Literature DB >> 22969640

2-Chloro-N-ethyl-9-isopropyl-9H-purin-6-amine.

Federico Andrés Giovagnoli, Michal Rouchal, Peter Bartoš, Robert Vícha.   

Abstract

In the title compound, C(10)H(14)ClN(5), the purine ring system is essentially planar, with an r.m.s. deviation from the least-squares plane defined by the nine constituent atoms of 0.0063 (11) Å. In the crystal, mol-ecules are linked by weak N-H⋯N and C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22969640      PMCID: PMC3435794          DOI: 10.1107/S1600536812035933

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Fiorini & Abel (1998 ▶). For related structures, see: Kubicki & Codding (2001 ▶); Rouchal et al. (2009a ▶,b ▶, 2010 ▶). For other related literature, see: Legraverend & Grierson (2006 ▶).

Experimental

Crystal data

C10H14ClN5 M = 239.71 Monoclinic, a = 8.1385 (2) Å b = 9.6245 (2) Å c = 14.8388 (3) Å β = 92.997 (2)° V = 1160.72 (4) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 120 K 0.40 × 0.40 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector Absorption correction: multi-scan CrysAlis RED (Oxford Diffraction, 2009 ▶) T min = 0.973, T max = 1.000 13543 measured reflections 2041 independent reflections 1793 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.069 S = 1.07 2041 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035933/lx2254sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035933/lx2254Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035933/lx2254Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H14ClN5F(000) = 504
Mr = 239.71Dx = 1.372 Mg m3
Monoclinic, P21/nMelting point: 392 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 8.1385 (2) ÅCell parameters from 9070 reflections
b = 9.6245 (2) Åθ = 2.9–27.2°
c = 14.8388 (3) ŵ = 0.31 mm1
β = 92.997 (2)°T = 120 K
V = 1160.72 (4) Å3Block, colourless
Z = 40.40 × 0.40 × 0.20 mm
Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector2041 independent reflections
Radiation source: Enhance (Mo) X-ray Source1793 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.015
Detector resolution: 8.4353 pixels mm-1θmax = 25.0°, θmin = 2.9°
ω scanh = −9→9
Absorption correction: multi-scan CrysAlis RED (Oxford Diffraction, 2009)k = −10→11
Tmin = 0.973, Tmax = 1.000l = −17→17
13543 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.025w = 1/[σ2(Fo2) + (0.0372P)2 + 0.3781P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.069(Δ/σ)max = 0.001
S = 1.07Δρmax = 0.21 e Å3
2041 reflectionsΔρmin = −0.22 e Å3
152 parameters
Experimental. Spectral properties of title compound:1H NMR (CDCl3): 1.30 (t, J = 7.3 Hz, 3H, NHCH2CH3), 1.57 (d, J = 6.6 Hz, 6H, CH(CH3)2), 3.72 (m, 2H, NHCH2CH3), 4.80 (septet, J = 6.9 Hz, 1H, CH(CH3)2), 5.84 (bs, 1H, NHCH2CH3), 7.76 (s, 1H, NC8HN) p.p.m.. 13 C NMR (CDCl3): 15.1(CH3), 23.0(CH3), 36.0(CH2), 47.1(CH), 119.0(C), 137.6(CH), 154.5(C), 155.5(C) p.p.m.. IR (KBr): 3103(m), 2974(m), 2933(w), 1726(w), 1605(s), 1560(m), 1481(w), 1454(w), 1435(w), 1404(m), 1362(m), 1309(s), 1227(s), 1188(w), 130(w), 1034(s), 941(m), 874(m), 785(m), 657(m), 609(w) cm-1. GC—EI—MS (200 °C, 70 eV): 241(M+(37Cl), 30), 240 (13), 239(M+(35Cl), 95), 226 (20), 225 (7), 224 (62), 213 (10), 211 (32), 199 (9), 198 (18), 197 (27), 196 (45), 184 (32), 183 (9), 182 (100), 171 (17), 169 (54), 161 (27), 160 (17), 156 (6), 155 (10), 154 (19), 153 (8), 146 (20), 134 (43), 133 (22), 120 (6), 119 (47), 118 (5), 108 (9), 107 (12), 106 (7), 93 (8), 92 (21), 80 (7), 68 (5), 67 (9), 66 (11), 65 (6), 55 (6), 54 (12), 53 (9), 44 (74), 43 (34), 42 (11), 41 (34), 40 (6) m/z(%). Elemental analysis calc for C10H14ClN4 (239.70) C 50.11, H 5.89, N 29.22; found C 50.16, H 5.92, N 29.02.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.71286 (4)0.25662 (4)0.37828 (2)0.02326 (12)
N10.46503 (13)0.39081 (11)0.30528 (7)0.0176 (2)
N20.45822 (13)0.33371 (11)0.46370 (7)0.0172 (2)
N30.24124 (14)0.38987 (12)0.55160 (7)0.0195 (3)
H30.147 (2)0.4230 (17)0.5565 (11)0.027 (4)*
N40.08494 (13)0.52739 (11)0.38017 (7)0.0194 (3)
N50.21933 (13)0.51796 (11)0.25145 (7)0.0180 (2)
C10.52134 (15)0.33857 (13)0.38306 (8)0.0169 (3)
C20.31722 (15)0.45181 (13)0.31630 (8)0.0164 (3)
C30.23370 (15)0.45883 (13)0.39493 (9)0.0164 (3)
C40.30943 (15)0.39438 (13)0.47204 (8)0.0166 (3)
C50.31812 (16)0.31996 (15)0.63006 (8)0.0211 (3)
H5A0.27940.36350.68550.025*
H5B0.43880.33290.63010.025*
C60.27990 (19)0.16560 (16)0.63171 (10)0.0312 (4)
H6A0.33270.12380.68610.047*
H6B0.32180.12120.57810.047*
H6C0.16060.15210.63210.047*
C70.08323 (16)0.56029 (14)0.29428 (9)0.0199 (3)
H7−0.00510.60940.26440.024*
C80.25198 (17)0.53989 (14)0.15553 (9)0.0210 (3)
H80.15940.59620.12770.025*
C90.40995 (17)0.62252 (15)0.14745 (9)0.0250 (3)
H9A0.40350.70890.18200.038*
H9B0.42440.64450.08390.038*
H9C0.50370.56740.17120.038*
C100.25535 (19)0.40217 (16)0.10584 (10)0.0285 (3)
H10A0.15060.35370.11190.043*
H10B0.34550.34480.13170.043*
H10C0.27220.41900.04180.043*
U11U22U33U12U13U23
Cl10.01873 (19)0.0305 (2)0.02086 (19)0.00947 (13)0.00355 (13)0.00232 (13)
N10.0166 (6)0.0174 (6)0.0189 (6)0.0010 (4)0.0019 (4)−0.0002 (4)
N20.0164 (5)0.0172 (6)0.0181 (5)0.0006 (4)0.0015 (4)−0.0013 (4)
N30.0169 (6)0.0237 (6)0.0181 (6)0.0048 (5)0.0037 (4)0.0010 (4)
N40.0170 (6)0.0193 (6)0.0220 (6)0.0021 (4)0.0018 (4)0.0002 (5)
N50.0164 (6)0.0199 (6)0.0179 (5)0.0021 (4)0.0012 (4)0.0019 (5)
C10.0148 (6)0.0156 (7)0.0203 (6)0.0007 (5)0.0019 (5)−0.0015 (5)
C20.0158 (6)0.0141 (7)0.0191 (6)−0.0012 (5)−0.0004 (5)−0.0003 (5)
C30.0151 (6)0.0143 (7)0.0200 (6)−0.0007 (5)0.0014 (5)−0.0015 (5)
C40.0169 (6)0.0136 (6)0.0192 (6)−0.0023 (5)0.0010 (5)−0.0027 (5)
C50.0202 (7)0.0265 (8)0.0166 (6)0.0029 (6)0.0020 (5)0.0003 (5)
C60.0311 (8)0.0295 (9)0.0329 (8)−0.0026 (6)0.0016 (6)0.0085 (6)
C70.0159 (6)0.0200 (7)0.0238 (7)0.0025 (5)0.0014 (5)0.0015 (6)
C80.0202 (7)0.0261 (8)0.0169 (6)0.0038 (5)0.0008 (5)0.0044 (5)
C90.0255 (7)0.0241 (8)0.0258 (7)0.0015 (6)0.0046 (6)0.0065 (6)
C100.0300 (8)0.0333 (9)0.0220 (7)−0.0012 (6)−0.0001 (6)−0.0046 (6)
Cl1—C11.7516 (13)C5—H5A0.9900
N1—C11.3189 (16)C5—H5B0.9900
N1—C21.3561 (16)C6—H6A0.9800
N2—C11.3274 (16)C6—H6B0.9800
N2—C41.3558 (16)C6—H6C0.9800
N3—C41.3312 (17)C7—H70.9500
N3—C51.4572 (17)C8—C101.518 (2)
N3—H30.837 (17)C8—C91.5217 (19)
N4—C71.3126 (17)C8—H81.0000
N4—C31.3861 (17)C9—H9A0.9800
N5—C71.3677 (17)C9—H9B0.9800
N5—C21.3733 (16)C9—H9C0.9800
N5—C81.4766 (16)C10—H10A0.9800
C2—C31.3824 (18)C10—H10B0.9800
C3—C41.4143 (18)C10—H10C0.9800
C5—C61.518 (2)
C1—N1—C2109.23 (11)C5—C6—H6A109.5
C1—N2—C4117.17 (11)C5—C6—H6B109.5
C4—N3—C5122.83 (12)H6A—C6—H6B109.5
C4—N3—H3119.4 (11)C5—C6—H6C109.5
C5—N3—H3117.6 (11)H6A—C6—H6C109.5
C7—N4—C3103.48 (10)H6B—C6—H6C109.5
C7—N5—C2105.47 (10)N4—C7—N5114.31 (12)
C7—N5—C8126.60 (11)N4—C7—H7122.8
C2—N5—C8127.93 (11)N5—C7—H7122.8
N1—C1—N2132.00 (12)N5—C8—C10110.62 (11)
N1—C1—Cl1113.92 (9)N5—C8—C9110.24 (11)
N2—C1—Cl1114.06 (9)C10—C8—C9112.42 (12)
N1—C2—N5127.02 (11)N5—C8—H8107.8
N1—C2—C3126.96 (12)C10—C8—H8107.8
N5—C2—C3106.02 (11)C9—C8—H8107.8
C2—C3—N4110.72 (11)C8—C9—H9A109.5
C2—C3—C4116.66 (12)C8—C9—H9B109.5
N4—C3—C4132.59 (12)H9A—C9—H9B109.5
N3—C4—N2118.86 (12)C8—C9—H9C109.5
N3—C4—C3123.20 (12)H9A—C9—H9C109.5
N2—C4—C3117.94 (11)H9B—C9—H9C109.5
N3—C5—C6112.64 (11)C8—C10—H10A109.5
N3—C5—H5A109.1C8—C10—H10B109.5
C6—C5—H5A109.1H10A—C10—H10B109.5
N3—C5—H5B109.1C8—C10—H10C109.5
C6—C5—H5B109.1H10A—C10—H10C109.5
H5A—C5—H5B107.8H10B—C10—H10C109.5
C2—N1—C1—N22.0 (2)C5—N3—C4—N2−1.24 (19)
C2—N1—C1—Cl1−179.87 (9)C5—N3—C4—C3178.29 (12)
C4—N2—C1—N1−1.4 (2)C1—N2—C4—N3179.07 (11)
C4—N2—C1—Cl1−179.56 (9)C1—N2—C4—C3−0.48 (17)
C1—N1—C2—N5179.90 (12)C2—C3—C4—N3−178.20 (12)
C1—N1—C2—C3−0.80 (18)N4—C3—C4—N3−0.3 (2)
C7—N5—C2—N1179.21 (12)C2—C3—C4—N21.33 (17)
C8—N5—C2—N1−0.8 (2)N4—C3—C4—N2179.24 (13)
C7—N5—C2—C3−0.21 (14)C4—N3—C5—C6−85.04 (16)
C8—N5—C2—C3179.74 (12)C3—N4—C7—N50.27 (15)
N1—C2—C3—N4−179.04 (12)C2—N5—C7—N4−0.05 (15)
N5—C2—C3—N40.38 (14)C8—N5—C7—N4−179.99 (12)
N1—C2—C3—C4−0.68 (19)C7—N5—C8—C10−114.50 (14)
N5—C2—C3—C4178.74 (11)C2—N5—C8—C1065.56 (16)
C7—N4—C3—C2−0.40 (14)C7—N5—C8—C9120.53 (14)
C7—N4—C3—C4−178.41 (14)C2—N5—C8—C9−59.40 (17)
D—H···AD—HH···AD···AD—H···A
N3—H3···N4i0.837 (16)2.205 (17)2.9979 (16)158.2 (15)
C8—H8···Cg1ii1.00 (1)2.90 (1)3.6403 (13)131 (1)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the center of gravity of the pyridine ring (C1/N1/C2–C4/ N2).

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯N4i 0.837 (16)2.205 (17)2.9979 (16)158.2 (15)
C8—H8⋯Cg1ii 1.00 (1)2.90 (1)3.6403 (13)131 (1)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  The purines: potent and versatile small molecule inhibitors and modulators of key biological targets.

Authors:  Michel Legraverend; David S Grierson
Journal:  Bioorg Med Chem       Date:  2006-02-24       Impact factor: 3.641

3.  2-Chloro-9-isopropyl-N,N-dimethyl-9H-purin-6-amine.

Authors:  Michal Rouchal; Marek Nečas; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

4.  2-(1-Adamant-yl)-1-{4-[(2-chloro-9-isopropyl-9H-purin-6-yl)amino-meth-yl]phen-yl}ethanone.

Authors:  Michal Rouchal; Marek Nečas; Fabiana Pires de Carvalho; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-14

5.  (1-Adamant-yl){4-[(2-chloro-9-isopropyl-9H-purin-6-yl)aminometh-yl]phen-yl}methanone trichloro-methane solvate.

Authors:  Michal Rouchal; Marek Nečas; Robert Vícha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14
  5 in total

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