Literature DB >> 21587688

Bis(μ-3,5-dinitro-2-oxidobenzoato)-κO,O:O;κO:O,O-bis[aqua-(2-phenyl-1,3,7,8-tetra-azacyclo-penta-[l]phenanthrene-κN,N)cobalt(II)].

Xiang-Cheng Wang1, Jing Chen, Chun-Jie Wang, Chun-Xiang Li.   

Abstract

In the title compound, [Co(2)(C(7)H(2)N(2)O(7))(2)(C(19)H(12)N(4))(2)(H(2)O)(2)], the Co(II) atom is six-coordinated by two N atoms from a 2-phenyl-1H-1,3,7,8,-tetraaza-cyclo-penta-[l]phenanthrene (L) ligand, three O atoms from two 3,5-dinitro-2-oxidobenzoate (3,5-dinitro-salicylate or DNSA) ligands and one O atom from a water mol-ecule in a distorted octa-hedral geometry. The Co(II) atoms are bridged by two carboxyl-ate O atoms from two DNSA ligands, forming a centrosymmetric dinuclear structure. Neighbouring dinuclear units inter-act with each other through two types of π-π inter-actions between the L ligands [shortest centroid-centroid distance = 3.646 (3) Å] and between the L and DNSA ligands [shortest atom-to-centroid distance = 3.794 (3) Å]. N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds are observed, which lead to a three-dimensional structure.

Entities:  

Year:  2010        PMID: 21587688      PMCID: PMC3006703          DOI: 10.1107/S1600536810017629

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to metal–organic coordination polymers, see: Che et al. (2008 ▶). For a related structure, see: Liu et al. (2009 ▶). For the ligand synthesis, see: Steck & Day (1943 ▶).

Experimental

Crystal data

[Co2(C7H2N2O7)2(C19H12N4)2(H2O)2] M = 1198.76 Triclinic, a = 8.2943 (4) Å b = 11.0232 (5) Å c = 13.6139 (7) Å α = 102.690 (4)° β = 107.282 (4)° γ = 90.459 (4)° V = 1155.9 (1) Å3 Z = 1 Mo Kα radiation μ = 0.81 mm−1 T = 292 K 0.32 × 0.27 × 0.23 mm

Data collection

Oxford Diffraction Gemini R Ultra CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.771, T max = 0.829 7153 measured reflections 4041 independent reflections 2933 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.111 S = 1.00 4041 reflections 378 parameters 168 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.97 e Å−3 Δρmin = −1.00 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810017629/hy2303sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017629/hy2303Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co2(C7H2N2O7)2(C19H12N4)2(H2O)2]Z = 1
Mr = 1198.76F(000) = 610
Triclinic, P1Dx = 1.722 Mg m3Dm = 1.722 Mg m3Dm measured by not measured
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2943 (4) ÅCell parameters from 3653 reflections
b = 11.0232 (5) Åθ = 4.4–25°
c = 13.6139 (7) ŵ = 0.81 mm1
α = 102.690 (4)°T = 292 K
β = 107.282 (4)°Block, yellow
γ = 90.459 (4)°0.32 × 0.27 × 0.23 mm
V = 1155.9 (1) Å3
Oxford Diffraction Gemini R Ultra CCD diffractometer4041 independent reflections
Radiation source: fine-focus sealed tube2933 reflections with I > 2σ(I)
graphiteRint = 0.028
ω scansθmax = 25.0°, θmin = 4.4°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)h = −9→9
Tmin = 0.771, Tmax = 0.829k = −13→11
7153 measured reflectionsl = −14→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0638P)2] where P = (Fo2 + 2Fc2)/3
4041 reflections(Δ/σ)max = 0.002
378 parametersΔρmax = 0.97 e Å3
168 restraintsΔρmin = −1.00 e Å3
xyzUiso*/Ueq
C1−0.0231 (5)0.3815 (4)0.6428 (3)0.0304 (9)
H10.04520.36350.70490.037*
C2−0.1233 (6)0.4828 (4)0.6499 (3)0.0346 (10)
H2−0.12140.53070.71570.041*
C3−0.2237 (5)0.5105 (4)0.5595 (3)0.0336 (9)
H3−0.29110.57740.56310.040*
C4−0.2245 (5)0.4375 (4)0.4614 (3)0.0286 (8)
C5−0.3250 (5)0.4543 (4)0.3592 (3)0.0299 (8)
C6−0.3182 (5)0.3757 (4)0.2679 (3)0.0311 (9)
C7−0.2138 (5)0.2745 (4)0.2631 (3)0.0277 (8)
C8−0.1991 (5)0.1923 (4)0.1726 (3)0.0344 (9)
H8−0.26000.20200.10580.041*
C9−0.0946 (6)0.0974 (4)0.1829 (3)0.0369 (10)
H9−0.08380.04220.12330.044*
C10−0.0049 (5)0.0841 (4)0.2834 (3)0.0325 (9)
H100.06500.01890.28950.039*
C11−0.1165 (5)0.2559 (4)0.3627 (3)0.0247 (8)
C12−0.1215 (5)0.3373 (3)0.4607 (3)0.0249 (8)
C13−0.4998 (5)0.5157 (4)0.2329 (3)0.0322 (9)
C14−0.6334 (5)0.5801 (4)0.1703 (3)0.0356 (9)
C15−0.6963 (6)0.6831 (4)0.2208 (4)0.0438 (11)
H15−0.65180.71370.29350.053*
C16−0.8264 (7)0.7403 (5)0.1618 (4)0.0546 (13)
H16−0.86960.80910.19570.066*
C17−0.8916 (7)0.6973 (5)0.0553 (4)0.0606 (14)
H17−0.97870.73650.01670.073*
C18−0.8286 (7)0.5960 (6)0.0052 (4)0.0619 (15)
H18−0.87230.5671−0.06770.074*
C19−0.7008 (7)0.5364 (5)0.0621 (4)0.0511 (13)
H19−0.65990.46680.02760.061*
C200.3815 (5)−0.0284 (4)0.6442 (3)0.0269 (8)
C210.5087 (5)−0.0973 (4)0.6896 (3)0.0328 (9)
H210.5419−0.16370.64660.039*
C220.5884 (5)−0.0697 (4)0.7980 (3)0.0368 (9)
C230.5475 (5)0.0299 (4)0.8637 (3)0.0360 (9)
H230.60500.04990.93580.043*
C240.4202 (5)0.0997 (4)0.8213 (3)0.0323 (9)
C250.3257 (5)0.0739 (4)0.7106 (3)0.0265 (8)
C260.2996 (5)−0.0712 (4)0.5268 (3)0.0271 (8)
N1−0.0218 (4)0.3109 (3)0.5517 (2)0.0254 (7)
N2−0.0149 (4)0.1606 (3)0.3706 (2)0.0250 (6)
N3−0.4378 (4)0.5429 (3)0.3369 (3)0.0324 (8)
N4−0.4312 (4)0.4167 (3)0.1875 (3)0.0321 (8)
H4−0.45380.38500.12090.039*
N50.7161 (5)−0.1487 (4)0.8424 (3)0.0484 (9)
N60.3854 (5)0.2056 (4)0.8942 (3)0.0446 (9)
O10.1485 (3)−0.0397 (2)0.4865 (2)0.0305 (5)
O20.3743 (4)−0.1379 (3)0.4735 (2)0.0459 (8)
O30.2036 (4)0.1369 (3)0.6762 (2)0.0339 (5)
O40.7338 (5)−0.2469 (4)0.7867 (3)0.0650 (9)
O50.8033 (5)−0.1117 (4)0.9352 (3)0.0691 (10)
O60.4661 (6)0.2254 (4)0.9869 (3)0.0813 (11)
O70.2851 (6)0.2779 (4)0.8644 (3)0.0857 (10)
OW10.3241 (4)0.2215 (3)0.5222 (3)0.0345 (5)
Co0.09090 (7)0.14151 (5)0.52610 (4)0.0264 (2)
H1WA0.362 (7)0.285 (6)0.566 (5)0.064 (18)*
H1WB0.407 (7)0.184 (5)0.523 (4)0.058 (16)*
U11U22U33U12U13U23
C10.034 (2)0.031 (2)0.0251 (15)0.0072 (17)0.0071 (17)0.0072 (14)
C20.041 (3)0.031 (2)0.0312 (16)0.0091 (18)0.0129 (18)0.0042 (17)
C30.032 (2)0.031 (2)0.0381 (15)0.0114 (19)0.0118 (18)0.0079 (15)
C40.027 (2)0.0249 (19)0.0326 (12)0.0062 (16)0.0055 (16)0.0089 (14)
C50.026 (2)0.027 (2)0.0351 (13)0.0054 (16)0.0042 (16)0.0115 (14)
C60.027 (2)0.035 (2)0.0308 (14)0.0071 (17)0.0025 (16)0.0133 (14)
C70.024 (2)0.0286 (19)0.0279 (13)0.0026 (15)0.0021 (15)0.0094 (14)
C80.036 (3)0.040 (2)0.0254 (16)0.0039 (18)0.0045 (18)0.0088 (15)
C90.040 (3)0.041 (2)0.0267 (14)0.0078 (19)0.0101 (18)0.0022 (17)
C100.029 (2)0.037 (2)0.0295 (13)0.0080 (19)0.0082 (17)0.0038 (15)
C110.020 (2)0.0269 (19)0.0264 (12)0.0036 (15)0.0042 (15)0.0091 (13)
C120.021 (2)0.0230 (18)0.0279 (12)0.0032 (15)0.0026 (15)0.0069 (13)
C130.031 (2)0.030 (2)0.0349 (14)0.0058 (16)0.0057 (16)0.0121 (16)
C140.030 (2)0.036 (2)0.0398 (16)0.0072 (17)0.0048 (16)0.0158 (16)
C150.044 (3)0.036 (2)0.049 (2)0.011 (2)0.008 (2)0.0137 (18)
C160.048 (3)0.047 (3)0.072 (2)0.021 (2)0.014 (2)0.025 (2)
C170.046 (3)0.070 (3)0.069 (2)0.023 (3)0.005 (2)0.041 (2)
C180.058 (4)0.074 (4)0.045 (2)0.015 (3)−0.005 (2)0.024 (2)
C190.050 (3)0.059 (3)0.0401 (16)0.018 (2)0.005 (2)0.0139 (19)
C200.019 (2)0.029 (2)0.0318 (13)0.0034 (15)0.0040 (13)0.0095 (14)
C210.025 (2)0.035 (2)0.0384 (15)0.0094 (17)0.0063 (16)0.0134 (16)
C220.024 (2)0.047 (2)0.0400 (16)0.0079 (18)0.0040 (16)0.0203 (16)
C230.027 (2)0.051 (2)0.0278 (19)0.0026 (18)−0.0005 (17)0.0160 (16)
C240.025 (2)0.042 (2)0.0263 (13)0.0014 (17)0.0010 (14)0.0089 (14)
C250.022 (2)0.031 (2)0.0252 (13)0.0047 (15)0.0029 (14)0.0104 (13)
C260.0219 (17)0.0223 (19)0.0328 (14)0.0051 (15)0.0040 (12)0.0035 (14)
N10.0257 (17)0.0237 (14)0.0258 (11)0.0052 (13)0.0052 (13)0.0070 (11)
N20.0223 (16)0.0260 (15)0.0258 (10)0.0044 (12)0.0052 (12)0.0071 (11)
N30.032 (2)0.0288 (17)0.0350 (13)0.0090 (15)0.0051 (15)0.0109 (13)
N40.033 (2)0.0336 (18)0.0272 (14)0.0092 (15)0.0014 (14)0.0112 (13)
N50.034 (2)0.062 (2)0.0523 (18)0.0166 (19)0.0058 (15)0.0300 (15)
N60.041 (2)0.057 (2)0.0267 (13)0.0099 (17)0.0015 (15)0.0037 (14)
O10.0280 (10)0.0323 (9)0.0278 (9)0.0142 (9)0.0037 (8)0.0059 (8)
O20.0315 (15)0.0534 (16)0.0404 (14)0.0173 (13)0.0048 (12)−0.0062 (12)
O30.0321 (11)0.0361 (11)0.0274 (8)0.0156 (9)0.0014 (8)0.0050 (8)
O40.055 (2)0.0667 (19)0.0686 (19)0.0307 (17)0.0039 (16)0.0270 (15)
O50.059 (2)0.084 (2)0.0569 (17)0.0309 (18)−0.0046 (14)0.0289 (16)
O60.092 (2)0.092 (2)0.0308 (12)0.0423 (19)−0.0108 (15)−0.0076 (15)
O70.0906 (19)0.0901 (18)0.0420 (14)0.0503 (15)−0.0127 (14)−0.0113 (14)
OW10.0268 (11)0.0354 (13)0.0367 (13)0.0091 (10)0.0058 (10)0.0039 (11)
Co0.0251 (3)0.0267 (3)0.0236 (3)0.0104 (2)0.0015 (2)0.0059 (2)
C1—N11.314 (5)C17—C181.369 (8)
C1—C21.401 (5)C17—H170.9300
C1—H10.9300C18—C191.379 (6)
C2—C31.365 (6)C18—H180.9300
C2—H20.9300C19—H190.9300
C3—C41.398 (6)C20—C211.379 (5)
C3—H30.9300C20—C251.453 (5)
C4—C121.402 (5)C20—C261.503 (6)
C4—C51.446 (5)C21—C221.389 (6)
C5—C61.366 (6)C21—H210.9300
C5—N31.377 (5)C22—C231.368 (6)
C6—N41.376 (5)C22—N51.454 (5)
C6—C71.420 (5)C23—C241.373 (5)
C7—C81.398 (6)C23—H230.9300
C7—C111.416 (5)C24—C251.440 (5)
C8—C91.368 (6)C24—N61.448 (5)
C8—H80.9300C25—O31.265 (4)
C9—C101.389 (6)C26—O21.220 (5)
C9—H90.9300C26—O11.294 (4)
C10—N21.322 (5)N4—H40.8600
C10—H100.9300N5—O41.215 (5)
C11—N21.356 (5)N5—O51.229 (5)
C11—C121.447 (5)N6—O71.202 (5)
C12—N11.363 (5)N6—O61.209 (5)
C13—N31.319 (5)OW1—H1WA0.81 (6)
C13—N41.349 (5)OW1—H1WB0.80 (5)
C13—C141.475 (5)Co—N12.102 (3)
C14—C191.383 (6)Co—N22.095 (3)
C14—C151.383 (6)Co—O12.050 (2)
C15—C161.388 (6)Co—O1i2.216 (3)
C15—H150.9300Co—O31.991 (3)
C16—C171.359 (8)Co—OW12.139 (3)
C16—H160.9300
N1—C1—C2122.5 (4)C21—C20—C26116.4 (3)
N1—C1—H1118.8C25—C20—C26123.5 (3)
C2—C1—H1118.8C20—C21—C22121.5 (4)
C3—C2—C1119.4 (4)C20—C21—H21119.3
C3—C2—H2120.3C22—C21—H21119.3
C1—C2—H2120.3C23—C22—C21121.1 (4)
C2—C3—C4119.4 (4)C23—C22—N5119.6 (4)
C2—C3—H3120.3C21—C22—N5119.3 (4)
C4—C3—H3120.3C22—C23—C24118.9 (4)
C3—C4—C12117.8 (3)C22—C23—H23120.6
C3—C4—C5125.9 (3)C24—C23—H23120.6
C12—C4—C5116.3 (3)C23—C24—C25123.5 (4)
C6—C5—N3110.5 (3)C23—C24—N6116.4 (4)
C6—C5—C4121.0 (3)C25—C24—N6120.0 (3)
N3—C5—C4128.5 (4)O3—C25—C24121.1 (3)
C5—C6—N4105.3 (3)O3—C25—C20124.0 (3)
C5—C6—C7124.8 (3)C24—C25—C20114.9 (3)
N4—C6—C7129.9 (4)O2—C26—O1122.3 (4)
C8—C7—C11117.7 (3)O2—C26—C20119.4 (3)
C8—C7—C6127.5 (4)O1—C26—C20118.2 (3)
C11—C7—C6114.8 (3)C1—N1—C12118.8 (3)
C9—C8—C7119.6 (4)C1—N1—Co127.4 (2)
C9—C8—H8120.2C12—N1—Co113.2 (2)
C7—C8—H8120.2C10—N2—C11119.2 (3)
C8—C9—C10119.4 (4)C10—N2—Co127.0 (2)
C8—C9—H9120.3C11—N2—Co113.5 (2)
C10—C9—H9120.3C13—N3—C5104.8 (3)
N2—C10—C9122.7 (4)C13—N4—C6107.2 (3)
N2—C10—H10118.7C13—N4—H4126.4
C9—C10—H10118.7C6—N4—H4126.4
N2—C11—C7121.5 (3)O4—N5—O5123.0 (4)
N2—C11—C12116.9 (3)O4—N5—C22119.2 (4)
C7—C11—C12121.7 (3)O5—N5—C22117.9 (4)
N1—C12—C4122.0 (3)O7—N6—O6119.1 (4)
N1—C12—C11116.5 (3)O7—N6—C24121.8 (4)
C4—C12—C11121.5 (3)O6—N6—C24118.9 (3)
N3—C13—N4112.1 (3)C26—O1—Co120.4 (3)
N3—C13—C14125.6 (4)C26—O1—Coi125.8 (2)
N4—C13—C14122.2 (4)Co—O1—Coi100.87 (10)
C19—C14—C15119.4 (4)C25—O3—Co127.0 (2)
C19—C14—C13120.8 (4)Co—OW1—H1WA116 (4)
C15—C14—C13119.8 (4)Co—OW1—H1WB124 (4)
C14—C15—C16119.4 (5)H1WA—OW1—H1WB102 (5)
C14—C15—H15120.3O3—Co—O187.05 (10)
C16—C15—H15120.3O3—Co—N2175.08 (14)
C17—C16—C15120.9 (5)O1—Co—N296.09 (11)
C17—C16—H16119.5O3—Co—N198.70 (11)
C15—C16—H16119.5O1—Co—N1167.77 (12)
C16—C17—C18119.7 (4)N2—Co—N178.95 (12)
C16—C17—H17120.1O3—Co—OW188.76 (12)
C18—C17—H17120.1O1—Co—OW195.00 (13)
C17—C18—C19120.5 (5)N2—Co—OW187.20 (12)
C17—C18—H18119.7N1—Co—OW195.91 (13)
C19—C18—H18119.7O3—Co—O1i95.02 (11)
C18—C19—C14120.0 (5)O1—Co—O1i79.13 (10)
C18—C19—H19120.0N2—Co—O1i89.30 (11)
C14—C19—H19120.0N1—Co—O1i89.56 (11)
C21—C20—C25119.9 (4)OW1—Co—O1i172.82 (12)
D—H···AD—HH···AD···AD—H···A
N4—H4···O6ii0.862.172.948 (5)150
OW1—H1WA···N3iii0.81 (6)2.03 (6)2.831 (5)172 (5)
OW1—H1WB···O2iv0.80 (5)1.88 (5)2.662 (4)165 (5)
Table 1

Selected bond lengths (Å)

Co—N12.102 (3)
Co—N22.095 (3)
Co—O12.050 (2)
Co—O1i2.216 (3)
Co—O31.991 (3)
Co—OW12.139 (3)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O6ii0.862.172.948 (5)150
OW1—H1WA⋯N3iii0.81 (6)2.03 (6)2.831 (5)172 (5)
OW1—H1WB⋯O2iv0.80 (5)1.88 (5)2.662 (4)165 (5)

Symmetry codes: (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Phenyl-1H-1,3,7,8-tetra-azacyclo-penta-[l]phenanthrene.

Authors:  Dong-Ming Liu; Xiu-Ying Li; Xiang-Cheng Wang; Chun-Xiang Li; Chun-Bo Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20
  2 in total
  1 in total

1.  Bis[[aqua-(1H-imidazo[4,5-f][1,10]phenanthroline-κN,N)cadmium]bis-(μ-pyridine-2,3-dicarboxyl-ato)-κN,O:O;κO:N,O].

Authors:  Li-Juan Chen; Ming-Xing Yang; Hua Huang; Xiao-Hua Chen; Shen Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17
  1 in total

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