Literature DB >> 21588658

Ethyl 3,4-dimethyl-1H-pyrrole-2-carboxyl-ate.

Wei-Na Wu, Xiao-Xia Li, Qiu-Fen Wang, Yan-Wei Li.   

Abstract

The non-H atoms of the title compound, C(9)H(13)NO(2), are almost coplanar (r.m.s. deviation = 0.0358 Å). Weak inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into zigzag chains along the b axis with graph-set motif C(5). The chains are further linked into a three-dimensional network by C-H⋯O hydrogen bonds and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21588658      PMCID: PMC3008020          DOI: 10.1107/S160053681003179X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Schiff bases containing pyrrole units have been extensively investigated due to their excellent coordination abilities, see: Wu et al. (2003 ▶). For our studies on bis­(pyrrol-2-yl-methyl­ene­amine) ligands, see: Wang et al., (2008 ▶). For a similar structure, 5-formyl-3,4-dimethyl-1H-pyrrole-2-carboxyl­ate, see Wu et al. (2009 ▶). For the preparation, see: Helms et al. (1992 ▶). For graph-set motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C9H13NO2 M = 167.20 Monoclinic, a = 7.7485 (2) Å b = 7.0611 (2) Å c = 17.2167 (5) Å β = 95.103 (2)° V = 938.24 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.28 × 0.26 × 0.18 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.977, T max = 0.985 8174 measured reflections 2146 independent reflections 1579 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.136 S = 1.04 2146 reflections 112 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003179X/fb2205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003179X/fb2205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H13NO2F(000) = 360
Mr = 167.20Dx = 1.184 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3131 reflections
a = 7.7485 (2) Åθ = 2.4–24.8°
b = 7.0611 (2) ŵ = 0.08 mm1
c = 17.2167 (5) ÅT = 296 K
β = 95.103 (2)°Block, colourless
V = 938.24 (5) Å30.28 × 0.26 × 0.18 mm
Z = 4
Bruker SMART APEX CCD diffractometer2146 independent reflections
Radiation source: fine-focus sealed tube1579 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −9→10
Tmin = 0.977, Tmax = 0.985k = −9→9
8174 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: difference Fourier map
wR(F2) = 0.136H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0691P)2 + 0.1432P] where P = (Fo2 + 2Fc2)/3
2146 reflections(Δ/σ)max < 0.001
112 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.17 e Å3
49 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.14704 (13)0.48430 (14)0.11453 (6)0.0534 (3)
O1−0.00527 (14)0.33077 (15)0.19987 (7)0.0615 (3)
N10.24389 (16)0.04205 (17)0.20998 (7)0.0498 (3)
H10.15970.01680.23770.060*
C20.41028 (18)0.1886 (2)0.12961 (8)0.0463 (4)
C70.12075 (18)0.34064 (19)0.16247 (8)0.0445 (3)
C10.25621 (17)0.20054 (19)0.16438 (8)0.0422 (3)
C80.0178 (2)0.6323 (2)0.10833 (10)0.0582 (4)
H8A0.01250.69460.15830.070*
H8B−0.09530.57960.09230.070*
C40.3843 (2)−0.0672 (2)0.20438 (10)0.0561 (4)
H40.4060−0.18200.22990.067*
C30.49035 (19)0.0178 (2)0.15508 (9)0.0521 (4)
C90.0697 (3)0.7705 (3)0.04886 (11)0.0686 (5)
H9A0.18370.81790.06440.103*
H9B−0.01110.87380.04470.103*
H9C0.06990.7085−0.00070.103*
C50.4845 (2)0.3287 (3)0.07667 (11)0.0702 (5)
H5A0.39730.36500.03630.105*
H5B0.58060.27250.05360.105*
H5C0.52340.43860.10600.105*
C60.6620 (2)−0.0563 (3)0.13353 (13)0.0784 (6)
H6A0.75280.02780.15330.118*
H6B0.6604−0.06400.07780.118*
H6C0.6820−0.17990.15570.118*
U11U22U33U12U13U23
O20.0535 (6)0.0449 (6)0.0639 (7)0.0109 (4)0.0178 (5)0.0096 (5)
O10.0585 (7)0.0564 (7)0.0742 (8)0.0072 (5)0.0314 (6)0.0035 (5)
N10.0523 (7)0.0466 (7)0.0523 (7)0.0007 (5)0.0151 (6)0.0061 (5)
C20.0450 (7)0.0479 (8)0.0469 (8)0.0013 (6)0.0092 (6)0.0019 (6)
C70.0464 (7)0.0416 (7)0.0467 (8)−0.0002 (6)0.0107 (6)−0.0038 (6)
C10.0433 (7)0.0403 (7)0.0440 (7)0.0001 (5)0.0091 (6)0.0021 (6)
C80.0595 (9)0.0451 (8)0.0711 (10)0.0133 (7)0.0119 (8)0.0018 (8)
C40.0615 (9)0.0468 (8)0.0595 (9)0.0088 (7)0.0025 (7)0.0079 (7)
C30.0462 (8)0.0545 (9)0.0560 (9)0.0084 (6)0.0059 (7)−0.0004 (7)
C90.0832 (12)0.0541 (10)0.0685 (11)0.0128 (9)0.0066 (9)0.0102 (9)
C50.0643 (10)0.0732 (12)0.0775 (12)0.0024 (9)0.0302 (9)0.0191 (9)
C60.0571 (10)0.0842 (13)0.0950 (14)0.0260 (9)0.0134 (10)0.0026 (11)
O2—C71.3347 (17)C4—C31.371 (2)
O2—C81.4446 (17)C4—H40.9300
O1—C71.2186 (17)C3—C61.506 (2)
N1—C41.3440 (19)C9—H9A0.9600
N1—C11.3752 (17)C9—H9B0.9600
N1—H10.8600C9—H9C0.9600
C2—C11.3849 (19)C5—H5A0.9600
C2—C31.409 (2)C5—H5B0.9600
C2—C51.494 (2)C5—H5C0.9600
C7—C11.4406 (19)C6—H6A0.9600
C8—C91.495 (2)C6—H6B0.9600
C8—H8A0.9700C6—H6C0.9600
C8—H8B0.9700
C7—O2—C8116.91 (12)C4—C3—C2107.21 (13)
C4—N1—C1109.16 (12)C4—C3—C6126.27 (15)
C4—N1—H1125.4C2—C3—C6126.51 (15)
C1—N1—H1125.4C8—C9—H9A109.5
C1—C2—C3106.86 (12)C8—C9—H9B109.5
C1—C2—C5128.10 (13)H9A—C9—H9B109.5
C3—C2—C5125.02 (13)C8—C9—H9C109.5
O1—C7—O2122.94 (13)H9A—C9—H9C109.5
O1—C7—C1124.41 (14)H9B—C9—H9C109.5
O2—C7—C1112.65 (12)C2—C5—H5A109.5
N1—C1—C2107.69 (12)C2—C5—H5B109.5
N1—C1—C7118.98 (12)H5A—C5—H5B109.5
C2—C1—C7133.32 (13)C2—C5—H5C109.5
O2—C8—C9107.22 (13)H5A—C5—H5C109.5
O2—C8—H8A110.3H5B—C5—H5C109.5
C9—C8—H8A110.3C3—C6—H6A109.5
O2—C8—H8B110.3C3—C6—H6B109.5
C9—C8—H8B110.3H6A—C6—H6B109.5
H8A—C8—H8B108.5C3—C6—H6C109.5
N1—C4—C3109.09 (14)H6A—C6—H6C109.5
N1—C4—H4125.5H6B—C6—H6C109.5
C3—C4—H4125.5
C8—O2—C7—O10.1 (2)O1—C7—C1—C2−177.02 (15)
C8—O2—C7—C1179.83 (13)O2—C7—C1—C23.3 (2)
C4—N1—C1—C2−0.19 (16)C7—O2—C8—C9−177.04 (13)
C4—N1—C1—C7−178.84 (13)C1—N1—C4—C3−0.06 (18)
C3—C2—C1—N10.37 (16)N1—C4—C3—C20.29 (18)
C5—C2—C1—N1−178.16 (16)N1—C4—C3—C6179.24 (16)
C3—C2—C1—C7178.74 (16)C1—C2—C3—C4−0.40 (17)
C5—C2—C1—C70.2 (3)C5—C2—C3—C4178.18 (16)
O1—C7—C1—N11.2 (2)C1—C2—C3—C6−179.35 (16)
O2—C7—C1—N1−178.46 (12)C5—C2—C3—C6−0.8 (3)
Cg1 is the centroid of the N1,C1–C4 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.132.9264 (16)154.
C5—H5A···O20.962.602.962 (2)103.
C4—H4···Cg1ii0.932.923.7520 (17)149
C9—H9A···Cg1iii0.962.863.650 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1,C1–C4 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.132.9264 (16)154
C4—H4⋯Cg1ii0.932.923.7520 (17)149
C9—H9ACg1iii0.962.863.650 (2)141

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  Double-stranded helicates, triangles, and squares formed by the self-assembly of pyrrol-2-ylmethyleneamines and ZnII ions.

Authors:  Zhikun Wu; Qingqi Chen; Shaoxiang Xiong; Bin Xin; Zhenwen Zhao; Lijin Jiang; Jin Shi Ma
Journal:  Angew Chem Int Ed Engl       Date:  2003-07-21       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Synthesis, characterization and DNA-binding properties of four Zn(II) complexes with bis(pyrrol-2-yl-methyleneamine) ligands.

Authors:  Yuan Wang; Zheng-Yin Yang; Zhong-Ning Chen
Journal:  Bioorg Med Chem Lett       Date:  2007-10-30       Impact factor: 2.823

5.  Ethyl 5-formyl-3,4-dimethyl-1H-pyrrole-2-carboxyl-ate.

Authors:  Wei-Na Wu; Yuan Wang; Qiu-Fen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20
  5 in total

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