Literature DB >> 21201181

2-Phenyl-1H-1,3,7,8-tetra-azacyclo-penta-[l]phenanthrene.

Hong-Min Xi1.   

Abstract

There are two molecules in the asymmetric unit of the title compound, C(19)H(12)N(4). One is almost planar [dihedral angle between the fused-ring system and the phenyl ring = 2.16 (13)°] and one is somewhat twisted [dihedral angle = 13.30 (14)°]. In the crystal, the molecules are linked by N-H⋯N hydrogen bonds to result in chains.

Entities:  

Year:  2008        PMID: 21201181      PMCID: PMC2959488          DOI: 10.1107/S1600536808029759

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see Zhang et al. (2008 ▶); Yin (2008 ▶).

Experimental

Crystal data

C19H12N4 M = 296.33 Monoclinic, a = 12.3326 (15) Å b = 12.2334 (15) Å c = 19.885 (2) Å β = 104.010 (2)° V = 2910.9 (6) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 293 (2) K 0.24 × 0.21 × 0.19 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.981, T max = 0.982 23942 measured reflections 5721 independent reflections 2627 reflections with I > 2σ(I) R int = 0.089

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.167 S = 0.97 5721 reflections 415 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808029759/bt2790sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029759/bt2790Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H12N4F(000) = 1232
Mr = 296.33Dx = 1.352 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5721 reflections
a = 12.3326 (15) Åθ = 1.1–26.0°
b = 12.2334 (15) ŵ = 0.08 mm1
c = 19.885 (2) ÅT = 293 K
β = 104.010 (2)°Block, pale yellow
V = 2910.9 (6) Å30.24 × 0.21 × 0.19 mm
Z = 8
Bruker APEX CCD area-detector diffractometer5721 independent reflections
Radiation source: fine-focus sealed tube2627 reflections with I > 2σ(I)
graphiteRint = 0.089
φ and ω scansθmax = 26.0°, θmin = 1.7°
Absorption correction: multi-scan (SAINT; Bruker, 1998)h = −15→15
Tmin = 0.981, Tmax = 0.982k = −15→14
23942 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.167H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.0719P)2] where P = (Fo2 + 2Fc2)/3
5721 reflections(Δ/σ)max < 0.001
415 parametersΔρmax = 0.62 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.8134 (3)−0.7259 (3)1.53329 (17)0.0535 (9)
H11.8713−0.76281.56340.064*
C21.7966 (3)−0.6167 (2)1.54683 (16)0.0504 (8)
H21.8415−0.58221.58530.061*
C31.7134 (2)−0.5611 (2)1.50287 (16)0.0475 (8)
H31.7017−0.48751.51030.057*
C41.6452 (2)−0.6157 (2)1.44615 (15)0.0400 (7)
C51.6667 (2)−0.7273 (2)1.43635 (15)0.0399 (7)
C61.5946 (2)−0.7898 (2)1.38033 (15)0.0405 (7)
C71.5008 (2)−0.7402 (2)1.33678 (15)0.0423 (7)
C81.4329 (3)−0.8051 (3)1.28464 (16)0.0510 (8)
H81.3714−0.77481.25370.061*
C91.4585 (3)−0.9123 (3)1.28015 (17)0.0558 (9)
H91.4135−0.95711.24700.067*
C101.5533 (3)−0.9541 (3)1.32599 (18)0.0567 (9)
H101.5704−1.02741.32160.068*
C111.4801 (2)−0.6274 (2)1.34767 (15)0.0423 (7)
C121.5524 (2)−0.5691 (2)1.39835 (16)0.0417 (7)
C131.4147 (3)−0.4650 (2)1.34191 (16)0.0465 (8)
C141.3452 (3)−0.3683 (3)1.32024 (17)0.0509 (8)
C151.2420 (3)−0.3792 (3)1.27505 (18)0.0676 (10)
H151.2177−0.44741.25680.081*
C161.1741 (3)−0.2880 (4)1.25679 (19)0.0840 (13)
H161.1044−0.29591.22620.101*
C171.2078 (4)−0.1869 (3)1.2829 (2)0.0820 (12)
H171.1615−0.12661.27010.098*
C181.3100 (4)−0.1754 (3)1.3277 (2)0.0866 (13)
H181.3334−0.10701.34610.104*
C191.3788 (3)−0.2654 (3)1.3460 (2)0.0755 (12)
H191.4488−0.25671.37610.091*
C201.1864 (3)−0.9545 (3)1.14281 (18)0.0627 (10)
H201.2040−1.02821.15000.075*
C211.1001 (3)−0.9129 (3)1.16926 (18)0.0620 (10)
H211.0615−0.95751.19340.074*
C221.0735 (3)−0.8046 (3)1.15866 (17)0.0549 (9)
H221.0172−0.77411.17640.066*
C231.1315 (2)−0.7401 (2)1.12107 (15)0.0441 (8)
C241.2181 (2)−0.7894 (2)1.09701 (15)0.0425 (7)
C251.2812 (2)−0.7264 (2)1.05692 (15)0.0421 (7)
C261.4170 (3)−0.7220 (3)0.99579 (17)0.0548 (9)
H261.4723−0.75790.97970.066*
C271.3965 (3)−0.6129 (2)0.97781 (17)0.0540 (9)
H271.4362−0.57740.95000.065*
C281.3169 (3)−0.5593 (2)1.00190 (16)0.0486 (8)
H281.3023−0.48600.99120.058*
C291.2573 (2)−0.6147 (2)1.04264 (15)0.0409 (7)
C301.1711 (2)−0.5686 (2)1.06952 (15)0.0424 (8)
C311.1082 (2)−0.6270 (2)1.10553 (15)0.0429 (7)
C321.0428 (2)−0.4646 (3)1.09756 (16)0.0446 (8)
C330.9771 (2)−0.3676 (2)1.10415 (16)0.0458 (8)
C340.8959 (3)−0.3745 (3)1.14149 (18)0.0628 (10)
H340.8819−0.44111.16030.075*
C350.8357 (3)−0.2833 (3)1.1510 (2)0.0745 (11)
H350.7819−0.28871.17650.089*
C360.8546 (3)−0.1844 (3)1.1231 (2)0.0762 (12)
H360.8143−0.12281.12990.091*
C370.9327 (3)−0.1776 (3)1.0856 (2)0.0741 (11)
H370.9449−0.11111.06600.089*
C380.9945 (3)−0.2677 (3)1.07615 (18)0.0614 (9)
H381.0482−0.26121.05070.074*
N11.6202 (2)−0.8969 (2)1.37510 (13)0.0491 (7)
N21.7522 (2)−0.78066 (19)1.48026 (13)0.0470 (7)
N31.5101 (2)−0.46462 (19)1.39421 (13)0.0499 (7)
H3A1.5380−0.40981.41960.060*
N41.3927 (2)−0.5633 (2)1.31277 (13)0.0501 (7)
N51.2449 (2)−0.8967 (2)1.10833 (14)0.0530 (7)
N61.3630 (2)−0.7781 (2)1.03437 (13)0.0504 (7)
N71.0279 (2)−0.5624 (2)1.12287 (13)0.0488 (7)
N81.12765 (19)−0.46471 (18)1.06446 (12)0.0439 (6)
H8A1.1498−0.40991.04420.053*
U11U22U33U12U13U23
C10.051 (2)0.051 (2)0.053 (2)0.0050 (17)0.0021 (18)−0.0024 (17)
C20.050 (2)0.048 (2)0.049 (2)−0.0014 (17)0.0046 (17)−0.0064 (16)
C30.0459 (19)0.0405 (18)0.056 (2)−0.0025 (15)0.0121 (17)−0.0003 (16)
C40.0371 (17)0.0367 (18)0.0460 (19)−0.0029 (14)0.0099 (15)0.0026 (15)
C50.0350 (17)0.0377 (17)0.0485 (19)0.0002 (14)0.0130 (15)0.0009 (15)
C60.0411 (18)0.0381 (18)0.0437 (19)−0.0043 (14)0.0133 (16)−0.0010 (14)
C70.0394 (18)0.049 (2)0.0398 (19)−0.0057 (15)0.0126 (15)−0.0012 (15)
C80.048 (2)0.052 (2)0.052 (2)−0.0050 (16)0.0106 (17)−0.0021 (17)
C90.054 (2)0.054 (2)0.058 (2)−0.0138 (17)0.0112 (19)−0.0162 (17)
C100.062 (2)0.048 (2)0.061 (2)−0.0018 (18)0.016 (2)−0.0136 (17)
C110.0397 (18)0.0403 (18)0.048 (2)−0.0015 (15)0.0126 (16)0.0049 (15)
C120.0385 (17)0.0366 (18)0.050 (2)0.0002 (15)0.0111 (16)0.0039 (15)
C130.0422 (19)0.045 (2)0.052 (2)0.0008 (16)0.0107 (17)0.0044 (16)
C140.044 (2)0.053 (2)0.056 (2)0.0071 (17)0.0129 (17)0.0060 (17)
C150.063 (2)0.073 (3)0.059 (2)0.018 (2)0.000 (2)−0.008 (2)
C160.068 (3)0.101 (3)0.070 (3)0.032 (3)−0.007 (2)−0.004 (3)
C170.083 (3)0.070 (3)0.088 (3)0.033 (2)0.011 (3)0.014 (2)
C180.075 (3)0.055 (3)0.121 (4)0.015 (2)0.006 (3)0.006 (2)
C190.051 (2)0.054 (2)0.113 (3)0.0055 (19)0.002 (2)0.010 (2)
C200.066 (2)0.042 (2)0.082 (3)−0.0017 (18)0.022 (2)0.0144 (18)
C210.058 (2)0.060 (2)0.074 (3)−0.0027 (18)0.027 (2)0.0179 (19)
C220.050 (2)0.054 (2)0.064 (2)−0.0010 (17)0.0192 (18)0.0095 (17)
C230.0398 (18)0.0437 (19)0.048 (2)−0.0021 (15)0.0099 (16)0.0029 (15)
C240.0448 (18)0.0329 (17)0.049 (2)−0.0007 (14)0.0094 (16)0.0009 (14)
C250.0377 (17)0.0419 (18)0.0472 (19)−0.0007 (14)0.0112 (15)−0.0022 (15)
C260.053 (2)0.051 (2)0.066 (2)0.0059 (17)0.0263 (19)−0.0033 (18)
C270.057 (2)0.044 (2)0.070 (2)−0.0008 (16)0.0334 (19)0.0021 (17)
C280.054 (2)0.0377 (18)0.057 (2)−0.0006 (15)0.0200 (18)−0.0022 (15)
C290.0383 (17)0.0378 (18)0.047 (2)−0.0013 (14)0.0105 (15)−0.0022 (14)
C300.0387 (17)0.0376 (18)0.051 (2)−0.0024 (14)0.0116 (16)−0.0017 (14)
C310.0387 (17)0.0407 (18)0.0492 (19)0.0026 (15)0.0102 (15)−0.0006 (15)
C320.0407 (18)0.049 (2)0.047 (2)−0.0007 (15)0.0164 (16)−0.0027 (16)
C330.0369 (18)0.047 (2)0.052 (2)0.0052 (15)0.0083 (16)−0.0033 (16)
C340.058 (2)0.059 (2)0.076 (3)0.0065 (19)0.027 (2)0.0014 (19)
C350.062 (2)0.084 (3)0.085 (3)0.016 (2)0.032 (2)−0.003 (2)
C360.075 (3)0.066 (3)0.091 (3)0.029 (2)0.025 (2)−0.009 (2)
C370.076 (3)0.055 (2)0.096 (3)0.020 (2)0.031 (3)0.009 (2)
C380.059 (2)0.050 (2)0.079 (3)0.0112 (18)0.027 (2)0.0061 (19)
N10.0507 (16)0.0428 (16)0.0552 (18)0.0009 (13)0.0153 (14)−0.0079 (13)
N20.0444 (15)0.0413 (15)0.0538 (17)0.0008 (13)0.0091 (14)−0.0011 (13)
N30.0468 (16)0.0396 (16)0.0610 (18)0.0006 (13)0.0083 (15)0.0011 (13)
N40.0453 (16)0.0502 (17)0.0529 (17)0.0029 (13)0.0081 (14)0.0054 (14)
N50.0517 (16)0.0394 (16)0.0678 (19)0.0027 (13)0.0144 (15)0.0081 (13)
N60.0471 (16)0.0431 (16)0.0648 (19)0.0005 (13)0.0213 (15)0.0005 (13)
N70.0453 (16)0.0458 (16)0.0578 (18)0.0015 (13)0.0171 (14)0.0024 (13)
N80.0429 (15)0.0357 (15)0.0558 (17)0.0044 (12)0.0171 (14)0.0027 (12)
C1—N21.321 (4)C20—C211.393 (4)
C1—C21.388 (4)C20—H200.9300
C1—H10.9300C21—C221.369 (4)
C2—C31.359 (4)C21—H210.9300
C2—H20.9300C22—C231.397 (4)
C3—C41.402 (4)C22—H220.9300
C3—H30.9300C23—C241.407 (4)
C4—C51.413 (4)C23—C311.432 (4)
C4—C121.419 (4)C24—N51.359 (3)
C5—N21.362 (3)C24—C251.461 (4)
C5—C61.462 (4)C25—N61.356 (3)
C6—N11.357 (3)C25—C291.412 (4)
C6—C71.405 (4)C26—N61.323 (4)
C7—C81.409 (4)C26—C271.389 (4)
C7—C111.429 (4)C26—H260.9300
C8—C91.357 (4)C27—C281.361 (4)
C8—H80.9300C27—H270.9300
C9—C101.394 (4)C28—C291.394 (4)
C9—H90.9300C28—H280.9300
C10—N11.317 (4)C29—C301.418 (4)
C10—H100.9300C30—N81.374 (3)
C11—C121.373 (4)C30—C311.376 (4)
C11—N41.377 (3)C31—N71.375 (3)
C12—N31.375 (3)C32—N71.327 (3)
C13—N41.334 (3)C32—N81.364 (3)
C13—N31.368 (4)C32—C331.462 (4)
C13—C141.464 (4)C33—C381.380 (4)
C14—C151.375 (4)C33—C341.386 (4)
C14—C191.384 (4)C34—C351.378 (4)
C15—C161.390 (5)C34—H340.9300
C15—H150.9300C35—C361.374 (5)
C16—C171.365 (5)C35—H350.9300
C16—H160.9300C36—C371.356 (5)
C17—C181.364 (5)C36—H360.9300
C17—H170.9300C37—C381.378 (4)
C18—C191.385 (4)C37—H370.9300
C18—H180.9300C38—H380.9300
C19—H190.9300N3—H3A0.8600
C20—N51.315 (4)N8—H8A0.8600
N2—C1—C2124.0 (3)C21—C22—C23119.7 (3)
N2—C1—H1118.0C21—C22—H22120.2
C2—C1—H1118.0C23—C22—H22120.2
C3—C2—C1118.8 (3)C22—C23—C24118.0 (3)
C3—C2—H2120.6C22—C23—C31124.0 (3)
C1—C2—H2120.6C24—C23—C31118.0 (3)
C2—C3—C4119.4 (3)N5—C24—C23122.1 (3)
C2—C3—H3120.3N5—C24—C25117.4 (3)
C4—C3—H3120.3C23—C24—C25120.5 (3)
C3—C4—C5118.4 (3)N6—C25—C29121.4 (3)
C3—C4—C12125.2 (3)N6—C25—C24118.1 (3)
C5—C4—C12116.4 (3)C29—C25—C24120.5 (3)
N2—C5—C4121.1 (3)N6—C26—C27124.1 (3)
N2—C5—C6118.1 (3)N6—C26—H26117.9
C4—C5—C6120.7 (3)C27—C26—H26117.9
N1—C6—C7122.9 (3)C28—C27—C26118.3 (3)
N1—C6—C5117.0 (3)C28—C27—H27120.8
C7—C6—C5120.1 (3)C26—C27—H27120.8
C6—C7—C8117.6 (3)C27—C28—C29119.8 (3)
C6—C7—C11118.4 (3)C27—C28—H28120.1
C8—C7—C11124.0 (3)C29—C28—H28120.1
C9—C8—C7119.1 (3)C28—C29—C25118.3 (3)
C9—C8—H8120.4C28—C29—C30125.1 (3)
C7—C8—H8120.4C25—C29—C30116.6 (3)
C8—C9—C10118.9 (3)N8—C30—C31105.0 (3)
C8—C9—H9120.5N8—C30—C29130.9 (3)
C10—C9—H9120.5C31—C30—C29124.0 (3)
N1—C10—C9124.4 (3)N7—C31—C30111.3 (3)
N1—C10—H10117.8N7—C31—C23128.4 (3)
C9—C10—H10117.8C30—C31—C23120.3 (3)
C12—C11—N4111.4 (3)N7—C32—N8112.1 (3)
C12—C11—C7120.3 (3)N7—C32—C33124.5 (3)
N4—C11—C7128.3 (3)N8—C32—C33123.4 (3)
C11—C12—N3105.6 (3)C38—C33—C34118.2 (3)
C11—C12—C4123.9 (3)C38—C33—C32122.6 (3)
N3—C12—C4130.3 (3)C34—C33—C32119.1 (3)
N4—C13—N3112.4 (3)C35—C34—C33120.4 (3)
N4—C13—C14123.9 (3)C35—C34—H34119.8
N3—C13—C14123.8 (3)C33—C34—H34119.8
C15—C14—C19118.5 (3)C36—C35—C34120.6 (3)
C15—C14—C13119.8 (3)C36—C35—H35119.7
C19—C14—C13121.6 (3)C34—C35—H35119.7
C14—C15—C16119.8 (4)C37—C36—C35119.2 (3)
C14—C15—H15120.1C37—C36—H36120.4
C16—C15—H15120.1C35—C36—H36120.4
C17—C16—C15121.3 (4)C36—C37—C38121.1 (4)
C17—C16—H16119.4C36—C37—H37119.5
C15—C16—H16119.4C38—C37—H37119.5
C18—C17—C16119.4 (3)C37—C38—C33120.5 (3)
C18—C17—H17120.3C37—C38—H38119.7
C16—C17—H17120.3C33—C38—H38119.7
C17—C18—C19120.0 (4)C10—N1—C6117.0 (3)
C17—C18—H18120.0C1—N2—C5118.2 (3)
C19—C18—H18120.0C13—N3—C12106.6 (2)
C14—C19—C18121.1 (4)C13—N3—H3A126.7
C14—C19—H19119.4C12—N3—H3A126.7
C18—C19—H19119.4C13—N4—C11104.0 (3)
N5—C20—C21124.5 (3)C20—N5—C24117.6 (3)
N5—C20—H20117.8C26—N6—C25118.0 (3)
C21—C20—H20117.8C32—N7—C31104.4 (2)
C22—C21—C20118.1 (3)C32—N8—C30107.2 (2)
C22—C21—H21120.9C32—N8—H8A126.4
C20—C21—H21120.9C30—N8—H8A126.4
D—H···AD—HH···AD···AD—H···A
N3—H3A···N6i0.862.092.932 (4)165.
N8—H8A···N2i0.862.122.948 (3)163.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N6i0.862.092.932 (4)165
N8—H8A⋯N2i0.862.122.948 (3)163

Symmetry code: (i) .

  3 in total

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Authors:  George M Sheldrick
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2.  2-[4-(Dimethyl-amino)phen-yl]imidazo[4,5-f][1,10]phenanthroline sesquihydrate.

Authors:  Gang-Qiang Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

3.  2-(1H-Imidazo[4,5-f][1,10]phenanthrolin-2-yl)phenol monohydrate.

Authors:  Wen-Zhi Zhang; Li Li; Ying-Hui Xiao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-25
  3 in total
  1 in total

1.  2-Phenyl-1H-1,3,7,8-tetra-azacyclo-penta-[l]phenanthrene.

Authors:  Dong-Ming Liu; Xiu-Ying Li; Xiang-Cheng Wang; Chun-Xiang Li; Chun-Bo Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20
  1 in total

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