Literature DB >> 21583165

2-Phenyl-1H-1,3,7,8-tetra-azacyclo-penta-[l]phenanthrene.

Dong-Ming Liu, Xiu-Ying Li, Xiang-Cheng Wang, Chun-Xiang Li, Chun-Bo Liu.   

Abstract

There are two mol-ecules in the asymmetric unit of the title compound, C(19)H(12)N(4), with dihedral angles of 2.41 (10) and 10.53 (12)° between the fused ring system and the pendant phenyl ring. In the crystal, mol-ecules are linked into chains by N-H⋯N hydrogen bonds and aromatic π-π stacking inter-actions [shortest centroid-centroid distance = 3.6176 (16) Å] complete the structure.

Entities:  

Year:  2009        PMID: 21583165      PMCID: PMC2969696          DOI: 10.1107/S1600536809017498

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Steck & Day (1943 ▶); For related structures, see: Che et al. (2008 ▶); Stephenson & Hardie (2006 ▶); Xi (2008 ▶).

Experimental

Crystal data

C19H12N4 M = 296.33 Triclinic, a = 10.016 (2) Å b = 12.210 (2) Å c = 12.415 (3) Å α = 89.90 (3)° β = 78.44 (3)° γ = 77.96 (3)° V = 1453.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 292 K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.975, T max = 0.984 14453 measured reflections 6587 independent reflections 3657 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.156 S = 1.01 6587 reflections 415 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.20 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809017498/hb2971sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017498/hb2971Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H12N4Z = 4
Mr = 296.33F(000) = 616
Triclinic, P1Dx = 1.354 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.016 (2) ÅCell parameters from 3449 reflections
b = 12.210 (2) Åθ = 3.0–27.5°
c = 12.415 (3) ŵ = 0.08 mm1
α = 89.90 (3)°T = 292 K
β = 78.44 (3)°Block, pale yellow
γ = 77.96 (3)°0.30 × 0.25 × 0.20 mm
V = 1453.7 (5) Å3
Rigaku R-AXIS RAPID diffractometer6587 independent reflections
Radiation source: fine-focus sealed tube3657 reflections with I > 2σ(I)
graphiteRint = 0.048
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −12→12
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −15→15
Tmin = 0.975, Tmax = 0.984l = −16→16
14453 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0719P)2 + 0.0624P] where P = (Fo2 + 2Fc2)/3
6587 reflections(Δ/σ)max < 0.001
415 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.0622 (2)0.23344 (19)0.81330 (18)0.0490 (6)
H1−0.12210.28010.86970.059*
C2−0.0895 (2)0.12895 (19)0.79496 (18)0.0484 (6)
H2−0.16580.10680.83800.058*
C3−0.0027 (2)0.05936 (18)0.71295 (17)0.0450 (5)
H3A−0.0182−0.01150.70010.054*
C40.1104 (2)0.09578 (17)0.64798 (15)0.0372 (5)
C50.2049 (2)0.03323 (16)0.55681 (16)0.0389 (5)
C60.3066 (2)0.07524 (17)0.48872 (16)0.0399 (5)
C70.3291 (2)0.18394 (18)0.51052 (16)0.0411 (5)
C80.4316 (2)0.2316 (2)0.44514 (19)0.0511 (6)
H80.49160.19180.38430.061*
C90.4418 (3)0.3372 (2)0.4723 (2)0.0620 (7)
H90.50880.37070.43000.074*
C100.3510 (3)0.3944 (2)0.5639 (2)0.0602 (7)
H100.35900.46650.58080.072*
C110.2416 (2)0.24813 (17)0.60234 (16)0.0396 (5)
C120.1303 (2)0.20394 (17)0.67106 (15)0.0376 (5)
C130.3167 (2)−0.08769 (19)0.42188 (16)0.0441 (5)
C140.3576 (2)−0.1902 (2)0.35036 (18)0.0471 (6)
C150.3037 (3)−0.2845 (2)0.3759 (2)0.0621 (7)
H150.2408−0.28520.44190.075*
C160.3416 (3)−0.3775 (2)0.3051 (2)0.0745 (8)
H160.3036−0.44010.32310.089*
C170.4350 (3)−0.3777 (3)0.2086 (3)0.0802 (10)
H170.4613−0.44060.16090.096*
C180.4895 (3)−0.2857 (3)0.1823 (2)0.0781 (9)
H180.5529−0.28610.11630.094*
C190.4521 (3)−0.1917 (2)0.2523 (2)0.0631 (7)
H190.4904−0.12950.23350.076*
C20−0.0061 (2)0.71983 (19)0.57979 (18)0.0495 (6)
H20−0.03840.76050.52330.059*
C21−0.0429 (2)0.61739 (19)0.60084 (18)0.0485 (6)
H21−0.09890.59100.56000.058*
C220.0046 (2)0.55589 (18)0.68273 (17)0.0455 (5)
H22−0.01690.48620.69760.055*
C230.0864 (2)0.59938 (17)0.74404 (16)0.0382 (5)
C240.1393 (2)0.54495 (17)0.83266 (16)0.0379 (5)
C250.2102 (2)0.59356 (18)0.89767 (16)0.0406 (5)
C260.2425 (2)0.70078 (18)0.87370 (16)0.0405 (5)
C270.3175 (2)0.7535 (2)0.93361 (18)0.0510 (6)
H270.34980.71920.99310.061*
C280.3424 (3)0.8564 (2)0.9033 (2)0.0599 (7)
H280.39100.89360.94230.072*
C290.2938 (3)0.9040 (2)0.8131 (2)0.0611 (7)
H290.31190.97370.79310.073*
C300.1977 (2)0.75555 (17)0.78341 (16)0.0404 (5)
C310.1167 (2)0.70490 (17)0.71880 (16)0.0384 (5)
C320.1928 (2)0.43446 (18)0.96433 (16)0.0415 (5)
C330.2076 (2)0.33528 (19)1.03149 (17)0.0447 (5)
C340.1535 (3)0.2436 (2)1.0129 (2)0.0654 (7)
H340.10450.24430.95660.078*
C350.1709 (3)0.1517 (3)1.0762 (2)0.0797 (9)
H350.13320.09081.06270.096*
C360.2433 (3)0.1487 (3)1.1591 (2)0.0751 (8)
H360.25580.08591.20150.090*
C370.2964 (3)0.2383 (3)1.1787 (2)0.0709 (8)
H370.34470.23711.23550.085*
C380.2797 (3)0.3312 (2)1.11548 (19)0.0603 (7)
H380.31740.39181.12970.072*
N10.04442 (19)0.27076 (14)0.75517 (14)0.0444 (5)
N20.2540 (2)0.35239 (16)0.62830 (15)0.0488 (5)
N30.21246 (18)−0.07178 (14)0.51377 (13)0.0429 (4)
H30.1617−0.11840.53950.052*
N40.37586 (19)0.00010 (16)0.40376 (14)0.0461 (5)
N50.0722 (2)0.76364 (15)0.63503 (14)0.0460 (5)
N60.2236 (2)0.85701 (16)0.75407 (15)0.0505 (5)
N70.12911 (18)0.44362 (14)0.87635 (13)0.0403 (4)
H70.08990.39470.85290.048*
N80.24317 (19)0.52409 (15)0.98030 (14)0.0441 (4)
U11U22U33U12U13U23
C10.0537 (14)0.0477 (14)0.0407 (12)−0.0078 (11)−0.0015 (11)−0.0058 (11)
C20.0496 (13)0.0490 (14)0.0437 (12)−0.0115 (11)−0.0017 (11)0.0028 (11)
C30.0518 (13)0.0392 (12)0.0451 (12)−0.0118 (10)−0.0098 (11)0.0036 (10)
C40.0449 (12)0.0340 (11)0.0327 (10)−0.0070 (9)−0.0098 (9)0.0033 (9)
C50.0489 (12)0.0327 (11)0.0346 (11)−0.0057 (10)−0.0103 (10)0.0025 (9)
C60.0452 (12)0.0406 (12)0.0347 (11)−0.0076 (10)−0.0118 (10)0.0055 (9)
C70.0446 (12)0.0435 (13)0.0382 (11)−0.0108 (10)−0.0140 (10)0.0070 (10)
C80.0479 (14)0.0620 (16)0.0468 (13)−0.0183 (12)−0.0106 (11)0.0090 (11)
C90.0588 (16)0.0709 (18)0.0647 (16)−0.0337 (14)−0.0118 (13)0.0143 (14)
C100.0650 (17)0.0540 (16)0.0692 (17)−0.0279 (13)−0.0156 (14)0.0053 (13)
C110.0452 (12)0.0385 (12)0.0385 (11)−0.0092 (10)−0.0162 (10)0.0054 (9)
C120.0446 (12)0.0364 (11)0.0328 (10)−0.0066 (9)−0.0121 (9)0.0031 (9)
C130.0481 (13)0.0463 (13)0.0351 (11)−0.0030 (11)−0.0094 (10)0.0002 (10)
C140.0477 (13)0.0498 (14)0.0415 (12)−0.0009 (11)−0.0139 (10)−0.0055 (11)
C150.0723 (17)0.0529 (16)0.0540 (15)−0.0022 (13)−0.0077 (13)−0.0143 (13)
C160.086 (2)0.0588 (18)0.0757 (19)−0.0058 (15)−0.0186 (17)−0.0197 (15)
C170.0701 (19)0.081 (2)0.082 (2)0.0056 (17)−0.0209 (17)−0.0417 (18)
C180.0578 (17)0.103 (3)0.0629 (17)−0.0055 (17)0.0007 (14)−0.0354 (18)
C190.0541 (15)0.0762 (18)0.0535 (15)−0.0076 (13)−0.0047 (12)−0.0152 (14)
C200.0639 (15)0.0469 (14)0.0419 (12)−0.0100 (12)−0.0224 (11)0.0082 (10)
C210.0564 (14)0.0453 (14)0.0483 (13)−0.0087 (11)−0.0235 (11)0.0018 (11)
C220.0580 (14)0.0366 (12)0.0465 (12)−0.0103 (11)−0.0209 (11)0.0018 (10)
C230.0429 (12)0.0340 (12)0.0366 (11)−0.0050 (9)−0.0092 (9)−0.0008 (9)
C240.0468 (12)0.0322 (11)0.0343 (10)−0.0053 (9)−0.0103 (9)0.0005 (9)
C250.0449 (12)0.0423 (12)0.0330 (11)−0.0043 (10)−0.0094 (9)0.0003 (9)
C260.0414 (12)0.0431 (13)0.0361 (11)−0.0079 (10)−0.0069 (9)−0.0017 (9)
C270.0543 (14)0.0593 (16)0.0434 (13)−0.0175 (12)−0.0142 (11)−0.0027 (11)
C280.0663 (16)0.0649 (17)0.0567 (15)−0.0290 (14)−0.0160 (13)−0.0051 (13)
C290.0739 (18)0.0540 (16)0.0648 (16)−0.0317 (14)−0.0175 (14)0.0048 (13)
C300.0456 (12)0.0366 (12)0.0393 (11)−0.0104 (10)−0.0073 (10)−0.0009 (9)
C310.0434 (12)0.0368 (12)0.0337 (11)−0.0052 (9)−0.0087 (9)−0.0003 (9)
C320.0459 (13)0.0442 (13)0.0321 (10)−0.0027 (10)−0.0095 (9)0.0022 (9)
C330.0474 (13)0.0467 (13)0.0350 (11)−0.0013 (10)−0.0059 (10)0.0067 (10)
C340.085 (2)0.0583 (17)0.0612 (16)−0.0206 (15)−0.0298 (14)0.0237 (13)
C350.103 (2)0.0656 (19)0.079 (2)−0.0267 (17)−0.0296 (18)0.0329 (16)
C360.080 (2)0.070 (2)0.0656 (18)−0.0016 (16)−0.0087 (16)0.0328 (15)
C370.0715 (19)0.088 (2)0.0504 (15)−0.0020 (17)−0.0226 (14)0.0220 (15)
C380.0646 (17)0.0678 (18)0.0473 (14)−0.0062 (14)−0.0167 (12)0.0108 (13)
N10.0540 (11)0.0385 (10)0.0400 (10)−0.0086 (9)−0.0094 (9)−0.0009 (8)
N20.0573 (12)0.0411 (11)0.0536 (11)−0.0171 (9)−0.0179 (9)0.0032 (9)
N30.0521 (11)0.0370 (10)0.0377 (10)−0.0091 (8)−0.0049 (9)−0.0007 (8)
N40.0486 (11)0.0494 (12)0.0369 (9)−0.0057 (9)−0.0052 (8)−0.0018 (9)
N50.0581 (12)0.0423 (11)0.0408 (10)−0.0114 (9)−0.0165 (9)0.0046 (8)
N60.0622 (13)0.0431 (11)0.0516 (11)−0.0204 (10)−0.0146 (10)0.0027 (9)
N70.0514 (11)0.0349 (10)0.0373 (9)−0.0093 (8)−0.0149 (8)0.0042 (8)
N80.0496 (11)0.0466 (11)0.0369 (9)−0.0079 (9)−0.0134 (8)0.0042 (8)
C1—N11.327 (3)C20—C211.386 (3)
C1—C21.388 (3)C20—H200.9300
C1—H10.9300C21—C221.366 (3)
C2—C31.362 (3)C21—H210.9300
C2—H20.9300C22—C231.402 (3)
C3—C41.405 (3)C22—H220.9300
C3—H3A0.9300C23—C311.405 (3)
C4—C121.414 (3)C23—C241.420 (3)
C4—C51.426 (3)C24—N71.365 (3)
C5—N31.371 (2)C24—C251.384 (3)
C5—C61.374 (3)C25—N81.377 (3)
C6—N41.371 (3)C25—C261.430 (3)
C6—C71.427 (3)C26—C271.399 (3)
C7—C81.402 (3)C26—C301.407 (3)
C7—C111.414 (3)C27—C281.369 (3)
C8—C91.363 (3)C27—H270.9300
C8—H80.9300C28—C291.388 (4)
C9—C101.390 (3)C28—H280.9300
C9—H90.9300C29—N61.319 (3)
C10—N21.320 (3)C29—H290.9300
C10—H100.9300C30—N61.352 (3)
C11—N21.350 (3)C30—C311.468 (3)
C11—C121.459 (3)C31—N51.358 (3)
C12—N11.359 (3)C32—N81.327 (3)
C13—N41.327 (3)C32—N71.365 (3)
C13—N31.367 (3)C32—C331.468 (3)
C13—C141.472 (3)C33—C381.377 (3)
C14—C191.381 (3)C33—C341.380 (3)
C14—C151.381 (3)C34—C351.371 (4)
C15—C161.377 (3)C34—H340.9300
C15—H150.9300C35—C361.370 (4)
C16—C171.364 (4)C35—H350.9300
C16—H160.9300C36—C371.354 (4)
C17—C181.360 (4)C36—H360.9300
C17—H170.9300C37—C381.380 (4)
C18—C191.381 (3)C37—H370.9300
C18—H180.9300C38—H380.9300
C19—H190.9300N3—H30.8600
C20—N51.328 (3)N7—H70.8600
N1—C1—C2123.9 (2)C21—C22—C23119.0 (2)
N1—C1—H1118.1C21—C22—H22120.5
C2—C1—H1118.1C23—C22—H22120.5
C3—C2—C1118.9 (2)C22—C23—C31118.7 (2)
C3—C2—H2120.5C22—C23—C24124.4 (2)
C1—C2—H2120.5C31—C23—C24116.91 (18)
C2—C3—C4119.3 (2)N7—C24—C25105.51 (18)
C2—C3—H3A120.3N7—C24—C23131.11 (18)
C4—C3—H3A120.3C25—C24—C23123.3 (2)
C3—C4—C12118.36 (18)N8—C25—C24110.69 (19)
C3—C4—C5124.80 (19)N8—C25—C26128.53 (19)
C12—C4—C5116.80 (18)C24—C25—C26120.8 (2)
N3—C5—C6105.81 (17)C27—C26—C30118.2 (2)
N3—C5—C4130.73 (19)C27—C26—C25124.0 (2)
C6—C5—C4123.36 (19)C30—C26—C25117.79 (19)
N4—C6—C5110.98 (18)C28—C27—C26119.0 (2)
N4—C6—C7128.25 (19)C28—C27—H27120.5
C5—C6—C7120.76 (18)C26—C27—H27120.5
C8—C7—C11118.0 (2)C27—C28—C29118.6 (2)
C8—C7—C6123.79 (19)C27—C28—H28120.7
C11—C7—C6118.21 (19)C29—C28—H28120.7
C9—C8—C7118.9 (2)N6—C29—C28124.3 (2)
C9—C8—H8120.6N6—C29—H29117.8
C7—C8—H8120.6C28—C29—H29117.8
C8—C9—C10119.2 (2)N6—C30—C26122.15 (19)
C8—C9—H9120.4N6—C30—C31117.3 (2)
C10—C9—H9120.4C26—C30—C31120.52 (19)
N2—C10—C9124.0 (2)N5—C31—C23121.66 (18)
N2—C10—H10118.0N5—C31—C30117.79 (19)
C9—C10—H10118.0C23—C31—C30120.55 (19)
N2—C11—C7122.30 (19)N8—C32—N7112.31 (19)
N2—C11—C12117.46 (19)N8—C32—C33123.9 (2)
C7—C11—C12120.21 (18)N7—C32—C33123.74 (19)
N1—C12—C4121.24 (19)C38—C33—C34117.9 (2)
N1—C12—C11118.20 (18)C38—C33—C32119.7 (2)
C4—C12—C11120.53 (18)C34—C33—C32122.4 (2)
N4—C13—N3112.41 (17)C35—C34—C33120.9 (3)
N4—C13—C14123.79 (19)C35—C34—H34119.5
N3—C13—C14123.8 (2)C33—C34—H34119.5
C19—C14—C15118.4 (2)C36—C35—C34120.5 (3)
C19—C14—C13118.8 (2)C36—C35—H35119.7
C15—C14—C13122.9 (2)C34—C35—H35119.7
C16—C15—C14121.1 (3)C37—C36—C35119.2 (3)
C16—C15—H15119.5C37—C36—H36120.4
C14—C15—H15119.5C35—C36—H36120.4
C17—C16—C15119.8 (3)C36—C37—C38120.8 (3)
C17—C16—H16120.1C36—C37—H37119.6
C15—C16—H16120.1C38—C37—H37119.6
C18—C17—C16119.9 (2)C33—C38—C37120.7 (3)
C18—C17—H17120.1C33—C38—H38119.7
C16—C17—H17120.1C37—C38—H38119.7
C17—C18—C19120.9 (3)C1—N1—C12118.24 (18)
C17—C18—H18119.6C10—N2—C11117.7 (2)
C19—C18—H18119.6C13—N3—C5106.42 (18)
C14—C19—C18120.0 (3)C13—N3—H3126.8
C14—C19—H19120.0C5—N3—H3126.8
C18—C19—H19120.0C13—N4—C6104.37 (17)
N5—C20—C21124.2 (2)C20—N5—C31117.64 (19)
N5—C20—H20117.9C29—N6—C30117.6 (2)
C21—C20—H20117.9C24—N7—C32107.11 (17)
C22—C21—C20118.7 (2)C24—N7—H7126.4
C22—C21—H21120.6C32—N7—H7126.4
C20—C21—H21120.6C32—N8—C25104.37 (17)
D—H···AD—HH···AD···AD—H···A
N3—H3···N5i0.862.102.932 (3)164
N7—H7···N10.862.122.951 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯N5i0.862.102.932 (3)164
N7—H7⋯N10.862.122.951 (2)163

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Phenyl-1H-1,3,7,8-tetra-azacyclo-penta-[l]phenanthrene.

Authors:  Hong-Min Xi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20
  2 in total
  3 in total

1.  Aqua-(2-hydr-oxy-5-sulfonatobenzoato-κO)bis-(2-phenyl-1H-1,3,7,8-tetra-aza-cyclo-penta-[l]phenanthrene-κN,N)zinc(II).

Authors:  Qiang Han; Xiang-Cheng Wang; Xiu-Ying Li; Guan-Xin Yao; Yong-Sheng Yan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

2.  Bis(μ-5-carb-oxy-benzene-1,3-dicarboxyl-ato)-κO,O:O;κO:O,O-bis-[(2-phenyl-1,3,7,8-tetra-aza-cyclo-penta-[l]phenanthrene-κN,N)lead(II)].

Authors:  Jing Chen; Xiang-Cheng Wang; Chun-Xiang Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-24

3.  Bis(μ-3,5-dinitro-2-oxidobenzoato)-κO,O:O;κO:O,O-bis[aqua-(2-phenyl-1,3,7,8-tetra-azacyclo-penta-[l]phenanthrene-κN,N)cobalt(II)].

Authors:  Xiang-Cheng Wang; Jing Chen; Chun-Jie Wang; Chun-Xiang Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05
  3 in total

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