| Literature DB >> 21579080 |
Michal Rouchal, Marek Nečas, Robert Vícha.
Abstract
In the title compound, C(10)H(14)ClN(5), the imidazole and pyrimidine rings are essentially planar [maximum deviation = 0.0013 (14) and 0.0207 (13) Å, respectively]. In the crystal, the mol-ecules are linked by weak C-H⋯N inter-actions into chains parallel to the c axis and the crystal packing is stabilized by additional weak C-H⋯N and C-H⋯Cl inter-actions.Entities:
Year: 2010 PMID: 21579080 PMCID: PMC2979083 DOI: 10.1107/S1600536810011797
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H14ClN5 | |
| Monoclinic, | Melting point = 422–418 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 8720 reflections | |
| θ = 2.9–27.3° | |
| µ = 0.31 mm−1 | |
| β = 109.965 (3)° | |
| Block, colourless | |
| 0.40 × 0.40 × 0.30 mm |
| Oxford Diffraction Xcalibur (Sapphire2 large Be window) diffractometer | 2022 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1798 reflections with |
| graphite | |
| Detector resolution: 8.4 pixels mm-1 | θmax = 25.0°, θmin = 2.9° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 13393 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2022 reflections | (Δ/σ)max < 0.001 |
| 149 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.18 e Å−3 |
| Experimental. CrysAlis RED (Oxford Diffraction Ltd, 2009). Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.78721 (3) | 0.18146 (4) | 0.33908 (3) | 0.02432 (12) | |
| N1 | 0.80758 (9) | −0.04481 (12) | 0.48883 (9) | 0.0166 (2) | |
| N2 | 0.67313 (9) | 0.15775 (12) | 0.49228 (10) | 0.0179 (3) | |
| N3 | 0.69089 (10) | −0.14494 (13) | 0.72589 (10) | 0.0225 (3) | |
| N4 | 0.82037 (10) | −0.23853 (13) | 0.64258 (10) | 0.0184 (3) | |
| N5 | 0.55582 (10) | 0.16106 (13) | 0.61327 (10) | 0.0197 (3) | |
| C1 | 0.75175 (11) | 0.08580 (15) | 0.45552 (11) | 0.0168 (3) | |
| C2 | 0.63956 (11) | 0.09009 (15) | 0.58130 (11) | 0.0169 (3) | |
| C3 | 0.69562 (11) | −0.04950 (15) | 0.63134 (11) | 0.0167 (3) | |
| C4 | 0.76612 (12) | −0.25408 (16) | 0.72857 (13) | 0.0229 (3) | |
| H4A | 0.7816 | −0.3366 | 0.7851 | 0.027* | |
| C5 | 0.77572 (11) | −0.10713 (15) | 0.57988 (11) | 0.0157 (3) | |
| C6 | 0.51096 (13) | 0.30962 (16) | 0.56040 (14) | 0.0256 (3) | |
| H6A | 0.4933 | 0.3068 | 0.4711 | 0.038* | |
| H6B | 0.5707 | 0.3880 | 0.5968 | 0.038* | |
| H6C | 0.4388 | 0.3337 | 0.5778 | 0.038* | |
| C7 | 0.51768 (12) | 0.10497 (17) | 0.71274 (13) | 0.0248 (3) | |
| H7A | 0.5191 | −0.0068 | 0.7134 | 0.037* | |
| H7B | 0.4372 | 0.1406 | 0.6998 | 0.037* | |
| H7C | 0.5711 | 0.1435 | 0.7917 | 0.037* | |
| C8 | 0.90697 (12) | −0.34193 (16) | 0.61883 (13) | 0.0214 (3) | |
| H8A | 0.9468 | −0.2849 | 0.5691 | 0.026* | |
| C9 | 0.84438 (14) | −0.47859 (18) | 0.54375 (14) | 0.0314 (4) | |
| H9A | 0.7866 | −0.4433 | 0.4660 | 0.047* | |
| H9B | 0.8038 | −0.5358 | 0.5904 | 0.047* | |
| H9C | 0.9024 | −0.5447 | 0.5265 | 0.047* | |
| C10 | 1.00104 (13) | −0.38877 (18) | 0.73954 (14) | 0.0294 (3) | |
| H10A | 1.0359 | −0.2974 | 0.7868 | 0.044* | |
| H10B | 1.0627 | −0.4476 | 0.7221 | 0.044* | |
| H10C | 0.9650 | −0.4515 | 0.7874 | 0.044* |
| Cl1 | 0.0311 (2) | 0.0225 (2) | 0.02385 (19) | 0.00422 (14) | 0.01520 (15) | 0.00769 (13) |
| N1 | 0.0180 (5) | 0.0170 (6) | 0.0149 (5) | −0.0002 (4) | 0.0058 (4) | 0.0005 (4) |
| N2 | 0.0189 (6) | 0.0173 (6) | 0.0176 (5) | 0.0002 (4) | 0.0062 (4) | −0.0005 (4) |
| N3 | 0.0256 (6) | 0.0227 (6) | 0.0219 (6) | 0.0007 (5) | 0.0115 (5) | 0.0038 (5) |
| N4 | 0.0198 (6) | 0.0168 (6) | 0.0189 (6) | 0.0020 (4) | 0.0071 (5) | 0.0037 (5) |
| N5 | 0.0196 (6) | 0.0200 (6) | 0.0204 (6) | 0.0021 (5) | 0.0081 (5) | −0.0020 (5) |
| C1 | 0.0192 (7) | 0.0170 (7) | 0.0136 (6) | −0.0023 (5) | 0.0046 (5) | −0.0003 (5) |
| C2 | 0.0162 (6) | 0.0174 (7) | 0.0152 (6) | −0.0031 (5) | 0.0031 (5) | −0.0048 (5) |
| C3 | 0.0169 (6) | 0.0174 (7) | 0.0155 (6) | −0.0025 (5) | 0.0049 (5) | −0.0019 (5) |
| C4 | 0.0267 (7) | 0.0221 (8) | 0.0219 (7) | 0.0014 (6) | 0.0109 (6) | 0.0067 (6) |
| C5 | 0.0149 (6) | 0.0153 (7) | 0.0149 (6) | −0.0017 (5) | 0.0025 (5) | −0.0016 (5) |
| C6 | 0.0264 (7) | 0.0228 (8) | 0.0280 (8) | 0.0070 (6) | 0.0097 (6) | −0.0013 (6) |
| C7 | 0.0231 (7) | 0.0284 (8) | 0.0276 (7) | −0.0006 (6) | 0.0148 (6) | −0.0038 (6) |
| C8 | 0.0202 (7) | 0.0212 (7) | 0.0250 (7) | 0.0051 (6) | 0.0105 (6) | 0.0055 (6) |
| C9 | 0.0347 (9) | 0.0262 (8) | 0.0329 (8) | 0.0061 (7) | 0.0110 (7) | −0.0036 (7) |
| C10 | 0.0225 (7) | 0.0306 (8) | 0.0326 (8) | 0.0044 (6) | 0.0064 (6) | 0.0094 (7) |
| Cl1—C1 | 1.7575 (13) | C6—H6A | 0.9800 |
| N1—C1 | 1.3174 (17) | C6—H6B | 0.9800 |
| N1—C5 | 1.3522 (17) | C6—H6C | 0.9800 |
| N2—C1 | 1.3230 (17) | C7—H7A | 0.9800 |
| N2—C2 | 1.3630 (17) | C7—H7B | 0.9800 |
| N3—C4 | 1.3112 (18) | C7—H7C | 0.9800 |
| N3—C3 | 1.3926 (17) | C8—C9 | 1.520 (2) |
| N4—C5 | 1.3696 (17) | C8—C10 | 1.5228 (19) |
| N4—C4 | 1.3698 (18) | C8—H8A | 1.0000 |
| N4—C8 | 1.4769 (17) | C9—H9A | 0.9800 |
| N5—C2 | 1.3402 (17) | C9—H9B | 0.9800 |
| N5—C7 | 1.4610 (18) | C9—H9C | 0.9800 |
| N5—C6 | 1.4618 (18) | C10—H10A | 0.9800 |
| C2—C3 | 1.4220 (19) | C10—H10B | 0.9800 |
| C3—C5 | 1.3900 (18) | C10—H10C | 0.9800 |
| C4—H4A | 0.9500 | ||
| C1—N1—C5 | 109.04 (11) | N5—C6—H6C | 109.5 |
| C1—N2—C2 | 117.66 (11) | H6A—C6—H6C | 109.5 |
| C4—N3—C3 | 104.13 (11) | H6B—C6—H6C | 109.5 |
| C5—N4—C4 | 105.59 (11) | N5—C7—H7A | 109.5 |
| C5—N4—C8 | 126.37 (11) | N5—C7—H7B | 109.5 |
| C4—N4—C8 | 128.02 (11) | H7A—C7—H7B | 109.5 |
| C2—N5—C7 | 121.94 (11) | N5—C7—H7C | 109.5 |
| C2—N5—C6 | 120.29 (11) | H7A—C7—H7C | 109.5 |
| C7—N5—C6 | 117.26 (11) | H7B—C7—H7C | 109.5 |
| N1—C1—N2 | 132.14 (12) | N4—C8—C9 | 110.23 (11) |
| N1—C1—Cl1 | 113.90 (10) | N4—C8—C10 | 110.34 (11) |
| N2—C1—Cl1 | 113.95 (10) | C9—C8—C10 | 112.28 (12) |
| N5—C2—N2 | 116.82 (12) | N4—C8—H8A | 107.9 |
| N5—C2—C3 | 125.83 (12) | C9—C8—H8A | 107.9 |
| N2—C2—C3 | 117.35 (11) | C10—C8—H8A | 107.9 |
| C5—C3—N3 | 109.72 (11) | C8—C9—H9A | 109.5 |
| C5—C3—C2 | 116.22 (12) | C8—C9—H9B | 109.5 |
| N3—C3—C2 | 134.05 (12) | H9A—C9—H9B | 109.5 |
| N3—C4—N4 | 114.04 (12) | C8—C9—H9C | 109.5 |
| N3—C4—H4A | 123.0 | H9A—C9—H9C | 109.5 |
| N4—C4—H4A | 123.0 | H9B—C9—H9C | 109.5 |
| N1—C5—N4 | 125.94 (12) | C8—C10—H10A | 109.5 |
| N1—C5—C3 | 127.51 (12) | C8—C10—H10B | 109.5 |
| N4—C5—C3 | 106.52 (11) | H10A—C10—H10B | 109.5 |
| N5—C6—H6A | 109.5 | C8—C10—H10C | 109.5 |
| N5—C6—H6B | 109.5 | H10A—C10—H10C | 109.5 |
| H6A—C6—H6B | 109.5 | H10B—C10—H10C | 109.5 |
| H··· | ||||
| C4—H4A···N1i | 0.95 | 2.49 | 3.3728 (18) | 154 |
| C7—H7C···Cl1ii | 0.98 | 2.91 | 3.5981 (14) | 128 |
| C7—H7B···N3iii | 0.98 | 2.75 | 3.584 (2) | 143 |
| C9—H9A···N3iv | 0.98 | 2.73 | 3.6664 (18) | 161 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C4—H4 | 0.95 | 2.49 | 3.3728 (18) | 154 |
| C7—H7 | 0.98 | 2.91 | 3.5981 (14) | 128 |
| C7—H7 | 0.98 | 2.75 | 3.584 (2) | 143 |
| C9—H9 | 0.98 | 2.73 | 3.6664 (18) | 161 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .