Literature DB >> 22346988

(E)-3-[(2-Methyl-4-nitro-phen-yl)imino-meth-yl]-1-benzothio-phene.

Hasan Inaç, Necmi Dege, Sümeyye Gümüş, Erbil Ağar, Mustafa Serkan Soylu.   

Abstract

In the title conpound, C(16)H(12)N(2)O(2)S, the 1-benzothio-phene residue and the substituted benzene ring are oriented at a dihedral angle of 53.36 (6)°. The mol-ecular conformation features a short C-H⋯N contact. There are no significant inter-molecular contacts.

Entities:  

Year:  2012        PMID: 22346988      PMCID: PMC3275043          DOI: 10.1107/S1600536812000190

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of Schiff bases, see: Barton et al. (1979 ▶); Ingold (1969 ▶); Layer (1963 ▶). For industrial applications of n class="Chemical">Schiff bases, see: Taggi et al. (2002 ▶). For chemical properties of Schiff bases, see: Aydoğan et al. (2001 ▶). For related structures, see: Ağar et al. (2010 ▶); Ceylan et al. (2011 ▶); Dege et al. (2006 ▶); Demirtaş et al. (2009 ▶); Tecer et al. (2010 ▶).

Experimental

Crystal data

C16H12N2O2S M = 296.34 Monoclinic, a = 7.6224 (4) Å b = 7.9139 (4) Å c = 11.7536 (5) Å β = 91.341 (4)° V = 708.82 (6) Å3 Z = 2 Mo Kα radiation μ = 0.23 mm−1 T = 296 K 0.17 × 0.15 × 0.12 mm

Data collection

Oxford Diffraction SuperNova Single source at offset diffractometer with an Eos detector Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.563, T max = 1.000 2851 measured reflections 2108 independent reflections 1870 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.089 S = 1.05 2108 reflections 191 parameters 1 restraint H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 572 Friedel pairs Flack parameter: −0.07 (11) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: WinGX (Farrugia, 1997 ▶) and SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: OLEX2, WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000190/bt5774sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000190/bt5774Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000190/bt5774Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12N2O2SF(000) = 308
Mr = 296.34Dx = 1.388 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.7107 Å
Hall symbol: P 2ybCell parameters from 1356 reflections
a = 7.6224 (4) Åθ = 3.2–27.7°
b = 7.9139 (4) ŵ = 0.23 mm1
c = 11.7536 (5) ÅT = 296 K
β = 91.341 (4)°Prism, brown
V = 708.82 (6) Å30.17 × 0.15 × 0.12 mm
Z = 2
Oxford Diffraction SuperNova Single source at offset diffractometer with an Eos detector2108 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1870 reflections with I > 2σ(I)
mirrorRint = 0.013
Detector resolution: 16.0454 pixels mm-1θmax = 27.8°, θmin = 3.2°
ω scansh = −4→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −10→5
Tmin = 0.563, Tmax = 1.000l = −15→14
2851 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.089w = 1/[σ2(Fo2) + (0.0369P)2 + 0.1426P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2108 reflectionsΔρmax = 0.15 e Å3
191 parametersΔρmin = −0.14 e Å3
1 restraintAbsolute structure: Flack (1983), 572 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.07 (11)
Experimental. CrysAlis PRO (Oxford Diffraction, 2009)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7745 (4)0.7800 (4)0.3597 (2)0.0487 (7)
C20.9349 (4)0.8478 (4)0.3262 (3)0.0621 (8)
H20.96500.84970.25000.075*
C31.0455 (4)0.9109 (5)0.4081 (3)0.0662 (9)
H31.15290.95610.38760.079*
C40.9999 (4)0.9087 (5)0.5225 (3)0.0591 (8)
H41.07680.95450.57680.071*
C50.8438 (4)0.8401 (4)0.5565 (2)0.0491 (7)
H50.81650.83770.63320.059*
C60.7263 (4)0.7740 (3)0.4744 (2)0.0444 (6)
C70.5540 (3)0.6999 (5)0.4864 (2)0.0488 (6)
C80.4620 (3)0.6719 (4)0.5914 (2)0.0512 (7)
H80.34690.63300.58680.061*
C90.4821 (4)0.6556 (4)0.3838 (2)0.0585 (8)
H90.37080.60830.37590.070*
C100.4313 (3)0.6683 (4)0.7870 (2)0.0497 (7)
C110.2601 (4)0.7284 (4)0.7959 (2)0.0597 (8)
H110.20860.78880.73600.072*
C120.1660 (4)0.6983 (5)0.8939 (2)0.0639 (8)
H120.05160.73730.90040.077*
C130.2467 (4)0.6093 (4)0.9806 (2)0.0603 (9)
C140.4166 (4)0.5529 (5)0.9747 (2)0.0614 (8)
H140.46770.49441.03550.074*
C150.5110 (4)0.5831 (4)0.8783 (2)0.0539 (8)
C160.6974 (4)0.5212 (6)0.8702 (3)0.0789 (11)
H16A0.74640.50450.94530.118*
H16B0.76570.60340.83070.118*
H16C0.69860.41620.82930.118*
N10.5308 (3)0.6980 (4)0.68930 (16)0.0527 (6)
N20.1479 (5)0.5769 (5)1.0843 (3)0.0851 (10)
O10.2209 (5)0.5011 (5)1.1621 (2)0.1246 (13)
O2−0.0032 (4)0.6264 (5)1.0876 (2)0.1153 (14)
S10.61283 (11)0.69395 (13)0.27057 (6)0.0641 (2)
U11U22U33U12U13U23
C10.0627 (17)0.0399 (16)0.0435 (14)0.0049 (13)0.0028 (12)0.0020 (13)
C20.077 (2)0.055 (2)0.0559 (18)−0.0021 (18)0.0215 (15)−0.0005 (16)
C30.0635 (19)0.060 (2)0.075 (2)−0.0075 (17)0.0136 (17)0.0057 (18)
C40.0594 (17)0.057 (2)0.061 (2)−0.0096 (16)−0.0056 (15)0.0006 (16)
C50.0591 (17)0.0436 (16)0.0445 (15)−0.0019 (14)−0.0013 (12)0.0024 (14)
C60.0537 (15)0.0366 (15)0.0431 (14)0.0046 (12)0.0027 (11)0.0028 (12)
C70.0583 (15)0.0451 (16)0.0430 (12)−0.0049 (15)−0.0015 (10)0.0052 (16)
C80.0521 (14)0.0483 (18)0.0533 (15)−0.0074 (15)0.0006 (11)0.0051 (16)
C90.0659 (18)0.059 (2)0.0505 (15)−0.0105 (16)−0.0039 (13)0.0039 (15)
C100.0571 (15)0.0471 (18)0.0447 (13)−0.0116 (15)−0.0014 (11)−0.0015 (14)
C110.0644 (18)0.062 (2)0.0524 (15)−0.0003 (16)−0.0018 (13)0.0056 (16)
C120.0562 (16)0.071 (2)0.0654 (17)−0.002 (2)0.0102 (13)−0.013 (2)
C130.074 (2)0.067 (2)0.0397 (15)−0.0203 (16)0.0091 (14)−0.0096 (15)
C140.077 (2)0.063 (2)0.0440 (16)−0.0119 (17)−0.0038 (15)−0.0017 (15)
C150.0631 (18)0.058 (2)0.0409 (15)−0.0080 (14)−0.0032 (13)0.0020 (14)
C160.069 (2)0.101 (3)0.067 (2)0.011 (2)−0.0075 (17)0.014 (2)
N10.0554 (12)0.0593 (15)0.0433 (11)−0.0099 (15)0.0006 (9)0.0055 (15)
N20.100 (2)0.103 (3)0.0538 (18)−0.034 (2)0.0222 (17)−0.0200 (18)
O10.149 (3)0.169 (4)0.0565 (16)−0.017 (3)0.0217 (17)0.029 (2)
O20.096 (2)0.175 (4)0.0766 (17)−0.027 (2)0.0362 (15)−0.0328 (19)
S10.0847 (5)0.0675 (5)0.0399 (3)−0.0104 (5)−0.0024 (3)−0.0013 (4)
C1—C21.401 (4)C10—C111.395 (4)
C1—C61.406 (3)C10—C151.395 (4)
C1—S11.738 (3)C10—N11.411 (3)
C2—C31.359 (5)C11—C121.391 (4)
C2—H20.9300C11—H110.9300
C3—C41.397 (5)C12—C131.373 (5)
C3—H30.9300C12—H120.9300
C4—C51.376 (4)C13—C141.373 (5)
C4—H40.9300C13—N21.470 (4)
C5—C61.403 (4)C14—C151.377 (4)
C5—H50.9300C14—H140.9300
C6—C71.448 (4)C15—C161.508 (4)
C7—C91.359 (3)C16—H16A0.9600
C7—C81.450 (3)C16—H16B0.9600
C8—N11.271 (3)C16—H16C0.9600
C8—H80.9300N2—O11.218 (4)
C9—S11.709 (3)N2—O21.218 (4)
C9—H90.9300
C2—C1—C6122.1 (3)C11—C10—N1121.7 (3)
C2—C1—S1126.3 (2)C15—C10—N1118.3 (3)
C6—C1—S1111.6 (2)C12—C11—C10120.3 (3)
C3—C2—C1118.3 (3)C12—C11—H11119.8
C3—C2—H2120.9C10—C11—H11119.8
C1—C2—H2120.9C13—C12—C11118.2 (3)
C2—C3—C4120.8 (3)C13—C12—H12120.9
C2—C3—H3119.6C11—C12—H12120.9
C4—C3—H3119.6C12—C13—C14122.4 (3)
C5—C4—C3121.4 (3)C12—C13—N2118.4 (3)
C5—C4—H4119.3C14—C13—N2119.2 (3)
C3—C4—H4119.3C13—C14—C15119.8 (3)
C4—C5—C6119.3 (3)C13—C14—H14120.1
C4—C5—H5120.3C15—C14—H14120.1
C6—C5—H5120.3C14—C15—C10119.3 (3)
C5—C6—C1118.1 (3)C14—C15—C16120.5 (3)
C5—C6—C7130.5 (2)C10—C15—C16120.1 (3)
C1—C6—C7111.4 (2)C15—C16—H16A109.5
C9—C7—C6111.4 (2)C15—C16—H16B109.5
C9—C7—C8121.5 (3)H16A—C16—H16B109.5
C6—C7—C8127.0 (2)C15—C16—H16C109.5
N1—C8—C7123.2 (2)H16A—C16—H16C109.5
N1—C8—H8118.4H16B—C16—H16C109.5
C7—C8—H8118.4C8—N1—C10119.4 (2)
C7—C9—S1114.5 (2)O1—N2—O2123.4 (3)
C7—C9—H9122.7O1—N2—C13118.3 (4)
S1—C9—H9122.7O2—N2—C13118.3 (4)
C11—C10—C15119.9 (2)C9—S1—C191.03 (13)
C6—C1—C2—C3−0.6 (5)C10—C11—C12—C130.3 (5)
S1—C1—C2—C3179.6 (3)C11—C12—C13—C141.4 (5)
C1—C2—C3—C4−0.3 (5)C11—C12—C13—N2−179.9 (3)
C2—C3—C4—C51.2 (5)C12—C13—C14—C15−1.0 (5)
C3—C4—C5—C6−1.3 (5)N2—C13—C14—C15−179.7 (3)
C4—C5—C6—C10.3 (4)C13—C14—C15—C10−1.2 (5)
C4—C5—C6—C7−178.2 (3)C13—C14—C15—C16−179.7 (3)
C2—C1—C6—C50.6 (4)C11—C10—C15—C142.8 (5)
S1—C1—C6—C5−179.6 (2)N1—C10—C15—C14179.9 (3)
C2—C1—C6—C7179.4 (3)C11—C10—C15—C16−178.7 (3)
S1—C1—C6—C7−0.8 (3)N1—C10—C15—C16−1.6 (5)
C5—C6—C7—C9178.3 (3)C7—C8—N1—C10179.7 (3)
C1—C6—C7—C9−0.3 (4)C11—C10—N1—C8−47.3 (5)
C5—C6—C7—C8−1.9 (5)C15—C10—N1—C8135.7 (3)
C1—C6—C7—C8179.5 (3)C12—C13—N2—O1−178.5 (3)
C9—C7—C8—N1173.7 (3)C14—C13—N2—O10.3 (5)
C6—C7—C8—N1−6.1 (6)C12—C13—N2—O21.9 (5)
C6—C7—C9—S11.3 (4)C14—C13—N2—O2−179.3 (3)
C8—C7—C9—S1−178.5 (3)C7—C9—S1—C1−1.5 (3)
C15—C10—C11—C12−2.4 (5)C2—C1—S1—C9−178.9 (3)
N1—C10—C11—C12−179.4 (3)C6—C1—S1—C91.3 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5···N10.932.543.093 (4)118.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯N10.932.543.093 (4)118
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The development of the first catalyzed reaction of ketenes and imines: catalytic, asymmetric synthesis of beta-lactams.

Authors:  Andrew E Taggi; Ahmed M Hafez; Harald Wack; Brandon Young; Dana Ferraris; Thomas Lectka
Journal:  J Am Chem Soc       Date:  2002-06-12       Impact factor: 15.419

3.  (E)-5-Phenyl-N-(2-thienylmethyl-ene)-1,3,4-thia-diazole-2-amine.

Authors:  Güneş Demirtaş; Necmi Dege; Memet Sekerci; Süleyman Servi; Muharrem Dinçer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24

4.  N'-(2,3-Dihy-droxy-benzyl-idene)isonicotinohydrazide.

Authors:  Elif Tecer; Necmi Dege; Ayşin Zülfikaroğlu; Nuray Senyüz; Hümeyra Batı
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-30

5.  2-Ethyl-N-[(5-nitro-thio-phen-2-yl)methyl-idene]aniline.

Authors:  Umit Ceylan; Hasan Tanak; Sümeyye Gümüş; Erbil Ağar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  (E)-N-(1-Benzothio-phen-3-yl-methyl-idene)-2,6-dimethyl-aniline.

Authors:  Nermin Kahveci Yağcı; Necmi Dege; Sümeyye Gümüş; Erbil Ağar; Mustafa Serkan Soylu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

2.  (E)-3-Chloro-N-[(2-eth-oxy-naphthalen-1-yl)methyl-idene]aniline.

Authors:  Hilal Vesek; Canan Kazak; Ayşen Alaman Ağar; Mustafa Macit; Mustafa Serkan Soylu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-21
  2 in total

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