Literature DB >> 21582923

Ethyl 5-formyl-3,4-dimethyl-1H-pyrrole-2-carboxyl-ate.

Wei-Na Wu1, Yuan Wang, Qiu-Fen Wang.   

Abstract

The mol-ecule of the title compound, C(10)H(13)NO(3), is approximately planar (maximum deviation 0.1424 Å). In the crystal, mol-ecules are linked into inversion dimers by pairs of N-H⋯O hydrogen bonds, and the dimeric units are linked by non-classical C-H⋯O hydrogen bonds, forming a layered structure.

Entities:  

Year:  2009        PMID: 21582923      PMCID: PMC2969404          DOI: 10.1107/S160053680902323X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Kang et al. (2008 ▶). For our studies of bis­(pyrrol-2-yl-methyl­eneamine) ligands, see: Wang et al. (2008 ▶, 2009 ▶). For the synthesis, see: Wang et al. (2008 ▶).

Experimental

Crystal data

C10H13NO3 M = 195.21 Triclinic, a = 7.2223 (12) Å b = 7.4347 (12) Å c = 10.0488 (17) Å α = 78.412 (2)° β = 84.191 (2)° γ = 79.051 (2)° V = 517.84 (15) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.30 × 0.18 × 0.15 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.980, T max = 0.986 6232 measured reflections 2416 independent reflections 1692 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.212 S = 1.07 2416 reflections 129 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXL97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680902323X/gw2066sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902323X/gw2066Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13NO3Z = 2
Mr = 195.21F(000) = 208
Triclinic, P1Dx = 1.252 Mg m3
a = 7.2223 (12) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.4347 (12) ÅCell parameters from 2123 reflections
c = 10.0488 (17) Åθ = 2.1–27.7°
α = 78.412 (2)°µ = 0.09 mm1
β = 84.191 (2)°T = 296 K
γ = 79.051 (2)°Prism, colorless
V = 517.84 (15) Å30.30 × 0.18 × 0.15 mm
Bruker SMART CCD diffractometer2416 independent reflections
Radiation source: fine-focus sealed tube1692 reflections with I > 2σ(I)
graphiteRint = 0.017
φ and ω scansθmax = 27.7°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.980, Tmax = 0.986k = −9→9
6232 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.212H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.1226P)2 + 0.0669P] where P = (Fo2 + 2Fc2)/3
2416 reflections(Δ/σ)max < 0.001
129 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C40.3634 (3)0.8003 (2)1.03572 (18)0.0519 (5)
C80.2197 (3)0.8074 (3)1.1488 (2)0.0593 (5)
C30.5533 (3)0.7196 (2)1.0262 (2)0.0556 (5)
C10.4613 (3)0.8683 (3)0.8185 (2)0.0585 (5)
C20.6149 (3)0.7620 (3)0.8883 (2)0.0605 (5)
C50.4495 (4)0.9519 (4)0.6766 (2)0.0780 (7)
H5A0.55820.93280.61950.094*
C70.6715 (3)0.6084 (3)1.1392 (2)0.0720 (6)
H7A0.79780.57031.10300.108*
H7B0.61810.50011.18080.108*
H7C0.67410.68361.20600.108*
C90.1496 (4)0.7387 (5)1.3863 (3)0.1023 (10)
H9A0.11260.86601.40080.123*
H9B0.03750.69481.36930.123*
C100.2342 (5)0.6221 (6)1.5051 (3)0.1191 (12)
H10A0.14530.62651.58260.179*
H10B0.34500.66631.52120.179*
H10C0.26870.49601.49060.179*
C60.8106 (3)0.7039 (4)0.8285 (3)0.0872 (8)
H6A0.88840.63180.89930.131*
H6B0.86310.81280.78690.131*
H6C0.80590.63010.76120.131*
O30.2874 (2)0.7315 (2)1.26943 (15)0.0771 (5)
O20.0572 (2)0.8726 (3)1.13418 (17)0.0899 (6)
O10.3095 (3)1.0448 (3)0.62612 (17)0.1053 (7)
N10.3105 (2)0.8889 (2)0.90931 (15)0.0539 (4)
H1A0.19930.94840.89030.065*
U11U22U33U12U13U23
C40.0506 (9)0.0554 (9)0.0481 (10)−0.0087 (7)−0.0052 (7)−0.0051 (7)
C80.0550 (11)0.0682 (11)0.0493 (10)−0.0082 (8)−0.0053 (8)0.0004 (8)
C30.0517 (10)0.0526 (9)0.0619 (11)−0.0072 (7)−0.0068 (8)−0.0095 (8)
C10.0601 (11)0.0638 (11)0.0518 (11)−0.0101 (8)0.0033 (8)−0.0155 (8)
C20.0555 (11)0.0608 (10)0.0652 (12)−0.0072 (8)0.0024 (9)−0.0180 (9)
C50.0779 (15)0.1027 (17)0.0473 (12)−0.0053 (13)0.0084 (11)−0.0156 (11)
C70.0584 (12)0.0679 (12)0.0837 (15)0.0005 (9)−0.0165 (10)−0.0048 (10)
C90.0778 (16)0.148 (3)0.0571 (14)−0.0005 (16)0.0093 (12)0.0119 (14)
C100.108 (2)0.161 (3)0.0668 (17)−0.010 (2)0.0026 (16)0.0126 (18)
C60.0651 (14)0.0912 (16)0.0983 (19)−0.0010 (12)0.0157 (13)−0.0233 (14)
O30.0625 (9)0.1094 (12)0.0475 (8)−0.0070 (8)−0.0043 (7)0.0061 (7)
O20.0552 (9)0.1288 (15)0.0616 (10)0.0092 (9)0.0013 (7)0.0126 (9)
O10.0927 (14)0.1528 (19)0.0505 (10)0.0128 (12)−0.0006 (9)−0.0065 (10)
N10.0507 (8)0.0637 (9)0.0445 (8)−0.0055 (7)−0.0028 (6)−0.0083 (6)
C4—N11.364 (2)C7—H7B0.9600
C4—C31.390 (3)C7—H7C0.9600
C4—C81.461 (3)C9—C101.443 (4)
C8—O21.194 (2)C9—O31.463 (3)
C8—O31.330 (2)C9—H9A0.9700
C3—C21.405 (3)C9—H9B0.9700
C3—C71.500 (3)C10—H10A0.9600
C1—N11.354 (2)C10—H10B0.9600
C1—C21.396 (3)C10—H10C0.9600
C1—C51.440 (3)C6—H6A0.9600
C2—C61.498 (3)C6—H6B0.9600
C5—O11.206 (3)C6—H6C0.9600
C5—H5A0.9300N1—H1A0.8600
C7—H7A0.9600
N1—C4—C3108.93 (17)H7B—C7—H7C109.5
N1—C4—C8117.47 (17)C10—C9—O3108.7 (3)
C3—C4—C8133.61 (18)C10—C9—H9A109.9
O2—C8—O3123.29 (19)O3—C9—H9A109.9
O2—C8—C4123.38 (19)C10—C9—H9B109.9
O3—C8—C4113.32 (17)O3—C9—H9B109.9
C4—C3—C2106.33 (17)H9A—C9—H9B108.3
C4—C3—C7127.64 (19)C9—C10—H10A109.5
C2—C3—C7126.03 (19)C9—C10—H10B109.5
N1—C1—C2108.25 (17)H10A—C10—H10B109.5
N1—C1—C5121.70 (19)C9—C10—H10C109.5
C2—C1—C5130.0 (2)H10A—C10—H10C109.5
C1—C2—C3107.43 (18)H10B—C10—H10C109.5
C1—C2—C6126.8 (2)C2—C6—H6A109.5
C3—C2—C6125.8 (2)C2—C6—H6B109.5
O1—C5—C1125.0 (2)H6A—C6—H6B109.5
O1—C5—H5A117.5C2—C6—H6C109.5
C1—C5—H5A117.5H6A—C6—H6C109.5
C3—C7—H7A109.5H6B—C6—H6C109.5
C3—C7—H7B109.5C8—O3—C9115.39 (18)
H7A—C7—H7B109.5C1—N1—C4109.06 (16)
C3—C7—H7C109.5C1—N1—H1A125.5
H7A—C7—H7C109.5C4—N1—H1A125.5
N1—C4—C8—O26.4 (3)C7—C3—C2—C1−179.66 (18)
C3—C4—C8—O2−173.7 (2)C4—C3—C2—C6−179.9 (2)
N1—C4—C8—O3−174.52 (16)C7—C3—C2—C6−0.1 (3)
C3—C4—C8—O35.4 (3)N1—C1—C5—O1−0.2 (4)
N1—C4—C3—C2−0.1 (2)C2—C1—C5—O1−178.7 (2)
C8—C4—C3—C2179.9 (2)O2—C8—O3—C9−2.1 (4)
N1—C4—C3—C7−179.99 (18)C4—C8—O3—C9178.8 (2)
C8—C4—C3—C70.1 (3)C10—C9—O3—C8169.4 (3)
N1—C1—C2—C3−0.7 (2)C2—C1—N1—C40.6 (2)
C5—C1—C2—C3178.0 (2)C5—C1—N1—C4−178.23 (18)
N1—C1—C2—C6179.8 (2)C3—C4—N1—C1−0.3 (2)
C5—C1—C2—C6−1.5 (4)C8—C4—N1—C1179.68 (15)
C4—C3—C2—C10.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.072.919 (2)169
C5—H5A···O1ii0.932.543.347 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.072.919 (2)169
C5—H5A⋯O1ii0.932.543.347 (3)145

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and DNA-binding properties of four Zn(II) complexes with bis(pyrrol-2-yl-methyleneamine) ligands.

Authors:  Yuan Wang; Zheng-Yin Yang; Zhong-Ning Chen
Journal:  Bioorg Med Chem Lett       Date:  2007-10-30       Impact factor: 2.823

3.  Ethyl 5-formyl-2,4-dimethyl-1H-pyrrole-3-carboxyl-ate.

Authors:  Si-Shun Kang; Hai-Lin Li; Hai-Su Zeng; Hai-Bo Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-21
  3 in total
  4 in total

1.  Ethyl 5-[(2,3-dimethyl-5-oxo-1-phenyl-2,5-dihydro-1H-pyrazol-4-yl)imino-meth-yl]-3,4-dimethyl-1H-pyrrole-2-carboxyl-ate.

Authors:  Yuan Wang; Wei-Na Wu; Qiu-Fen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

2.  Ethyl 3,4-dimethyl-1H-pyrrole-2-carboxyl-ate.

Authors:  Wei-Na Wu; Xiao-Xia Li; Qiu-Fen Wang; Yan-Wei Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

3.  Ethyl 3,4-dimethyl-5-[(E)-(phenyl-imino)-meth-yl]-1H-pyrrole-2-carboxyl-ate.

Authors:  Wei-Na Wu; Lei Yang; Xiao-Xia Li; Bao-Feng Qin; Qiu-Fen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16

4.  Ethyl 5-{[(E)-2-(isonicotinoyl)hydrazinyl-idene]methyl}-3,4-dimethyl-1H-pyrrole-2-carboxyl-ate dihydrate.

Authors:  Zhao-Po Zhang; Yuan Wang; Ming-Jia Lu; Lei-Wei Jia; Hong-Chang Qiao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14
  4 in total

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