| Literature DB >> 22719396 |
Nikola Hloušková, Michal Rouchal, Marek Nečas, Robert Vícha.
Abstract
In the title mol-ecule, C(8)H(8)Cl(2)N(4), the essentially planar imidazole and pyrimidine rings [maximum deviations of 0.0030 (15) and 0.0111 (15) Å, respectively] make a dihedral angle of 1.32 (8)°. In the crystal, the fused-ring systems are stacked approximately parallel to the bc plane, with a centroid-centroid distance between inversion-related pyrimidine rings of 3.5189 (9) Å.Entities:
Year: 2012 PMID: 22719396 PMCID: PMC3379198 DOI: 10.1107/S160053681201879X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H8Cl2N4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 426 K |
| Mo | |
| Cell parameters from 2034 reflections | |
| θ = 3.0–27.7° | |
| α = 70.499 (7)° | µ = 0.65 mm−1 |
| β = 83.820 (6)° | |
| γ = 74.204 (6)° | Block, colourless |
| 0.40 × 0.40 × 0.20 mm |
| Oxford Diffraction Xcalibur Sapphire2 diffractometer | 1656 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1419 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.4353 pixels mm-1 | θmax = 25.0°, θmin = 3.5° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 2825 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1656 reflections | (Δ/σ)max < 0.001 |
| 129 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.22677 (6) | 0.42378 (6) | −0.21906 (5) | 0.02126 (13) | |
| Cl2 | 0.31193 (6) | 0.39565 (5) | 0.35468 (5) | 0.02020 (13) | |
| N1 | 0.2261 (2) | 0.71202 (18) | −0.16073 (15) | 0.0172 (3) | |
| N2 | 0.26395 (19) | 0.44137 (17) | 0.05831 (15) | 0.0160 (3) | |
| N3 | 0.27132 (19) | 0.83054 (17) | 0.17303 (15) | 0.0150 (3) | |
| N4 | 0.2361 (2) | 0.96725 (18) | −0.09060 (15) | 0.0175 (3) | |
| C1 | 0.2390 (2) | 0.5421 (2) | −0.09346 (19) | 0.0160 (4) | |
| C2 | 0.2758 (2) | 0.5246 (2) | 0.15927 (18) | 0.0153 (4) | |
| C3 | 0.2616 (2) | 0.7041 (2) | 0.10815 (18) | 0.0139 (3) | |
| C4 | 0.2541 (2) | 0.9822 (2) | 0.04869 (19) | 0.0177 (4) | |
| H4 | 0.2549 | 1.0914 | 0.0613 | 0.021* | |
| C5 | 0.2397 (2) | 0.7924 (2) | −0.05616 (18) | 0.0153 (4) | |
| C6 | 0.2741 (2) | 0.8107 (2) | 0.34377 (18) | 0.0165 (4) | |
| H6 | 0.3683 | 0.6952 | 0.3972 | 0.020* | |
| C7 | 0.3474 (3) | 0.9569 (2) | 0.3651 (2) | 0.0245 (4) | |
| H7A | 0.4765 | 0.9589 | 0.3115 | 0.037* | |
| H7B | 0.3608 | 0.9358 | 0.4782 | 0.037* | |
| H7C | 0.2525 | 1.0708 | 0.3195 | 0.037* | |
| C8 | 0.0694 (2) | 0.8061 (2) | 0.41748 (19) | 0.0203 (4) | |
| H8A | −0.0253 | 0.9186 | 0.3670 | 0.030* | |
| H8B | 0.0733 | 0.7879 | 0.5310 | 0.030* | |
| H8C | 0.0282 | 0.7090 | 0.4020 | 0.030* |
| Cl1 | 0.0217 (2) | 0.0247 (2) | 0.0217 (2) | −0.00501 (18) | −0.00236 (17) | −0.01289 (18) |
| Cl2 | 0.0284 (3) | 0.0158 (2) | 0.0155 (2) | −0.00685 (18) | −0.00177 (17) | −0.00235 (17) |
| N1 | 0.0152 (7) | 0.0196 (8) | 0.0164 (7) | −0.0033 (6) | −0.0005 (6) | −0.0062 (6) |
| N2 | 0.0136 (7) | 0.0170 (8) | 0.0182 (7) | −0.0040 (6) | −0.0006 (6) | −0.0064 (6) |
| N3 | 0.0158 (7) | 0.0140 (7) | 0.0155 (7) | −0.0047 (6) | −0.0004 (6) | −0.0041 (6) |
| N4 | 0.0188 (8) | 0.0152 (8) | 0.0177 (7) | −0.0045 (6) | −0.0003 (6) | −0.0038 (6) |
| C1 | 0.0109 (8) | 0.0211 (9) | 0.0188 (8) | −0.0034 (7) | 0.0003 (7) | −0.0105 (7) |
| C2 | 0.0109 (8) | 0.0182 (9) | 0.0152 (8) | −0.0035 (7) | 0.0004 (6) | −0.0036 (7) |
| C3 | 0.0094 (8) | 0.0166 (9) | 0.0162 (8) | −0.0030 (7) | 0.0005 (6) | −0.0062 (7) |
| C4 | 0.0161 (9) | 0.0137 (8) | 0.0220 (9) | −0.0045 (7) | −0.0003 (7) | −0.0038 (7) |
| C5 | 0.0103 (8) | 0.0184 (9) | 0.0162 (8) | −0.0030 (7) | 0.0005 (6) | −0.0050 (7) |
| C6 | 0.0185 (9) | 0.0166 (9) | 0.0145 (8) | −0.0036 (7) | −0.0017 (7) | −0.0053 (7) |
| C7 | 0.0301 (11) | 0.0255 (10) | 0.0230 (9) | −0.0119 (8) | −0.0007 (8) | −0.0104 (8) |
| C8 | 0.0227 (10) | 0.0233 (10) | 0.0159 (8) | −0.0066 (8) | 0.0016 (7) | −0.0077 (7) |
| Cl1—C1 | 1.7437 (16) | C3—C5 | 1.414 (2) |
| Cl2—C2 | 1.7249 (16) | C4—H4 | 0.9500 |
| N1—C1 | 1.315 (2) | C6—C7 | 1.511 (2) |
| N1—C5 | 1.343 (2) | C6—C8 | 1.519 (2) |
| N2—C2 | 1.3289 (19) | C6—H6 | 1.0000 |
| N2—C1 | 1.339 (2) | C7—H7A | 0.9800 |
| N3—C4 | 1.360 (2) | C7—H7B | 0.9800 |
| N3—C3 | 1.3770 (19) | C7—H7C | 0.9800 |
| N3—C6 | 1.486 (2) | C8—H8A | 0.9800 |
| N4—C4 | 1.318 (2) | C8—H8B | 0.9800 |
| N4—C5 | 1.371 (2) | C8—H8C | 0.9800 |
| C2—C3 | 1.381 (2) | ||
| C1—N1—C5 | 112.46 (14) | N4—C5—C3 | 110.38 (14) |
| C2—N2—C1 | 115.85 (14) | N3—C6—C7 | 110.35 (13) |
| C4—N3—C3 | 105.08 (13) | N3—C6—C8 | 109.77 (12) |
| C4—N3—C6 | 127.26 (14) | C7—C6—C8 | 112.12 (14) |
| C3—N3—C6 | 127.25 (13) | N3—C6—H6 | 108.2 |
| C4—N4—C5 | 103.55 (13) | C7—C6—H6 | 108.2 |
| N1—C1—N2 | 130.38 (15) | C8—C6—H6 | 108.2 |
| N1—C1—Cl1 | 116.32 (12) | C6—C7—H7A | 109.5 |
| N2—C1—Cl1 | 113.29 (12) | C6—C7—H7B | 109.5 |
| N2—C2—C3 | 121.08 (14) | H7A—C7—H7B | 109.5 |
| N2—C2—Cl2 | 116.30 (12) | C6—C7—H7C | 109.5 |
| C3—C2—Cl2 | 122.62 (13) | H7A—C7—H7C | 109.5 |
| N3—C3—C2 | 137.57 (15) | H7B—C7—H7C | 109.5 |
| N3—C3—C5 | 105.65 (13) | C6—C8—H8A | 109.5 |
| C2—C3—C5 | 116.70 (15) | C6—C8—H8B | 109.5 |
| N4—C4—N3 | 115.34 (15) | H8A—C8—H8B | 109.5 |
| N4—C4—H4 | 122.3 | C6—C8—H8C | 109.5 |
| N3—C4—H4 | 122.3 | H8A—C8—H8C | 109.5 |
| N1—C5—N4 | 126.13 (14) | H8B—C8—H8C | 109.5 |
| N1—C5—C3 | 123.49 (15) |