Literature DB >> 21754110

4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-galactopyran-oside.

Rusnah Syahila Duali Hussen1, Thorsten Heidelberg, Nasrul Zamani Mohd Rodzi, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The galactose ring in the title compound, C(21)H(24)O(11), has a chair conformation with the substituted benzene ring occupying an equatorial position. The crystal packing features C-H⋯O inter-actions that lead to the formation of supra-molecular layers in the ab plane.

Entities:  

Year:  2011        PMID: 21754110      PMCID: PMC3099913          DOI: 10.1107/S1600536811008257

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Benassi et al. (2007 ▶); Patil et al. (2008 ▶). For the biological activity of related structures, see: Zheng et al. (2010 ▶). For the structure of the isomeric allopyran­oside and glucopyran­oside derivatives, see: Ye et al. (2009 ▶); Heidelberg et al. (2011 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H24O11 M = 452.40 Monoclinic, a = 11.8358 (4) Å b = 5.6664 (2) Å c = 17.5079 (6) Å β = 109.616 (4)° V = 1106.05 (7) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.25 × 0.20 × 0.05 mm

Data collection

Agilent Supernova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.596, T max = 1.000 10396 measured reflections 2768 independent reflections 2535 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.086 S = 1.05 2768 reflections 293 parameters 1 restraint H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811008257/ez2236sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008257/ez2236Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24O11F(000) = 476
Mr = 452.40Dx = 1.358 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 5487 reflections
a = 11.8358 (4) Åθ = 2.5–29.3°
b = 5.6664 (2) ŵ = 0.11 mm1
c = 17.5079 (6) ÅT = 100 K
β = 109.616 (4)°Prism, colourless
V = 1106.05 (7) Å30.25 × 0.20 × 0.05 mm
Z = 2
Agilent Supernova Dual diffractometer with an Atlas detector2768 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2535 reflections with I > 2σ(I)
MirrorRint = 0.051
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.5°
ω scansh = −15→15
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −7→6
Tmin = 0.596, Tmax = 1.000l = −22→16
10396 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0424P)2 + 0.1621P] where P = (Fo2 + 2Fc2)/3
2768 reflections(Δ/σ)max < 0.001
293 parametersΔρmax = 0.21 e Å3
1 restraintΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.52081 (12)0.4982 (3)0.29215 (8)0.0188 (3)
O20.48738 (13)0.0896 (3)0.37091 (9)0.0240 (4)
O30.55891 (13)−0.1643 (3)0.47497 (9)0.0243 (4)
O40.75837 (12)0.6298 (3)0.39447 (8)0.0184 (3)
O50.86847 (14)0.3841 (3)0.49186 (9)0.0283 (4)
O60.83224 (12)0.7065 (3)0.26663 (8)0.0202 (3)
O70.95682 (14)0.3988 (3)0.27801 (9)0.0271 (4)
O80.61785 (14)0.7131 (3)0.12877 (9)0.0202 (3)
O90.61716 (16)1.1080 (3)0.13951 (10)0.0304 (4)
O100.41232 (13)0.7100 (3)0.18039 (8)0.0213 (3)
O11−0.15194 (15)0.5245 (5)0.06218 (12)0.0490 (6)
C10.61385 (17)0.3269 (4)0.32349 (12)0.0180 (4)
H10.60160.19900.28210.022*
C20.73547 (18)0.4392 (4)0.33610 (12)0.0178 (4)
H20.80010.31740.35490.021*
C30.73421 (17)0.5437 (4)0.25518 (12)0.0177 (4)
H30.74210.41240.21910.021*
C40.62145 (17)0.6840 (4)0.21135 (11)0.0177 (4)
H40.62530.84200.23760.021*
C50.50894 (18)0.5541 (4)0.21107 (12)0.0182 (4)
H50.49660.40810.17720.022*
C60.59907 (18)0.2203 (4)0.39814 (12)0.0216 (5)
H6A0.66700.11380.42530.026*
H6B0.59580.34540.43680.026*
C70.47923 (18)−0.0968 (4)0.41586 (12)0.0205 (4)
C80.35738 (19)−0.2058 (5)0.38251 (13)0.0272 (5)
H8A0.3622−0.37310.39740.041*
H8B0.3277−0.19090.32330.041*
H8C0.3024−0.12470.40490.041*
C90.83088 (18)0.5785 (4)0.47134 (12)0.0195 (4)
C100.8534 (2)0.7915 (4)0.52407 (13)0.0246 (5)
H10A0.91520.75590.57620.037*
H10B0.77910.83750.53320.037*
H10C0.88070.92120.49760.037*
C110.94103 (19)0.6087 (5)0.27887 (12)0.0221 (5)
C121.0356 (2)0.7935 (5)0.29539 (14)0.0301 (6)
H12A1.09880.74130.27460.045*
H12B1.07010.82020.35400.045*
H12C1.00030.94070.26840.045*
C130.61949 (19)0.9346 (4)0.10083 (13)0.0208 (5)
C140.6223 (2)0.9316 (5)0.01601 (13)0.0284 (5)
H14A0.64971.08520.00340.043*
H14B0.54160.8993−0.02190.043*
H14C0.67740.80810.01110.043*
C150.29775 (18)0.6182 (5)0.16131 (12)0.0214 (5)
C160.2083 (2)0.7649 (5)0.11247 (13)0.0269 (5)
H160.22810.91100.09350.032*
C170.0891 (2)0.6936 (5)0.09193 (14)0.0310 (6)
H170.02710.79240.05880.037*
C180.0601 (2)0.4804 (5)0.11914 (13)0.0282 (5)
C190.1514 (2)0.3361 (5)0.16730 (13)0.0275 (5)
H190.13170.18890.18560.033*
C200.27087 (19)0.4037 (4)0.18905 (13)0.0246 (5)
H200.33280.30500.22220.030*
C21−0.0667 (2)0.4052 (6)0.09904 (14)0.0369 (6)
H21−0.08160.25300.11630.044*
U11U22U33U12U13U23
O10.0204 (7)0.0207 (8)0.0147 (7)0.0044 (6)0.0053 (6)0.0017 (6)
O20.0208 (7)0.0267 (9)0.0219 (7)−0.0005 (7)0.0037 (6)0.0064 (7)
O30.0241 (7)0.0252 (9)0.0233 (7)−0.0009 (7)0.0075 (6)0.0057 (7)
O40.0216 (7)0.0151 (7)0.0159 (6)0.0016 (6)0.0025 (6)−0.0009 (6)
O50.0353 (9)0.0198 (9)0.0226 (7)0.0033 (7)0.0000 (7)0.0025 (7)
O60.0205 (7)0.0175 (8)0.0231 (7)−0.0019 (6)0.0081 (6)−0.0008 (6)
O70.0248 (8)0.0258 (10)0.0309 (8)0.0023 (7)0.0095 (7)0.0016 (8)
O80.0305 (8)0.0153 (8)0.0149 (7)0.0001 (7)0.0078 (6)−0.0004 (6)
O90.0498 (10)0.0161 (8)0.0268 (8)−0.0001 (8)0.0148 (8)0.0009 (8)
O100.0211 (7)0.0181 (8)0.0220 (7)0.0049 (6)0.0035 (6)0.0020 (7)
O110.0240 (9)0.0789 (17)0.0400 (11)0.0101 (10)0.0052 (8)−0.0055 (11)
C10.0201 (9)0.0133 (10)0.0193 (9)0.0013 (9)0.0048 (8)0.0014 (8)
C20.0214 (10)0.0131 (11)0.0181 (9)0.0008 (8)0.0054 (8)−0.0015 (8)
C30.0189 (10)0.0142 (11)0.0200 (10)−0.0020 (8)0.0064 (8)−0.0014 (8)
C40.0238 (10)0.0151 (11)0.0144 (9)0.0020 (9)0.0065 (8)0.0005 (8)
C50.0218 (10)0.0146 (11)0.0168 (9)0.0034 (8)0.0048 (8)0.0008 (8)
C60.0197 (10)0.0224 (12)0.0204 (10)−0.0029 (9)0.0039 (8)0.0039 (9)
C70.0219 (10)0.0206 (11)0.0217 (10)−0.0018 (9)0.0107 (9)−0.0013 (9)
C80.0241 (11)0.0309 (14)0.0266 (11)−0.0053 (10)0.0087 (9)0.0010 (11)
C90.0172 (9)0.0210 (12)0.0180 (9)−0.0019 (9)0.0027 (8)0.0022 (9)
C100.0272 (11)0.0224 (12)0.0200 (10)0.0011 (10)0.0024 (9)−0.0004 (10)
C110.0230 (10)0.0270 (13)0.0167 (9)−0.0005 (10)0.0072 (8)−0.0005 (10)
C120.0255 (11)0.0358 (15)0.0290 (11)−0.0071 (11)0.0092 (10)−0.0055 (11)
C130.0214 (10)0.0174 (12)0.0222 (10)0.0005 (9)0.0056 (9)0.0034 (9)
C140.0380 (12)0.0267 (14)0.0215 (10)0.0039 (11)0.0113 (10)0.0041 (10)
C150.0213 (10)0.0248 (12)0.0170 (9)0.0027 (9)0.0050 (8)−0.0051 (9)
C160.0297 (12)0.0280 (13)0.0216 (10)0.0069 (10)0.0067 (10)0.0003 (10)
C170.0243 (11)0.0433 (16)0.0222 (10)0.0113 (11)0.0036 (9)−0.0008 (11)
C180.0252 (11)0.0389 (15)0.0201 (10)0.0029 (11)0.0070 (9)−0.0085 (11)
C190.0269 (11)0.0276 (13)0.0279 (11)−0.0027 (10)0.0091 (10)−0.0070 (10)
C200.0227 (10)0.0235 (12)0.0250 (10)0.0036 (10)0.0046 (9)−0.0003 (10)
C210.0257 (12)0.0567 (19)0.0284 (12)0.0004 (13)0.0092 (10)−0.0121 (13)
O1—C51.415 (2)C7—C81.496 (3)
O1—C11.432 (2)C8—H8A0.9800
O2—C71.340 (3)C8—H8B0.9800
O2—C61.449 (3)C8—H8C0.9800
O3—C71.205 (3)C9—C101.488 (3)
O4—C91.362 (2)C10—H10A0.9800
O4—C21.448 (2)C10—H10B0.9800
O5—C91.197 (3)C10—H10C0.9800
O6—C111.351 (3)C11—C121.489 (3)
O6—C31.443 (2)C12—H12A0.9800
O7—C111.205 (3)C12—H12B0.9800
O8—C131.350 (3)C12—H12C0.9800
O8—C41.441 (2)C13—C141.497 (3)
O9—C131.199 (3)C14—H14A0.9800
O10—C151.384 (3)C14—H14B0.9800
O10—C51.401 (2)C14—H14C0.9800
O11—C211.206 (3)C15—C201.385 (3)
C1—C61.502 (3)C15—C161.391 (3)
C1—C21.521 (3)C16—C171.393 (3)
C1—H11.0000C16—H160.9500
C2—C31.531 (3)C17—C181.384 (4)
C2—H21.0000C17—H170.9500
C3—C41.521 (3)C18—C191.391 (3)
C3—H31.0000C18—C211.484 (3)
C4—C51.520 (3)C19—C201.389 (3)
C4—H41.0000C19—H190.9500
C5—H51.0000C20—H200.9500
C6—H6A0.9900C21—H210.9500
C6—H6B0.9900
C5—O1—C1109.93 (14)H8B—C8—H8C109.5
C7—O2—C6116.57 (16)O5—C9—O4122.7 (2)
C9—O4—C2116.39 (17)O5—C9—C10126.07 (19)
C11—O6—C3116.03 (17)O4—C9—C10111.22 (19)
C13—O8—C4118.07 (17)C9—C10—H10A109.5
C15—O10—C5117.57 (17)C9—C10—H10B109.5
O1—C1—C6107.86 (16)H10A—C10—H10B109.5
O1—C1—C2109.91 (17)C9—C10—H10C109.5
C6—C1—C2115.02 (17)H10A—C10—H10C109.5
O1—C1—H1107.9H10B—C10—H10C109.5
C6—C1—H1107.9O7—C11—O6123.1 (2)
C2—C1—H1107.9O7—C11—C12125.9 (2)
O4—C2—C1111.00 (16)O6—C11—C12110.9 (2)
O4—C2—C3107.82 (17)C11—C12—H12A109.5
C1—C2—C3108.23 (16)C11—C12—H12B109.5
O4—C2—H2109.9H12A—C12—H12B109.5
C1—C2—H2109.9C11—C12—H12C109.5
C3—C2—H2109.9H12A—C12—H12C109.5
O6—C3—C4105.32 (16)H12B—C12—H12C109.5
O6—C3—C2111.18 (16)O9—C13—O8123.49 (19)
C4—C3—C2113.79 (16)O9—C13—C14125.6 (2)
O6—C3—H3108.8O8—C13—C14110.91 (19)
C4—C3—H3108.8C13—C14—H14A109.5
C2—C3—H3108.8C13—C14—H14B109.5
O8—C4—C5108.73 (16)H14A—C14—H14B109.5
O8—C4—C3106.93 (15)C13—C14—H14C109.5
C5—C4—C3111.57 (17)H14A—C14—H14C109.5
O8—C4—H4109.9H14B—C14—H14C109.5
C5—C4—H4109.9O10—C15—C20124.53 (19)
C3—C4—H4109.9O10—C15—C16113.9 (2)
O10—C5—O1108.61 (15)C20—C15—C16121.5 (2)
O10—C5—C4107.29 (17)C15—C16—C17118.7 (2)
O1—C5—C4108.26 (16)C15—C16—H16120.6
O10—C5—H5110.9C17—C16—H16120.6
O1—C5—H5110.9C18—C17—C16120.8 (2)
C4—C5—H5110.9C18—C17—H17119.6
O2—C6—C1106.20 (16)C16—C17—H17119.6
O2—C6—H6A110.5C17—C18—C19119.3 (2)
C1—C6—H6A110.5C17—C18—C21121.1 (2)
O2—C6—H6B110.5C19—C18—C21119.5 (3)
C1—C6—H6B110.5C20—C19—C18121.1 (2)
H6A—C6—H6B108.7C20—C19—H19119.5
O3—C7—O2124.39 (19)C18—C19—H19119.5
O3—C7—C8125.4 (2)C15—C20—C19118.6 (2)
O2—C7—C8110.25 (18)C15—C20—H20120.7
C7—C8—H8A109.5C19—C20—H20120.7
C7—C8—H8B109.5O11—C21—C18124.3 (3)
H8A—C8—H8B109.5O11—C21—H21117.8
C7—C8—H8C109.5C18—C21—H21117.8
H8A—C8—H8C109.5
C5—O1—C1—C6−163.31 (17)C3—C4—C5—O154.5 (2)
C5—O1—C1—C270.6 (2)C7—O2—C6—C1151.59 (18)
C9—O4—C2—C1100.1 (2)O1—C1—C6—O266.5 (2)
C9—O4—C2—C3−141.53 (17)C2—C1—C6—O2−170.44 (17)
O1—C1—C2—O461.5 (2)C6—O2—C7—O3−2.2 (3)
C6—C1—C2—O4−60.5 (2)C6—O2—C7—C8177.27 (18)
O1—C1—C2—C3−56.7 (2)C2—O4—C9—O5−4.5 (3)
C6—C1—C2—C3−178.60 (18)C2—O4—C9—C10176.56 (17)
C11—O6—C3—C4−158.49 (16)C3—O6—C11—O72.3 (3)
C11—O6—C3—C277.8 (2)C3—O6—C11—C12−176.14 (16)
O4—C2—C3—O644.2 (2)C4—O8—C13—O9−4.2 (3)
C1—C2—C3—O6164.33 (16)C4—O8—C13—C14176.78 (17)
O4—C2—C3—C4−74.5 (2)C5—O10—C15—C2017.7 (3)
C1—C2—C3—C445.6 (2)C5—O10—C15—C16−164.09 (18)
C13—O8—C4—C5120.0 (2)O10—C15—C16—C17−177.76 (19)
C13—O8—C4—C3−119.44 (19)C20—C15—C16—C170.5 (3)
O6—C3—C4—O873.70 (19)C15—C16—C17—C18−0.3 (3)
C2—C3—C4—O8−164.29 (17)C16—C17—C18—C19−0.2 (3)
O6—C3—C4—C5−167.54 (16)C16—C17—C18—C21178.7 (2)
C2—C3—C4—C5−45.5 (2)C17—C18—C19—C200.6 (3)
C15—O10—C5—O1−74.1 (2)C21—C18—C19—C20−178.3 (2)
C15—O10—C5—C4169.11 (16)O10—C15—C20—C19177.9 (2)
C1—O1—C5—O10176.18 (16)C16—C15—C20—C19−0.2 (3)
C1—O1—C5—C4−67.6 (2)C18—C19—C20—C15−0.4 (3)
O8—C4—C5—O10−70.80 (19)C17—C18—C21—O11−3.8 (4)
C3—C4—C5—O10171.51 (15)C19—C18—C21—O11175.1 (2)
O8—C4—C5—O1172.16 (16)
D—H···AD—HH···AD···AD—H···A
C3—H3···O9i1.002.393.199 (3)137
C5—H5···O9i1.002.453.268 (3)139
C10—H10b···O3ii0.982.463.307 (3)145
C12—H12b···O5iii0.982.573.548 (3)172
C14—H14c···O11iv0.982.503.415 (4)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O9i1.002.393.199 (3)137
C5—H5⋯O9i1.002.453.268 (3)139
C10—H10b⋯O3ii0.982.463.307 (3)145
C12—H12b⋯O5iii0.982.573.548 (3)172
C14—H14c⋯O11iv0.982.503.415 (4)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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4.  4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-glucopyran-oside.

Authors:  Thorsten Heidelberg; Rusnah Syahila Duali Hussen; Nasrul Zamani Mohd Rodzi; Seik Weng Ng; Edward R T Tiekink
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  4 in total
  1 in total

1.  4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-glucopyran-oside.

Authors:  Thorsten Heidelberg; Rusnah Syahila Duali Hussen; Nasrul Zamani Mohd Rodzi; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09
  1 in total

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