| Literature DB >> 22969640 |
Federico Andrés Giovagnoli, Michal Rouchal, Peter Bartoš, Robert Vícha.
Abstract
In the title compound, C(10)H(14)ClN(5), the purine ring system is essentially planar, with an r.m.s. deviation from the least-squares plane defined by the nine constituent atoms of 0.0063 (11) Å. In the crystal, mol-ecules are linked by weak N-H⋯N and C-H⋯π inter-actions.Entities:
Year: 2012 PMID: 22969640 PMCID: PMC3435794 DOI: 10.1107/S1600536812035933
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H14ClN5 | |
| Monoclinic, | Melting point: 392 K |
| Hall symbol: -P 2yn | Mo |
| Cell parameters from 9070 reflections | |
| θ = 2.9–27.2° | |
| µ = 0.31 mm−1 | |
| β = 92.997 (2)° | |
| Block, colourless | |
| 0.40 × 0.40 × 0.20 mm |
| Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector | 2041 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1793 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.4353 pixels mm-1 | θmax = 25.0°, θmin = 2.9° |
| ω scan | |
| Absorption correction: multi-scan | |
| 13543 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.21 e Å−3 | |
| 2041 reflections | Δρmin = −0.22 e Å−3 |
| 152 parameters |
| Experimental. Spectral properties of title compound:1H NMR (CDCl3): 1.30 (t, J = 7.3 Hz, 3H,
NHCH2CH3), 1.57 (d, J = 6.6 Hz, 6H, CH(CH3)2), 3.72 (m,
2H, NHCH2CH3), 4.80 (septet, J = 6.9 Hz, 1H, CH(CH3)2),
5.84 (bs, 1H, NHCH2CH3), 7.76 (s, 1H, NC8HN) p.p.m.. 13 C NMR
(CDCl3): 15.1(CH3), 23.0(CH3), 36.0(CH2), 47.1(CH), 119.0(C),
137.6(CH), 154.5(C), 155.5(C) p.p.m.. IR (KBr): 3103( |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.71286 (4) | 0.25662 (4) | 0.37828 (2) | 0.02326 (12) | |
| N1 | 0.46503 (13) | 0.39081 (11) | 0.30528 (7) | 0.0176 (2) | |
| N2 | 0.45822 (13) | 0.33371 (11) | 0.46370 (7) | 0.0172 (2) | |
| N3 | 0.24124 (14) | 0.38987 (12) | 0.55160 (7) | 0.0195 (3) | |
| H3 | 0.147 (2) | 0.4230 (17) | 0.5565 (11) | 0.027 (4)* | |
| N4 | 0.08494 (13) | 0.52739 (11) | 0.38017 (7) | 0.0194 (3) | |
| N5 | 0.21933 (13) | 0.51796 (11) | 0.25145 (7) | 0.0180 (2) | |
| C1 | 0.52134 (15) | 0.33857 (13) | 0.38306 (8) | 0.0169 (3) | |
| C2 | 0.31722 (15) | 0.45181 (13) | 0.31630 (8) | 0.0164 (3) | |
| C3 | 0.23370 (15) | 0.45883 (13) | 0.39493 (9) | 0.0164 (3) | |
| C4 | 0.30943 (15) | 0.39438 (13) | 0.47204 (8) | 0.0166 (3) | |
| C5 | 0.31812 (16) | 0.31996 (15) | 0.63006 (8) | 0.0211 (3) | |
| H5A | 0.2794 | 0.3635 | 0.6855 | 0.025* | |
| H5B | 0.4388 | 0.3329 | 0.6301 | 0.025* | |
| C6 | 0.27990 (19) | 0.16560 (16) | 0.63171 (10) | 0.0312 (4) | |
| H6A | 0.3327 | 0.1238 | 0.6861 | 0.047* | |
| H6B | 0.3218 | 0.1212 | 0.5781 | 0.047* | |
| H6C | 0.1606 | 0.1521 | 0.6321 | 0.047* | |
| C7 | 0.08323 (16) | 0.56029 (14) | 0.29428 (9) | 0.0199 (3) | |
| H7 | −0.0051 | 0.6094 | 0.2644 | 0.024* | |
| C8 | 0.25198 (17) | 0.53989 (14) | 0.15553 (9) | 0.0210 (3) | |
| H8 | 0.1594 | 0.5962 | 0.1277 | 0.025* | |
| C9 | 0.40995 (17) | 0.62252 (15) | 0.14745 (9) | 0.0250 (3) | |
| H9A | 0.4035 | 0.7089 | 0.1820 | 0.038* | |
| H9B | 0.4244 | 0.6445 | 0.0839 | 0.038* | |
| H9C | 0.5037 | 0.5674 | 0.1712 | 0.038* | |
| C10 | 0.25535 (19) | 0.40217 (16) | 0.10584 (10) | 0.0285 (3) | |
| H10A | 0.1506 | 0.3537 | 0.1119 | 0.043* | |
| H10B | 0.3455 | 0.3448 | 0.1317 | 0.043* | |
| H10C | 0.2722 | 0.4190 | 0.0418 | 0.043* |
| Cl1 | 0.01873 (19) | 0.0305 (2) | 0.02086 (19) | 0.00947 (13) | 0.00355 (13) | 0.00232 (13) |
| N1 | 0.0166 (6) | 0.0174 (6) | 0.0189 (6) | 0.0010 (4) | 0.0019 (4) | −0.0002 (4) |
| N2 | 0.0164 (5) | 0.0172 (6) | 0.0181 (5) | 0.0006 (4) | 0.0015 (4) | −0.0013 (4) |
| N3 | 0.0169 (6) | 0.0237 (6) | 0.0181 (6) | 0.0048 (5) | 0.0037 (4) | 0.0010 (4) |
| N4 | 0.0170 (6) | 0.0193 (6) | 0.0220 (6) | 0.0021 (4) | 0.0018 (4) | 0.0002 (5) |
| N5 | 0.0164 (6) | 0.0199 (6) | 0.0179 (5) | 0.0021 (4) | 0.0012 (4) | 0.0019 (5) |
| C1 | 0.0148 (6) | 0.0156 (7) | 0.0203 (6) | 0.0007 (5) | 0.0019 (5) | −0.0015 (5) |
| C2 | 0.0158 (6) | 0.0141 (7) | 0.0191 (6) | −0.0012 (5) | −0.0004 (5) | −0.0003 (5) |
| C3 | 0.0151 (6) | 0.0143 (7) | 0.0200 (6) | −0.0007 (5) | 0.0014 (5) | −0.0015 (5) |
| C4 | 0.0169 (6) | 0.0136 (6) | 0.0192 (6) | −0.0023 (5) | 0.0010 (5) | −0.0027 (5) |
| C5 | 0.0202 (7) | 0.0265 (8) | 0.0166 (6) | 0.0029 (6) | 0.0020 (5) | 0.0003 (5) |
| C6 | 0.0311 (8) | 0.0295 (9) | 0.0329 (8) | −0.0026 (6) | 0.0016 (6) | 0.0085 (6) |
| C7 | 0.0159 (6) | 0.0200 (7) | 0.0238 (7) | 0.0025 (5) | 0.0014 (5) | 0.0015 (6) |
| C8 | 0.0202 (7) | 0.0261 (8) | 0.0169 (6) | 0.0038 (5) | 0.0008 (5) | 0.0044 (5) |
| C9 | 0.0255 (7) | 0.0241 (8) | 0.0258 (7) | 0.0015 (6) | 0.0046 (6) | 0.0065 (6) |
| C10 | 0.0300 (8) | 0.0333 (9) | 0.0220 (7) | −0.0012 (6) | −0.0001 (6) | −0.0046 (6) |
| Cl1—C1 | 1.7516 (13) | C5—H5A | 0.9900 |
| N1—C1 | 1.3189 (16) | C5—H5B | 0.9900 |
| N1—C2 | 1.3561 (16) | C6—H6A | 0.9800 |
| N2—C1 | 1.3274 (16) | C6—H6B | 0.9800 |
| N2—C4 | 1.3558 (16) | C6—H6C | 0.9800 |
| N3—C4 | 1.3312 (17) | C7—H7 | 0.9500 |
| N3—C5 | 1.4572 (17) | C8—C10 | 1.518 (2) |
| N3—H3 | 0.837 (17) | C8—C9 | 1.5217 (19) |
| N4—C7 | 1.3126 (17) | C8—H8 | 1.0000 |
| N4—C3 | 1.3861 (17) | C9—H9A | 0.9800 |
| N5—C7 | 1.3677 (17) | C9—H9B | 0.9800 |
| N5—C2 | 1.3733 (16) | C9—H9C | 0.9800 |
| N5—C8 | 1.4766 (16) | C10—H10A | 0.9800 |
| C2—C3 | 1.3824 (18) | C10—H10B | 0.9800 |
| C3—C4 | 1.4143 (18) | C10—H10C | 0.9800 |
| C5—C6 | 1.518 (2) | ||
| C1—N1—C2 | 109.23 (11) | C5—C6—H6A | 109.5 |
| C1—N2—C4 | 117.17 (11) | C5—C6—H6B | 109.5 |
| C4—N3—C5 | 122.83 (12) | H6A—C6—H6B | 109.5 |
| C4—N3—H3 | 119.4 (11) | C5—C6—H6C | 109.5 |
| C5—N3—H3 | 117.6 (11) | H6A—C6—H6C | 109.5 |
| C7—N4—C3 | 103.48 (10) | H6B—C6—H6C | 109.5 |
| C7—N5—C2 | 105.47 (10) | N4—C7—N5 | 114.31 (12) |
| C7—N5—C8 | 126.60 (11) | N4—C7—H7 | 122.8 |
| C2—N5—C8 | 127.93 (11) | N5—C7—H7 | 122.8 |
| N1—C1—N2 | 132.00 (12) | N5—C8—C10 | 110.62 (11) |
| N1—C1—Cl1 | 113.92 (9) | N5—C8—C9 | 110.24 (11) |
| N2—C1—Cl1 | 114.06 (9) | C10—C8—C9 | 112.42 (12) |
| N1—C2—N5 | 127.02 (11) | N5—C8—H8 | 107.8 |
| N1—C2—C3 | 126.96 (12) | C10—C8—H8 | 107.8 |
| N5—C2—C3 | 106.02 (11) | C9—C8—H8 | 107.8 |
| C2—C3—N4 | 110.72 (11) | C8—C9—H9A | 109.5 |
| C2—C3—C4 | 116.66 (12) | C8—C9—H9B | 109.5 |
| N4—C3—C4 | 132.59 (12) | H9A—C9—H9B | 109.5 |
| N3—C4—N2 | 118.86 (12) | C8—C9—H9C | 109.5 |
| N3—C4—C3 | 123.20 (12) | H9A—C9—H9C | 109.5 |
| N2—C4—C3 | 117.94 (11) | H9B—C9—H9C | 109.5 |
| N3—C5—C6 | 112.64 (11) | C8—C10—H10A | 109.5 |
| N3—C5—H5A | 109.1 | C8—C10—H10B | 109.5 |
| C6—C5—H5A | 109.1 | H10A—C10—H10B | 109.5 |
| N3—C5—H5B | 109.1 | C8—C10—H10C | 109.5 |
| C6—C5—H5B | 109.1 | H10A—C10—H10C | 109.5 |
| H5A—C5—H5B | 107.8 | H10B—C10—H10C | 109.5 |
| C2—N1—C1—N2 | 2.0 (2) | C5—N3—C4—N2 | −1.24 (19) |
| C2—N1—C1—Cl1 | −179.87 (9) | C5—N3—C4—C3 | 178.29 (12) |
| C4—N2—C1—N1 | −1.4 (2) | C1—N2—C4—N3 | 179.07 (11) |
| C4—N2—C1—Cl1 | −179.56 (9) | C1—N2—C4—C3 | −0.48 (17) |
| C1—N1—C2—N5 | 179.90 (12) | C2—C3—C4—N3 | −178.20 (12) |
| C1—N1—C2—C3 | −0.80 (18) | N4—C3—C4—N3 | −0.3 (2) |
| C7—N5—C2—N1 | 179.21 (12) | C2—C3—C4—N2 | 1.33 (17) |
| C8—N5—C2—N1 | −0.8 (2) | N4—C3—C4—N2 | 179.24 (13) |
| C7—N5—C2—C3 | −0.21 (14) | C4—N3—C5—C6 | −85.04 (16) |
| C8—N5—C2—C3 | 179.74 (12) | C3—N4—C7—N5 | 0.27 (15) |
| N1—C2—C3—N4 | −179.04 (12) | C2—N5—C7—N4 | −0.05 (15) |
| N5—C2—C3—N4 | 0.38 (14) | C8—N5—C7—N4 | −179.99 (12) |
| N1—C2—C3—C4 | −0.68 (19) | C7—N5—C8—C10 | −114.50 (14) |
| N5—C2—C3—C4 | 178.74 (11) | C2—N5—C8—C10 | 65.56 (16) |
| C7—N4—C3—C2 | −0.40 (14) | C7—N5—C8—C9 | 120.53 (14) |
| C7—N4—C3—C4 | −178.41 (14) | C2—N5—C8—C9 | −59.40 (17) |
| H··· | ||||
| N3—H3···N4i | 0.837 (16) | 2.205 (17) | 2.9979 (16) | 158.2 (15) |
| C8—H8··· | 1.00 (1) | 2.90 (1) | 3.6403 (13) | 131 (1) |
Hydrogen-bond geometry (Å, °)
Cg1 is the center of gravity of the pyridine ring (C1/N1/C2–C4/ N2).
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3⋯N4i | 0.837 (16) | 2.205 (17) | 2.9979 (16) | 158.2 (15) |
| C8—H8⋯ | 1.00 (1) | 2.90 (1) | 3.6403 (13) | 131 (1) |
Symmetry codes: (i) ; (ii) .