C8—H8A0.9800
O2—C71.340 (2)C8—H8B0.9800
O2—C61.443 (2)C8—H8C0.9800
O3—C71.210 (3)C9—C101.492 (2)
O4—C91.361 (2)C10—H10A0.9800
O4—C21.443 (2)C10—H10B0.9800
O5—C91.199 (2)C10—H10C0.9800
O6—C111.360 (2)C11—C121.497 (3)
O6—C31.4389 (19)C12—H12A0.9800
O7—C111.197 (3)C12—H12B0.9800
O8—C131.356 (2)C12—H12C0.9800
O8—C41.431 (2)C13—C141.489 (3)
O9—C131.199 (3)C14—H14A0.9800
O10—C151.381 (2)C14—H14B0.9800
O10—C51.404 (2)C14—H14C0.9800
O11—C211.212 (3)C15—C161.391 (3)
C1—C61.513 (2)C15—C201.403 (3)
C1—C21.534 (2)C16—C171.380 (3)
C1—H11.0000C16—H160.9500
C2—C31.521 (2)C17—C181.400 (3)
C2—H21.0000C17—H170.9500
C3—C41.520 (2)C18—C191.396 (3)
C3—H31.0000C18—C211.472 (3)
C4—C51.527 (2)C19—C201.384 (3)
C4—H41.0000C19—H190.9500
C5—H51.0000C20—H200.9500
C6—H6A0.9900C21—H210.9500
C6—H6B0.9900
C5—O1—C1111.07 (12)H8B—C8—H8C109.5
C7—O2—C6116.65 (14)O5—C9—O4122.82 (15)
C9—O4—C2117.18 (13)O5—C9—C10127.05 (16)
C11—O6—C3117.74 (14)O4—C9—C10110.10 (14)
C13—O8—C4117.05 (14)C9—C10—H10A109.5
C15—O10—C5115.77 (13)C9—C10—H10B109.5
O1—C1—C6106.88 (13)H10A—C10—H10B109.5
O1—C1—C2107.27 (13)C9—C10—H10C109.5
C6—C1—C2113.52 (14)H10A—C10—H10C109.5
O1—C1—H1109.7H10B—C10—H10C109.5
C6—C1—H1109.7O7—C11—O6124.08 (17)
C2—C1—H1109.7O7—C11—C12126.49 (19)
O4—C2—C3104.57 (13)O6—C11—C12109.41 (17)
O4—C2—C1111.42 (13)C11—C12—H12A109.5
C3—C2—C1110.19 (13)C11—C12—H12B109.5
O4—C2—H2110.2H12A—C12—H12B109.5
C3—C2—H2110.2C11—C12—H12C109.5
C1—C2—H2110.2H12A—C12—H12C109.5
O6—C3—C2107.91 (13)H12B—C12—H12C109.5
O6—C3—C4108.09 (14)O9—C13—O8123.37 (18)
C2—C3—C4111.16 (13)O9—C13—C14125.80 (19)
O6—C3—H3109.9O8—C13—C14110.81 (17)
C2—C3—H3109.9C13—C14—H14A109.5
C4—C3—H3109.9C13—C14—H14B109.5
O8—C4—C3108.55 (14)H14A—C14—H14B109.5
O8—C4—C5107.52 (13)C13—C14—H14C109.5
C3—C4—C5109.22 (14)H14A—C14—H14C109.5
O8—C4—H4110.5H14B—C14—H14C109.5
C3—C4—H4110.5O10—C15—C16116.66 (17)
C5—C4—H4110.5O10—C15—C20122.13 (16)
O10—C5—O1109.38 (13)C16—C15—C20121.21 (17)
O10—C5—C4106.87 (14)C17—C16—C15119.31 (19)
O1—C5—C4108.50 (13)C17—C16—H16120.3
O10—C5—H5110.7C15—C16—H16120.3
O1—C5—H5110.7C16—C17—C18120.59 (17)
C4—C5—H5110.7C16—C17—H17119.7
O2—C6—C1105.19 (14)C18—C17—H17119.7
O2—C6—H6A110.7C19—C18—C17119.37 (17)
C1—C6—H6A110.7C19—C18—C21121.21 (18)
O2—C6—H6B110.7C17—C18—C21119.42 (18)
C1—C6—H6B110.7C20—C19—C18120.91 (18)
H6A—C6—H6B108.8C20—C19—H19119.5
O3—C7—O2123.64 (17)C18—C19—H19119.5
O3—C7—C8125.73 (18)C19—C20—C15118.61 (17)
O2—C7—C8110.58 (16)C19—C20—H20120.7
C7—C8—H8A109.5C15—C20—H20120.7
C7—C8—H8B109.5O11—C21—C18124.9 (2)
H8A—C8—H8B109.5O11—C21—H21117.5
C7—C8—H8C109.5C18—C21—H21117.5
H8A—C8—H8C109.5
C5—O1—C1—C6−170.55 (13)C3—C4—C5—O158.77 (17)
C5—O1—C1—C267.38 (15)C7—O2—C6—C1−174.96 (14)
C9—O4—C2—C3140.73 (14)O1—C1—C6—O264.96 (16)
C9—O4—C2—C1−100.26 (16)C2—C1—C6—O2−176.99 (13)
O1—C1—C2—O4−173.01 (13)C6—O2—C7—O3−2.8 (3)
C6—C1—C2—O469.16 (17)C6—O2—C7—C8174.88 (15)
O1—C1—C2—C3−57.40 (16)C2—O4—C9—O59.6 (2)
C6—C1—C2—C3−175.23 (13)C2—O4—C9—C10−168.33 (15)
C11—O6—C3—C2117.13 (16)C3—O6—C11—O72.1 (3)
C11—O6—C3—C4−122.56 (16)C3—O6—C11—C12−176.77 (19)
O4—C2—C3—O6−69.99 (15)C4—O8—C13—O92.9 (3)
C1—C2—C3—O6170.17 (13)C4—O8—C13—C14−178.48 (17)
O4—C2—C3—C4171.65 (13)C5—O10—C15—C16−134.15 (17)
C1—C2—C3—C451.81 (18)C5—O10—C15—C2046.8 (2)
C13—O8—C4—C3−110.11 (16)O10—C15—C16—C17−178.90 (15)
C13—O8—C4—C5131.85 (15)C20—C15—C16—C170.2 (3)
O6—C3—C4—O873.14 (16)C15—C16—C17—C18−0.2 (3)
C2—C3—C4—O8−168.61 (13)C16—C17—C18—C190.2 (3)
O6—C3—C4—C5−169.91 (13)C16—C17—C18—C21−179.67 (17)
C2—C3—C4—C5−51.66 (18)C17—C18—C19—C20−0.2 (3)
C15—O10—C5—O1−89.74 (17)C21—C18—C19—C20179.63 (17)
C15—O10—C5—C4152.99 (14)C18—C19—C20—C150.2 (3)
C1—O1—C5—O10175.14 (12)O10—C15—C20—C19178.82 (15)
C1—O1—C5—C4−68.62 (16)C16—C15—C20—C19−0.2 (3)
O8—C4—C5—O10−65.78 (16)C19—C18—C21—O11−1.9 (3)
C3—C4—C5—O10176.62 (13)C17—C18—C21—O11177.97 (19)
O8—C4—C5—O1176.37 (13)
D—H···AD—HH···AD···AD—H···A
C1—H1···O5i1.002.513.356 (2)143
C3—H3···O5i1.002.353.207 (2)143
C6—H6A···O9ii0.992.403.324 (2)155
C8—H8C···O11iii0.982.543.475 (3)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯O5i1.002.513.356 (2)143
C3—H3⋯O5i1.002.353.207 (2)143
C6—H6A⋯O9ii0.992.403.324 (2)155
C8—H8C⋯O11iii0.982.543.475 (3)160

Symmetry codes: (i) ; (ii) ; (iii) .

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4.  Synthesis and evaluation of 5-benzylidene(thio)barbiturate-beta-D-glycosides as mushroom tyrosinase inhibitors.

Authors:  Qin Yan; Rihui Cao; Wei Yi; Liang Yu; Zhiyong Chen; Lin Ma; Huacan Song
Journal:  Bioorg Med Chem Lett       Date:  2009-06-13       Impact factor: 2.823

5.  4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-galactopyran-oside.

Authors:  Rusnah Syahila Duali Hussen; Thorsten Heidelberg; Nasrul Zamani Mohd Rodzi; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09

6.  4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-allopyran-oside.

Authors:  Ding Ye; Kuan Zhang; Hua-Feng Chen; Shu-Fan Yin; Ying Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20
  6 in total
  1 in total

1.  4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-galactopyran-oside.

Authors:  Rusnah Syahila Duali Hussen; Thorsten Heidelberg; Nasrul Zamani Mohd Rodzi; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09
  1 in total

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