Literature DB >> 21583708

(E)-4-(β-d-Allopyran-os-yloxy)cinnamyl 4-bromo-phenyl ketone ethanol solvate.

Xiu-Juan Yin1, Xue Bai, Lei Zheng, Ying Li, Shu-Fan Yin.   

Abstract

The title compound, C(21)H(21)BrO(7)·C(2)H(6)O, was synthesized by the Claisen-Schimidt reaction of helicid (systematic name: 4-formyl-phenyl-β-d-allopyran-oside) with 4-bromo-aceto-phenone in ethanol. The pyran ring adopts a chair conformation. In the crystal structure, mol-ecules are linked into a three-dimensional network by inter-molecular O-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583708      PMCID: PMC2977370          DOI: 10.1107/S1600536809029687

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For helicid and its biological activity, see: Chen et al. (1981 ▶); Sha & Mao (1987 ▶). For the synthesis and structure of related compound, see: Fan et al. (2007 ▶); Fu et al. (2009 ▶); Lv et al. (2009 ▶); Yang et al. (2009 ▶); Ye et al. (2009 ▶).

Experimental

Crystal data

C21H21BrO7·C2H6O M = 511.36 Monoclinic, a = 10.977 (2) Å b = 7.6518 (15) Å c = 13.259 (3) Å β = 92.08 (3)° V = 1113.0 (4) Å3 Z = 2 Mo Kα radiation μ = 1.89 mm−1 T = 113 K 0.20 × 0.16 × 0.12 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.703, T max = 0.805 9199 measured reflections 5171 independent reflections 3636 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.056 S = 0.75 5171 reflections 296 parameters 1 restraint H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −0.39 e Å−3 Absolute structure: Flack (1983 ▶), 2358 Friedel pairs Flack parameter: 0.027 (6) Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029687/rz2355sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029687/rz2355Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21BrO7·C2H6OF(000) = 528
Mr = 511.36Dx = 1.526 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3521 reflections
a = 10.977 (2) Åθ = 1.5–27.9°
b = 7.6518 (15) ŵ = 1.89 mm1
c = 13.259 (3) ÅT = 113 K
β = 92.08 (3)°Block, colourless
V = 1113.0 (4) Å30.20 × 0.16 × 0.12 mm
Z = 2
Rigaku Saturn CCD area-detector diffractometer5171 independent reflections
Radiation source: rotating anode3636 reflections with I > 2σ(I)
confocalRint = 0.039
Detector resolution: 7.31 pixels mm-1θmax = 27.9°, θmin = 1.5°
ω and φ scansh = −14→14
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −10→10
Tmin = 0.703, Tmax = 0.805l = −13→17
9199 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.032w = 1/[σ2(Fo2)] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.056(Δ/σ)max = 0.003
S = 0.75Δρmax = 0.67 e Å3
5171 reflectionsΔρmin = −0.39 e Å3
296 parametersExtinction correction: SHELXL97 (Sheldrick, 2008)
1 restraintExtinction coefficient: 0.0242 (11)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 2358 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.027 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.70240 (2)0.31136 (4)0.80385 (2)0.02313 (10)
O10.15927 (15)0.3593 (2)−0.22799 (13)0.0125 (5)
O20.08102 (18)0.0860 (3)−0.35522 (15)0.0166 (5)
H20.05530.0678−0.41470.025*
O3−0.04022 (16)0.4996 (3)−0.44247 (14)0.0162 (5)
H3−0.07880.5823−0.41690.024*
O40.05197 (19)0.7491 (2)−0.30705 (18)0.0153 (5)
H40.06910.8554−0.31360.023*
O50.32128 (15)0.7681 (2)−0.28189 (15)0.0164 (5)
H50.27770.8430−0.25410.025*
O60.32452 (16)0.4805 (3)−0.14705 (14)0.0143 (5)
O70.23659 (17)0.2120 (3)0.45816 (14)0.0192 (5)
C1−0.0025 (3)0.1941 (4)−0.3055 (2)0.0168 (8)
H1A−0.02090.1412−0.23960.020*
H1B−0.07960.2006−0.34640.020*
C20.0466 (2)0.3767 (4)−0.2884 (2)0.0122 (7)
H2A−0.01340.4455−0.24960.015*
C30.0726 (3)0.4741 (4)−0.3866 (2)0.0108 (7)
H3A0.12790.4012−0.42760.013*
C40.1343 (3)0.6463 (4)−0.3622 (2)0.0142 (7)
H4A0.15320.7077−0.42640.017*
C50.2521 (2)0.6144 (4)−0.3006 (2)0.0127 (7)
H5A0.30330.5322−0.33960.015*
C60.2173 (2)0.5219 (4)−0.2039 (2)0.0126 (7)
H60.16270.5976−0.16390.015*
C70.3110 (3)0.4342 (4)−0.0469 (2)0.0135 (7)
C80.1998 (2)0.4166 (4)−0.0018 (2)0.0145 (7)
H80.12580.4363−0.03940.017*
C90.1983 (2)0.3697 (4)0.0992 (2)0.0156 (7)
H90.12210.35840.13030.019*
C100.3045 (2)0.3390 (4)0.1562 (2)0.0136 (7)
C110.4158 (2)0.3544 (4)0.1087 (2)0.0190 (8)
H110.48990.33160.14570.023*
C120.4188 (2)0.4030 (4)0.0076 (2)0.0178 (7)
H120.49470.4147−0.02400.021*
C130.2936 (2)0.2962 (5)0.26334 (19)0.0167 (7)
H130.21270.28240.28510.020*
C140.3805 (2)0.2741 (4)0.3339 (2)0.0141 (7)
H140.46400.27960.31770.017*
C150.3446 (3)0.2406 (4)0.4391 (2)0.0142 (7)
C160.4376 (2)0.2468 (4)0.5234 (2)0.0116 (7)
C170.4006 (3)0.2023 (4)0.6211 (2)0.0146 (7)
H170.31990.16180.63020.017*
C180.4800 (2)0.2172 (4)0.7029 (2)0.0152 (7)
H180.45470.18720.76840.018*
C190.5973 (2)0.2762 (4)0.6893 (2)0.0150 (8)
C200.6379 (2)0.3148 (5)0.59468 (18)0.0139 (6)
H200.71940.35250.58640.017*
C210.5579 (2)0.2977 (5)0.51141 (18)0.0137 (6)
H210.58570.32110.44570.016*
O80.7446 (2)0.5264 (3)0.15901 (15)0.0236 (5)
H8A0.77020.62930.16610.035*
C220.7527 (2)0.4749 (4)0.0559 (2)0.0186 (7)
H22A0.71390.56520.01200.022*
H22B0.70760.36420.04480.022*
C230.8844 (2)0.4500 (4)0.0265 (2)0.0283 (9)
H23A0.92810.56120.03340.042*
H23B0.88620.4100−0.04370.042*
H23C0.92370.36260.07080.042*
U11U22U33U12U13U23
Br10.02318 (17)0.03083 (19)0.01506 (14)−0.0005 (2)−0.00380 (11)−0.0020 (2)
O10.0135 (10)0.0100 (12)0.0137 (10)−0.0031 (9)−0.0042 (8)0.0028 (8)
O20.0266 (13)0.0125 (13)0.0105 (12)0.0026 (11)−0.0005 (10)−0.0007 (10)
O30.0193 (12)0.0162 (12)0.0128 (12)0.0055 (10)−0.0041 (9)−0.0025 (10)
O40.0169 (11)0.0075 (11)0.0216 (12)0.0025 (9)0.0040 (9)−0.0012 (9)
O50.0157 (11)0.0123 (14)0.0214 (12)−0.0043 (9)0.0046 (9)−0.0034 (9)
O60.0117 (11)0.0202 (13)0.0108 (11)−0.0012 (9)−0.0022 (9)0.0021 (10)
O70.0108 (11)0.0321 (14)0.0148 (12)−0.0053 (10)0.0011 (9)−0.0017 (10)
C10.020 (2)0.0157 (18)0.0144 (17)0.0003 (15)0.0014 (15)0.0018 (15)
C20.0133 (17)0.0116 (16)0.0118 (16)−0.0002 (13)−0.0007 (13)0.0000 (13)
C30.0106 (16)0.0127 (17)0.0091 (17)0.0015 (14)−0.0009 (13)0.0010 (14)
C40.0166 (18)0.0129 (17)0.0135 (17)0.0049 (14)0.0071 (14)0.0010 (14)
C50.0142 (16)0.0104 (17)0.0135 (16)−0.0022 (13)0.0021 (13)−0.0012 (13)
C60.0142 (17)0.0122 (16)0.0113 (16)0.0019 (14)−0.0012 (13)−0.0049 (14)
C70.0124 (16)0.0186 (18)0.0096 (16)−0.0005 (14)0.0014 (13)−0.0024 (14)
C80.0102 (16)0.0181 (18)0.0148 (17)0.0019 (14)−0.0060 (13)−0.0002 (14)
C90.0111 (15)0.0218 (18)0.0139 (16)0.0004 (13)0.0028 (12)−0.0018 (13)
C100.0123 (14)0.014 (2)0.0145 (14)−0.0020 (15)−0.0004 (11)−0.0002 (14)
C110.0130 (15)0.029 (2)0.0148 (15)−0.0016 (14)−0.0026 (12)0.0016 (14)
C120.0090 (16)0.0261 (19)0.0185 (17)−0.0015 (14)0.0011 (13)−0.0065 (14)
C130.0176 (15)0.0177 (17)0.0152 (14)−0.0017 (19)0.0037 (11)−0.0018 (18)
C140.0130 (15)0.014 (2)0.0159 (15)−0.0009 (14)0.0032 (12)0.0025 (14)
C150.0182 (17)0.0133 (16)0.0111 (16)0.0031 (13)−0.0010 (13)−0.0029 (13)
C160.0161 (16)0.0104 (15)0.0084 (15)0.0018 (13)0.0003 (12)−0.0021 (12)
C170.0119 (16)0.0166 (18)0.0155 (17)0.0010 (13)0.0045 (13)0.0006 (14)
C180.0198 (18)0.0188 (18)0.0072 (15)0.0014 (14)0.0009 (13)0.0029 (13)
C190.0176 (15)0.013 (2)0.0136 (14)0.0049 (14)−0.0041 (12)−0.0014 (14)
C200.0106 (13)0.0156 (14)0.0156 (13)−0.004 (2)−0.0002 (10)0.002 (2)
C210.0144 (14)0.0167 (16)0.0103 (13)−0.0015 (19)0.0045 (10)0.0022 (18)
O80.0384 (14)0.0154 (13)0.0172 (13)−0.0044 (11)0.0052 (11)−0.0017 (11)
C220.0192 (18)0.0199 (19)0.0164 (18)0.0015 (15)−0.0031 (14)−0.0034 (15)
C230.0161 (18)0.037 (2)0.031 (2)0.0019 (16)−0.0027 (15)−0.0014 (18)
Br1—C191.893 (3)C9—C101.385 (3)
O1—C61.429 (3)C9—H90.9500
O1—C21.456 (3)C10—C111.400 (3)
O2—C11.415 (3)C10—C131.468 (3)
O2—H20.8400C11—C121.394 (4)
O3—C31.433 (3)C11—H110.9500
O3—H30.8400C12—H120.9500
O4—C41.421 (3)C13—C141.323 (3)
O4—H40.8400C13—H130.9500
O5—C51.417 (3)C14—C151.485 (4)
O5—H50.8400C14—H140.9500
O6—C71.387 (3)C15—C161.487 (3)
O6—C61.411 (3)C16—C211.391 (3)
O7—C151.241 (3)C16—C171.413 (4)
C1—C21.511 (4)C17—C181.371 (4)
C1—H1A0.9900C17—H170.9500
C1—H1B0.9900C18—C191.382 (3)
C2—C31.535 (4)C18—H180.9500
C2—H2A1.0000C19—C201.378 (3)
C3—C41.511 (4)C20—C211.392 (3)
C3—H3A1.0000C20—H200.9500
C4—C51.524 (4)C21—H210.9500
C4—H4A1.0000O8—C221.429 (3)
C5—C61.526 (3)O8—H8A0.8400
C5—H5A1.0000C22—C231.523 (4)
C6—H61.0000C22—H22A0.9900
C7—C121.384 (4)C22—H22B0.9900
C7—C81.385 (4)C23—H23A0.9800
C8—C91.387 (4)C23—H23B0.9800
C8—H80.9500C23—H23C0.9800
C6—O1—C2114.0 (2)C8—C9—H9119.0
C1—O2—H2109.5C9—C10—C11118.2 (3)
C3—O3—H3109.5C9—C10—C13118.0 (2)
C4—O4—H4109.5C11—C10—C13123.8 (2)
C5—O5—H5109.5C12—C11—C10120.4 (3)
C7—O6—C6116.9 (2)C12—C11—H11119.8
O2—C1—C2112.1 (2)C10—C11—H11119.8
O2—C1—H1A109.2C7—C12—C11120.0 (3)
C2—C1—H1A109.2C7—C12—H12120.0
O2—C1—H1B109.2C11—C12—H12120.0
C2—C1—H1B109.2C14—C13—C10129.2 (2)
H1A—C1—H1B107.9C14—C13—H13115.4
O1—C2—C1106.8 (2)C10—C13—H13115.4
O1—C2—C3109.3 (2)C13—C14—C15118.5 (2)
C1—C2—C3113.5 (3)C13—C14—H14120.8
O1—C2—H2A109.0C15—C14—H14120.8
C1—C2—H2A109.0O7—C15—C14120.6 (2)
C3—C2—H2A109.0O7—C15—C16119.2 (3)
O3—C3—C4111.4 (2)C14—C15—C16120.2 (2)
O3—C3—C2108.7 (2)C21—C16—C17118.6 (2)
C4—C3—C2109.8 (2)C21—C16—C15123.4 (2)
O3—C3—H3A109.0C17—C16—C15118.0 (2)
C4—C3—H3A109.0C18—C17—C16120.6 (3)
C2—C3—H3A109.0C18—C17—H17119.7
O4—C4—C3107.7 (2)C16—C17—H17119.7
O4—C4—C5110.8 (2)C17—C18—C19119.5 (3)
C3—C4—C5109.9 (2)C17—C18—H18120.2
O4—C4—H4A109.5C19—C18—H18120.2
C3—C4—H4A109.5C20—C19—C18121.5 (2)
C5—C4—H4A109.5C20—C19—Br1119.5 (2)
O5—C5—C4113.6 (2)C18—C19—Br1119.0 (2)
O5—C5—C6112.8 (2)C19—C20—C21119.1 (2)
C4—C5—C6106.9 (2)C19—C20—H20120.4
O5—C5—H5A107.8C21—C20—H20120.4
C4—C5—H5A107.8C16—C21—C20120.6 (2)
C6—C5—H5A107.8C16—C21—H21119.7
O6—C6—O1106.3 (2)C20—C21—H21119.7
O6—C6—C5108.9 (2)C22—O8—H8A109.5
O1—C6—C5109.8 (2)O8—C22—C23111.9 (2)
O6—C6—H6110.6O8—C22—H22A109.2
O1—C6—H6110.6C23—C22—H22A109.2
C5—C6—H6110.6O8—C22—H22B109.2
C12—C7—C8120.5 (3)C23—C22—H22B109.2
C12—C7—O6115.1 (2)H22A—C22—H22B107.9
C8—C7—O6124.4 (3)C22—C23—H23A109.5
C7—C8—C9118.9 (3)C22—C23—H23B109.5
C7—C8—H8120.5H23A—C23—H23B109.5
C9—C8—H8120.5C22—C23—H23C109.5
C10—C9—C8122.1 (3)H23A—C23—H23C109.5
C10—C9—H9119.0H23B—C23—H23C109.5
C6—O1—C2—C1−179.3 (2)C7—C8—C9—C10−0.4 (5)
C6—O1—C2—C357.5 (3)C8—C9—C10—C11−0.7 (5)
O2—C1—C2—O1−59.0 (3)C8—C9—C10—C13177.9 (3)
O2—C1—C2—C361.6 (3)C9—C10—C11—C121.3 (5)
O1—C2—C3—O3−176.5 (2)C13—C10—C11—C12−177.2 (3)
C1—C2—C3—O364.4 (3)C8—C7—C12—C11−0.3 (4)
O1—C2—C3—C4−54.5 (3)O6—C7—C12—C11−179.5 (3)
C1—C2—C3—C4−173.6 (2)C10—C11—C12—C7−0.8 (5)
O3—C3—C4—O457.7 (3)C9—C10—C13—C14−174.7 (4)
C2—C3—C4—O4−62.7 (3)C11—C10—C13—C143.8 (6)
O3—C3—C4—C5178.6 (2)C10—C13—C14—C15176.7 (3)
C2—C3—C4—C558.1 (3)C13—C14—C15—O79.0 (4)
O4—C4—C5—O5−66.2 (3)C13—C14—C15—C16−169.0 (3)
C3—C4—C5—O5174.9 (2)O7—C15—C16—C21−172.2 (3)
O4—C4—C5—C658.8 (3)C14—C15—C16—C215.7 (4)
C3—C4—C5—C6−60.1 (3)O7—C15—C16—C176.2 (4)
C7—O6—C6—O1−76.7 (3)C14—C15—C16—C17−175.8 (3)
C7—O6—C6—C5165.1 (2)C21—C16—C17—C183.1 (4)
C2—O1—C6—O6−179.19 (19)C15—C16—C17—C18−175.5 (3)
C2—O1—C6—C5−61.5 (3)C16—C17—C18—C190.0 (4)
O5—C5—C6—O6−57.9 (3)C17—C18—C19—C20−2.3 (5)
C4—C5—C6—O6176.6 (2)C17—C18—C19—Br1175.7 (2)
O5—C5—C6—O1−173.9 (2)C18—C19—C20—C211.5 (5)
C4—C5—C6—O160.6 (3)Br1—C19—C20—C21−176.5 (3)
C6—O6—C7—C12−176.9 (3)C17—C16—C21—C20−3.9 (5)
C6—O6—C7—C83.9 (4)C15—C16—C21—C20174.6 (3)
C12—C7—C8—C90.9 (4)C19—C20—C21—C161.6 (6)
O6—C7—C8—C9−179.9 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.841.972.783 (3)164
O3—H3···O7ii0.842.052.702 (3)134
O3—H3···O40.842.382.786 (3)110
O4—H4···O2iii0.841.852.677 (3)166
O5—H5···O8iv0.841.912.678 (3)152
O8—H8A···O1iv0.842.082.893 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.841.972.783 (3)164
O3—H3⋯O7ii0.842.052.702 (3)134
O3—H3⋯O40.842.382.786 (3)110
O4—H4⋯O2iii0.841.852.677 (3)166
O5—H5⋯O8iv0.841.912.678 (3)152
O8—H8A⋯O1iv0.842.082.893 (3)163

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-[4-(2,3,4,6-Tetra-O-acetyl-β-d-allo-pyranos-yloxy)benzyl-idene]thio-semi-carbazide.

Authors:  Li Fu; Xiu-Juan Yin; Lei Zheng; Ying Li; Shu-Fan Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-06

3.  N-[4-(β-d-Allopyranos-yloxy)benzyl-idene]methyl-amine.

Authors:  Shi-Ming Lv; Lei Zheng; Hui Zhao; Ying Li; Shu-Fan Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-10

4.  4-Formyl-phenyl 2,3,4,6-tetra-O-acetyl-β-d-allopyran-oside.

Authors:  Ding Ye; Kuan Zhang; Hua-Feng Chen; Shu-Fan Yin; Ying Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

5.  E-[4-(β-d-Allopyranos-yloxy)phen-yl]-1-(4-chloro-phen-yl)prop-2-enone ethanol solvate.

Authors:  Cong-Ling Yang; Hua-Ling Luo; Xiu-Juan Yin; Ying Li; Shu-Fan Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.