Literature DB >> 21583132

(1-Adamant-yl){4-[(2-chloro-9-isopropyl-9H-purin-6-yl)aminometh-yl]phen-yl}methanone trichloro-methane solvate.

Michal Rouchal, Marek Nečas, Robert Vícha.   

Abstract

In the title compound, C(26)H(30)ClN(5)O·CHCl(3), the purine mol-ecule consists of essentially planar benzene and purine ring systems [maximum deviation 0.010 (4) Å for both ring systems] forming a dihedral angle of 85.52 (9)°. Inter-molecular N-H⋯N hydrogen bonds link adjacent mol-ecules into centrosymmetric dimers. The structure also contains inter-molecular C-H⋯O and C-H⋯N inter-actions. The benzene rings form offset face-to-face π-π stacking inter-actions with an inter-planar distance of 3.541 (4) Å and a centroid-to-centroid distance of 4.022 (4) Å.

Entities:  

Year:  2009        PMID: 21583132      PMCID: PMC2969555          DOI: 10.1107/S1600536809016596

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was prepared according to a modified literature procedure (Fiorini & Abel, 1998 ▶). For the synthesis and/or biological activity of related compounds, see: Legraverend & Grierson (2006 ▶); Long et al. (2007 ▶). For related structures, see: Trávníček & Kryštof (2004 ▶); Trávníček & Zatloukal (2004 ▶); Trávníček & Popa (2007a ▶,b ▶) Rouchal et al. (2009 ▶).

Experimental

Crystal data

C26H30ClN5O·CHCl3 M = 583.39 Orthorhombic, a = 19.434 (12) Å b = 13.186 (7) Å c = 22.149 (11) Å V = 5676 (5) Å3 Z = 8 Mo Kα radiation μ = 0.45 mm−1 T = 120 K 0.45 × 0.40 × 0.20 mm

Data collection

Kuma KM4 CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.738, T max = 0.917 32219 measured reflections 4984 independent reflections 2981 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.177 S = 1.12 4984 reflections 334 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.54 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809016596/bi2361sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809016596/bi2361Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H30ClN5O·CHCl3Dx = 1.365 Mg m3
Mr = 583.39Melting point: 191 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 4984 reflections
a = 19.434 (12) Åθ = 2.6–25.0°
b = 13.186 (7) ŵ = 0.45 mm1
c = 22.149 (11) ÅT = 120 K
V = 5676 (5) Å3Block, colourless
Z = 80.45 × 0.40 × 0.20 mm
F(000) = 2432
Kuma KM4 CCD diffractometer4984 independent reflections
Radiation source: fine-focus sealed tube2981 reflections with I > 2σ(I)
graphiteRint = 0.044
Detector resolution: 0.06 pixels mm-1θmax = 25.0°, θmin = 2.6°
ω scansh = −23→21
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −15→15
Tmin = 0.738, Tmax = 0.917l = −26→21
32219 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.177H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0729P)2 + 9.6676P] where P = (Fo2 + 2Fc2)/3
4984 reflections(Δ/σ)max < 0.001
334 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.15090 (5)0.68048 (7)0.25476 (4)0.0305 (3)
O10.13811 (13)1.1399 (2)0.50691 (13)0.0320 (7)
N10.00385 (14)0.6307 (2)0.43338 (14)0.0230 (7)
H1A−0.01350.59310.46250.028*
N20.07497 (15)0.6451 (2)0.34920 (14)0.0226 (7)
N30.15847 (14)0.5170 (2)0.32042 (13)0.0217 (7)
N40.15553 (15)0.3704 (2)0.38744 (13)0.0233 (7)
N50.07206 (15)0.4204 (2)0.45195 (14)0.0256 (7)
C10.21373 (18)1.0428 (3)0.56796 (17)0.0254 (9)
C20.2555 (2)1.1416 (3)0.56949 (19)0.0307 (9)
H2B0.22511.19820.58190.037*
H2C0.27291.15660.52840.037*
C30.3165 (2)1.1347 (3)0.61349 (18)0.0322 (10)
H3B0.34281.20000.61320.039*
C40.2899 (2)1.1132 (3)0.67731 (19)0.0355 (10)
H4A0.26001.16960.69080.043*
H4B0.32921.10800.70560.043*
C50.2487 (2)1.0128 (3)0.67746 (18)0.0322 (10)
H5B0.23150.99880.71920.039*
C60.2956 (2)0.9260 (3)0.65710 (19)0.0361 (10)
H6A0.26950.86150.65720.043*
H6B0.33460.91920.68560.043*
C70.3232 (2)0.9470 (3)0.59318 (18)0.0299 (9)
H7A0.35390.89010.58050.036*
C80.26304 (19)0.9563 (3)0.54841 (17)0.0270 (9)
H8A0.23750.89140.54690.032*
H8B0.28110.97050.50750.032*
C90.18688 (19)1.0227 (3)0.63391 (17)0.0282 (9)
H9A0.15701.07940.64690.034*
H9B0.15930.95960.63470.034*
C100.3642 (2)1.0465 (3)0.59343 (19)0.0340 (10)
H10A0.38241.06030.55250.041*
H10B0.40361.04080.62160.041*
C110.15273 (18)1.0551 (3)0.52472 (17)0.0239 (9)
C120.10965 (18)0.9675 (3)0.50235 (17)0.0243 (9)
C130.07214 (18)0.9841 (3)0.44859 (17)0.0271 (9)
H13A0.07491.04790.42880.033*
C140.03137 (19)0.9082 (3)0.42450 (18)0.0300 (9)
H14A0.00660.92090.38830.036*
C150.02571 (18)0.8139 (3)0.45191 (17)0.0241 (8)
C160.06142 (19)0.7977 (3)0.50545 (18)0.0282 (9)
H16A0.05710.73450.52560.034*
C170.10368 (19)0.8731 (3)0.53013 (18)0.0266 (9)
H17A0.12850.85980.56620.032*
C18−0.02097 (19)0.7331 (3)0.42573 (17)0.0248 (9)
H18A−0.06680.73880.44500.030*
H18B−0.02700.74650.38210.030*
C190.05284 (17)0.5906 (3)0.39739 (16)0.0206 (8)
C200.12500 (18)0.6035 (3)0.31567 (16)0.0242 (9)
C210.13385 (17)0.4650 (3)0.36843 (16)0.0213 (8)
C220.08232 (17)0.4945 (3)0.40833 (16)0.0203 (8)
C230.11642 (19)0.3486 (3)0.43759 (17)0.0251 (9)
H23A0.12090.28740.45990.030*
C240.21277 (18)0.3110 (3)0.35970 (18)0.0279 (9)
H24A0.21290.32500.31530.033*
C250.2812 (2)0.3476 (4)0.3856 (2)0.0502 (13)
H25A0.28640.42030.37790.075*
H25B0.31910.31060.36640.075*
H25C0.28210.33520.42920.075*
C260.2007 (2)0.1985 (3)0.3687 (2)0.0460 (12)
H26A0.15640.17960.35080.069*
H26B0.20010.18310.41200.069*
H26C0.23770.16020.34910.069*
C270.5087 (2)1.1979 (4)0.7415 (2)0.0520 (14)
H27A0.47511.23340.76830.062*
Cl110.49438 (8)1.06661 (13)0.74624 (7)0.0720 (5)
Cl120.49582 (6)1.23926 (13)0.66603 (5)0.0630 (4)
Cl130.59279 (6)1.22798 (13)0.76534 (6)0.0635 (5)
U11U22U33U12U13U23
Cl10.0316 (5)0.0309 (6)0.0291 (5)0.0028 (4)0.0083 (4)0.0085 (4)
O10.0316 (15)0.0228 (15)0.0416 (18)0.0013 (12)−0.0007 (12)0.0059 (13)
N10.0249 (16)0.0199 (17)0.0242 (17)−0.0002 (13)0.0038 (13)0.0003 (14)
N20.0203 (15)0.0249 (17)0.0224 (17)0.0011 (13)0.0007 (13)0.0029 (14)
N30.0206 (15)0.0228 (17)0.0216 (17)0.0001 (13)0.0018 (13)−0.0025 (14)
N40.0219 (16)0.0286 (19)0.0194 (17)0.0041 (13)0.0006 (13)−0.0001 (14)
N50.0247 (16)0.0278 (19)0.0243 (18)0.0027 (14)−0.0008 (14)−0.0014 (15)
C10.025 (2)0.025 (2)0.026 (2)0.0004 (16)0.0031 (16)−0.0034 (17)
C20.033 (2)0.026 (2)0.033 (2)−0.0035 (18)0.0026 (18)0.0040 (18)
C30.032 (2)0.029 (2)0.035 (2)−0.0052 (18)−0.0028 (18)−0.0020 (19)
C40.040 (2)0.035 (3)0.031 (2)−0.0030 (19)0.0001 (19)−0.0044 (19)
C50.038 (2)0.031 (2)0.027 (2)−0.0051 (19)0.0010 (18)−0.0044 (19)
C60.041 (2)0.032 (2)0.035 (3)−0.0031 (19)−0.0089 (19)0.000 (2)
C70.026 (2)0.030 (2)0.034 (2)0.0021 (17)0.0001 (17)−0.0043 (18)
C80.027 (2)0.027 (2)0.027 (2)0.0045 (17)0.0045 (16)−0.0048 (17)
C90.029 (2)0.027 (2)0.029 (2)−0.0016 (17)0.0082 (17)−0.0007 (18)
C100.025 (2)0.043 (3)0.034 (2)−0.0083 (19)0.0008 (18)−0.003 (2)
C110.0235 (19)0.021 (2)0.028 (2)0.0037 (16)0.0087 (16)0.0004 (17)
C120.0178 (18)0.021 (2)0.034 (2)0.0045 (15)0.0049 (16)−0.0014 (18)
C130.0251 (19)0.026 (2)0.030 (2)0.0045 (17)0.0018 (17)0.0063 (18)
C140.025 (2)0.037 (3)0.029 (2)0.0029 (18)−0.0020 (17)0.0032 (19)
C150.0221 (19)0.025 (2)0.025 (2)0.0013 (16)0.0078 (15)−0.0009 (17)
C160.029 (2)0.029 (2)0.027 (2)−0.0014 (17)0.0030 (17)0.0037 (18)
C170.029 (2)0.022 (2)0.029 (2)−0.0009 (16)−0.0039 (17)0.0028 (17)
C180.0267 (19)0.025 (2)0.023 (2)0.0044 (16)0.0016 (16)0.0000 (17)
C190.0153 (17)0.021 (2)0.025 (2)−0.0035 (15)−0.0049 (15)−0.0059 (17)
C200.0238 (19)0.028 (2)0.021 (2)0.0000 (16)0.0008 (16)0.0018 (17)
C210.0197 (18)0.025 (2)0.020 (2)−0.0020 (15)−0.0032 (15)−0.0002 (17)
C220.0219 (18)0.021 (2)0.0178 (19)−0.0035 (15)−0.0017 (14)−0.0018 (16)
C230.030 (2)0.026 (2)0.020 (2)0.0019 (16)0.0021 (16)0.0025 (17)
C240.0207 (19)0.037 (2)0.026 (2)0.0063 (17)0.0015 (16)−0.0011 (18)
C250.028 (2)0.070 (4)0.053 (3)0.012 (2)−0.006 (2)−0.027 (3)
C260.048 (3)0.036 (3)0.054 (3)0.011 (2)0.023 (2)0.007 (2)
C270.035 (2)0.087 (4)0.034 (3)0.009 (3)−0.003 (2)−0.013 (3)
Cl110.0769 (10)0.0811 (11)0.0581 (9)0.0080 (8)0.0082 (7)−0.0164 (8)
Cl120.0379 (7)0.1163 (13)0.0348 (7)0.0103 (7)−0.0040 (5)−0.0052 (7)
Cl130.0324 (6)0.1206 (13)0.0377 (7)0.0056 (7)−0.0026 (5)−0.0095 (7)
Cl1—C201.762 (4)C8—H8A0.990
O1—C111.219 (4)C8—H8B0.990
N1—C191.349 (5)C9—H9A0.990
N1—C181.445 (5)C9—H9B0.990
N1—H1A0.880C10—H10A0.990
N2—C201.341 (5)C10—H10B0.990
N2—C191.357 (5)C11—C121.511 (5)
N3—C201.316 (5)C12—C171.392 (5)
N3—C211.353 (5)C12—C131.413 (5)
N4—C231.376 (5)C13—C141.384 (5)
N4—C211.383 (5)C13—H13A0.950
N4—C241.493 (5)C14—C151.388 (5)
N5—C231.320 (5)C14—H14A0.950
N5—C221.388 (5)C15—C161.390 (5)
C1—C111.532 (5)C15—C181.515 (5)
C1—C21.535 (5)C16—C171.401 (5)
C1—C81.552 (5)C16—H16A0.950
C1—C91.574 (5)C17—H17A0.950
C2—C31.538 (6)C18—H18A0.990
C2—H2B0.990C18—H18B0.990
C2—H2C0.990C19—C221.411 (5)
C3—C41.531 (6)C21—C221.391 (5)
C3—C101.551 (6)C23—H23A0.950
C3—H3B1.000C24—C261.515 (6)
C4—C51.548 (6)C24—C251.526 (6)
C4—H4A0.990C24—H24A1.000
C4—H4B0.990C25—H25A0.980
C5—C61.531 (6)C25—H25B0.980
C5—C91.546 (6)C25—H25C0.980
C5—H5B1.000C26—H26A0.980
C6—C71.539 (6)C26—H26B0.980
C6—H6A0.990C26—H26C0.980
C6—H6B0.990C27—Cl111.756 (6)
C7—C101.535 (6)C27—Cl131.763 (5)
C7—C81.537 (5)C27—Cl121.775 (5)
C7—H7A1.000C27—H27A1.000
C19—N1—C18122.2 (3)H10A—C10—H10B108.2
C19—N1—H1A118.9O1—C11—C12117.8 (3)
C18—N1—H1A118.9O1—C11—C1118.7 (3)
C20—N2—C19116.7 (3)C12—C11—C1123.5 (3)
C20—N3—C21109.1 (3)C17—C12—C13117.9 (3)
C23—N4—C21105.4 (3)C17—C12—C11125.8 (3)
C23—N4—C24129.4 (3)C13—C12—C11116.3 (3)
C21—N4—C24125.1 (3)C14—C13—C12120.5 (4)
C23—N5—C22104.1 (3)C14—C13—H13A119.7
C11—C1—C2109.4 (3)C12—C13—H13A119.7
C11—C1—C8112.4 (3)C13—C14—C15121.7 (4)
C2—C1—C8107.7 (3)C13—C14—H14A119.2
C11—C1—C9110.0 (3)C15—C14—H14A119.2
C2—C1—C9107.3 (3)C14—C15—C16118.1 (4)
C8—C1—C9109.9 (3)C14—C15—C18120.7 (3)
C1—C2—C3111.8 (3)C16—C15—C18121.2 (3)
C1—C2—H2B109.3C15—C16—C17121.1 (4)
C3—C2—H2B109.3C15—C16—H16A119.4
C1—C2—H2C109.3C17—C16—H16A119.4
C3—C2—H2C109.3C12—C17—C16120.7 (4)
H2B—C2—H2C107.9C12—C17—H17A119.7
C4—C3—C2109.6 (3)C16—C17—H17A119.7
C4—C3—C10109.1 (3)N1—C18—C15114.4 (3)
C2—C3—C10108.9 (3)N1—C18—H18A108.7
C4—C3—H3B109.8C15—C18—H18A108.7
C2—C3—H3B109.8N1—C18—H18B108.7
C10—C3—H3B109.8C15—C18—H18B108.7
C3—C4—C5109.6 (3)H18A—C18—H18B107.6
C3—C4—H4A109.8N1—C19—N2118.8 (3)
C5—C4—H4A109.8N1—C19—C22122.5 (3)
C3—C4—H4B109.8N2—C19—C22118.8 (3)
C5—C4—H4B109.8N3—C20—N2131.9 (3)
H4A—C4—H4B108.2N3—C20—Cl1114.8 (3)
C6—C5—C9110.0 (3)N2—C20—Cl1113.3 (3)
C6—C5—C4109.3 (3)N3—C21—N4126.1 (3)
C9—C5—C4109.2 (3)N3—C21—C22127.8 (3)
C6—C5—H5B109.4N4—C21—C22106.1 (3)
C9—C5—H5B109.4N5—C22—C21110.4 (3)
C4—C5—H5B109.4N5—C22—C19133.8 (3)
C5—C6—C7110.1 (3)C21—C22—C19115.7 (3)
C5—C6—H6A109.6N5—C23—N4113.9 (3)
C7—C6—H6A109.6N5—C23—H23A123.0
C5—C6—H6B109.6N4—C23—H23A123.0
C7—C6—H6B109.6N4—C24—C26110.1 (3)
H6A—C6—H6B108.2N4—C24—C25109.2 (3)
C10—C7—C8109.2 (3)C26—C24—C25113.3 (4)
C10—C7—C6109.4 (3)N4—C24—H24A108.0
C8—C7—C6110.0 (3)C26—C24—H24A108.0
C10—C7—H7A109.4C25—C24—H24A108.0
C8—C7—H7A109.4C24—C25—H25A109.5
C6—C7—H7A109.4C24—C25—H25B109.5
C7—C8—C1110.4 (3)H25A—C25—H25B109.5
C7—C8—H8A109.6C24—C25—H25C109.5
C1—C8—H8A109.6H25A—C25—H25C109.5
C7—C8—H8B109.6H25B—C25—H25C109.5
C1—C8—H8B109.6C24—C26—H26A109.5
H8A—C8—H8B108.1C24—C26—H26B109.5
C5—C9—C1109.6 (3)H26A—C26—H26B109.5
C5—C9—H9A109.7C24—C26—H26C109.5
C1—C9—H9A109.7H26A—C26—H26C109.5
C5—C9—H9B109.7H26B—C26—H26C109.5
C1—C9—H9B109.7Cl11—C27—Cl13110.5 (3)
H9A—C9—H9B108.2Cl11—C27—Cl12109.7 (3)
C7—C10—C3109.4 (3)Cl13—C27—Cl12110.1 (3)
C7—C10—H10A109.8Cl11—C27—H27A108.8
C3—C10—H10A109.8Cl13—C27—H27A108.8
C7—C10—H10B109.8Cl12—C27—H27A108.8
C3—C10—H10B109.8
D—H···AD—HH···AD···AD—H···A
N1—H1A···N5i0.882.223.013 (5)150
C27—H27A···N2ii1.002.593.553 (6)161
C5—H5B···N3iii1.002.663.641 (5)166
C23—H23A···O1iv0.952.233.179 (5)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N5i0.882.223.013 (5)150
C27—H27A⋯N2ii1.002.593.553 (6)161
C5—H5B⋯N3iii1.002.663.641 (5)166
C23—H23A⋯O1iv0.952.233.179 (5)175

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  Jason Long; Tejas Manchandia; Kechen Ban; Shan Gao; Claudia Miller; Joya Chandra
Journal:  Cancer Chemother Pharmacol       Date:  2006-08-19       Impact factor: 3.333

4.  2-(1-Adamant-yl)-1-{4-[(2-chloro-9-isopropyl-9H-purin-6-yl)amino-meth-yl]phen-yl}ethanone.

Authors:  Michal Rouchal; Marek Nečas; Fabiana Pires de Carvalho; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-14
  4 in total
  5 in total

1.  2-Chloro-9-isopropyl-N,N-dimethyl-9H-purin-6-amine.

Authors:  Michal Rouchal; Marek Nečas; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

2.  N-Benzyl-9-isopropyl-9H-purin-6-amine.

Authors:  David Gergela; Michal Rouchal; Peter Bartoš; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-25

3.  4-(1-Adamantylmeth-yl)-N-(2-chloro-9-isopropyl-9H-purin-6-yl)aniline.

Authors:  Michal Rouchal; Marek Nečas; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24

4.  2,6-Dichloro-7-isopropyl-7H-purine.

Authors:  Nikola Hloušková; Michal Rouchal; Marek Nečas; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02

5.  2-Chloro-N-ethyl-9-isopropyl-9H-purin-6-amine.

Authors:  Federico Andrés Giovagnoli; Michal Rouchal; Peter Bartoš; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23
  5 in total

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