Literature DB >> 21583616

Ethyl 5-[(2,3-dimethyl-5-oxo-1-phenyl-2,5-dihydro-1H-pyrazol-4-yl)imino-meth-yl]-3,4-dimethyl-1H-pyrrole-2-carboxyl-ate.

Yuan Wang1, Wei-Na Wu, Qiu-Fen Wang.   

Abstract

In the title compound, C(21)H(24)N(4)O(3), the mol-ecule has an E configuration about the imine C=N double bond. Inter-molecular N-H⋯O hydrogen bonds assemble mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2009        PMID: 21583616      PMCID: PMC2977180          DOI: 10.1107/S1600536809027780

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For studies on the complexes of bis­(pyrrol-2-yl-methyl­ene­amine) ligands, see: Wang et al. (2008 ▶); Yang et al. (2003 ▶). For the structure of 5-formyl-3,4-dimethyl-1H-pyrrole-2-carb­oxyl­ate, see: Wu et al. (2009 ▶).

Experimental

Crystal data

C21H24N4O3 M = 380.44 Monoclinic, a = 13.421 (2) Å b = 20.141 (3) Å c = 7.5477 (13) Å β = 96.147 (2)° V = 2028.5 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.30 × 0.21 × 0.08 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.979, T max = 0.993 23826 measured reflections 4717 independent reflections 2622 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.149 S = 1.01 4717 reflections 258 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809027780/gk2222sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809027780/gk2222Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24N4O3F(000) = 808
Mr = 380.44Dx = 1.246 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2702 reflections
a = 13.421 (2) Åθ = 2.5–20.3°
b = 20.141 (3) ŵ = 0.09 mm1
c = 7.5477 (13) ÅT = 296 K
β = 96.147 (2)°Block, yellow
V = 2028.5 (6) Å30.30 × 0.21 × 0.08 mm
Z = 4
Bruker SMART CCD diffractometer4717 independent reflections
Radiation source: fine-focus sealed tube2622 reflections with I > 2σ(I)
graphiteRint = 0.051
φ and ω scansθmax = 27.8°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −17→17
Tmin = 0.979, Tmax = 0.993k = −26→26
23826 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.07P)2 + 0.1292P] where P = (Fo2 + 2Fc2)/3
4717 reflections(Δ/σ)max < 0.001
258 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.89926 (11)0.04791 (7)0.2730 (2)0.0489 (4)
H1D0.95570.02970.30940.059*
O30.73311 (9)0.00819 (7)0.59614 (18)0.0606 (4)
O20.89663 (10)−0.01469 (7)0.60113 (19)0.0637 (4)
C30.82077 (14)0.01047 (9)0.5289 (3)0.0489 (5)
N41.09462 (11)0.18926 (7)−0.46225 (19)0.0497 (4)
N20.94408 (12)0.13164 (8)−0.1322 (2)0.0525 (4)
C111.02102 (14)0.14408 (9)−0.2378 (2)0.0475 (4)
C100.95909 (14)0.09456 (9)0.0064 (2)0.0493 (5)
H10A1.02110.07440.03410.059*
C40.81529 (13)0.04502 (9)0.3599 (3)0.0498 (5)
C131.00552 (14)0.17709 (8)−0.3956 (2)0.0477 (4)
C50.88044 (13)0.08391 (9)0.1198 (2)0.0491 (5)
O11.17701 (10)0.11051 (8)−0.06507 (18)0.0692 (4)
N31.16917 (11)0.15719 (8)−0.3468 (2)0.0530 (4)
C121.12710 (15)0.13275 (9)−0.1985 (2)0.0514 (5)
C211.30141 (16)0.23522 (10)−0.4062 (3)0.0590 (5)
H211.25400.2680−0.43770.071*
C161.27191 (14)0.17312 (10)−0.3532 (2)0.0525 (5)
C60.78108 (14)0.10470 (10)0.1085 (3)0.0548 (5)
C20.73181 (15)−0.02886 (11)0.7614 (3)0.0643 (6)
H2A0.7713−0.00590.85770.077*
H2B0.7604−0.07260.74890.077*
C70.74006 (13)0.08006 (10)0.2585 (3)0.0568 (5)
C171.34292 (17)0.12484 (11)−0.3051 (3)0.0674 (6)
H171.32330.0831−0.26930.081*
C140.90956 (15)0.20130 (10)−0.4891 (3)0.0620 (5)
H14A0.89510.1776−0.59920.093*
H14B0.91490.2479−0.51340.093*
H14C0.85660.1941−0.41530.093*
C80.72684 (15)0.14606 (12)−0.0377 (3)0.0767 (7)
H8A0.65590.1425−0.03280.115*
H8B0.74330.1304−0.15120.115*
H8C0.74680.1916−0.02240.115*
C151.10435 (16)0.18288 (10)−0.6526 (2)0.0603 (5)
H15A1.09970.1369−0.68610.091*
H15B1.16810.2002−0.67720.091*
H15C1.05170.2074−0.71950.091*
C201.40162 (18)0.24783 (13)−0.4116 (3)0.0772 (7)
H201.42170.2893−0.44850.093*
C90.63467 (16)0.09116 (14)0.3014 (4)0.0903 (9)
H9A0.62860.13530.34690.135*
H9B0.61890.05960.38950.135*
H9C0.58910.08570.19540.135*
C191.47261 (19)0.20031 (16)−0.3638 (4)0.0883 (8)
H191.54030.2095−0.36730.106*
C181.44268 (19)0.13905 (14)−0.3105 (4)0.0855 (8)
H181.49050.1067−0.27770.103*
C10.62731 (18)−0.03477 (16)0.8013 (4)0.1050 (10)
H1A0.60350.00790.83480.157*
H1B0.6237−0.06550.89760.157*
H1C0.5865−0.05050.69760.157*
U11U22U33U12U13U23
N10.0397 (8)0.0527 (9)0.0546 (10)−0.0008 (7)0.0066 (7)0.0072 (7)
O30.0435 (7)0.0775 (9)0.0624 (9)0.0040 (6)0.0131 (6)0.0224 (7)
O20.0434 (8)0.0757 (10)0.0724 (10)0.0066 (7)0.0081 (7)0.0203 (7)
C30.0405 (10)0.0491 (11)0.0578 (12)−0.0047 (8)0.0087 (9)0.0025 (9)
N40.0550 (10)0.0537 (9)0.0399 (9)0.0003 (7)0.0025 (7)0.0056 (7)
N20.0564 (10)0.0528 (9)0.0482 (9)−0.0069 (7)0.0058 (8)0.0030 (8)
C110.0518 (11)0.0460 (10)0.0450 (11)−0.0055 (8)0.0061 (8)0.0008 (8)
C100.0479 (11)0.0499 (11)0.0500 (11)−0.0051 (8)0.0048 (9)−0.0004 (9)
C40.0383 (10)0.0536 (11)0.0578 (12)−0.0046 (8)0.0065 (8)0.0067 (9)
C130.0542 (11)0.0418 (10)0.0463 (11)−0.0030 (8)0.0018 (9)−0.0016 (8)
C50.0484 (11)0.0502 (11)0.0483 (11)−0.0068 (8)0.0028 (8)0.0020 (9)
O10.0629 (9)0.0895 (11)0.0536 (9)0.0007 (8)−0.0006 (7)0.0250 (8)
N30.0522 (10)0.0610 (10)0.0449 (9)0.0004 (8)0.0015 (7)0.0101 (8)
C120.0590 (12)0.0524 (11)0.0425 (11)−0.0035 (9)0.0048 (9)0.0066 (9)
C210.0619 (13)0.0662 (14)0.0510 (12)−0.0007 (10)0.0154 (10)0.0034 (10)
C160.0536 (12)0.0608 (12)0.0435 (10)−0.0006 (9)0.0078 (9)−0.0018 (9)
C60.0438 (11)0.0610 (12)0.0580 (12)−0.0050 (9)−0.0018 (9)0.0093 (10)
C20.0563 (12)0.0795 (15)0.0589 (13)0.0055 (11)0.0142 (10)0.0197 (11)
C70.0402 (10)0.0644 (13)0.0653 (13)−0.0036 (9)0.0033 (9)0.0100 (10)
C170.0686 (15)0.0661 (14)0.0673 (15)0.0066 (11)0.0061 (11)0.0011 (11)
C140.0622 (13)0.0608 (12)0.0610 (13)−0.0004 (10)−0.0020 (10)0.0048 (10)
C80.0532 (13)0.0964 (18)0.0782 (16)−0.0009 (12)−0.0035 (11)0.0289 (14)
C150.0747 (14)0.0643 (13)0.0417 (11)0.0035 (11)0.0049 (10)0.0040 (10)
C200.0709 (16)0.0917 (17)0.0721 (16)−0.0158 (14)0.0214 (12)0.0067 (13)
C90.0450 (13)0.122 (2)0.105 (2)0.0141 (13)0.0165 (13)0.0387 (17)
C190.0566 (15)0.120 (2)0.0905 (19)−0.0054 (16)0.0181 (13)−0.0016 (17)
C180.0608 (16)0.104 (2)0.0924 (19)0.0211 (14)0.0100 (13)0.0017 (16)
C10.0648 (16)0.146 (3)0.108 (2)−0.0029 (16)0.0275 (15)0.0547 (19)
N1—C41.364 (2)C6—C81.507 (3)
N1—C51.366 (2)C2—C11.471 (3)
N1—H1D0.8600C2—H2A0.9700
O3—C31.331 (2)C2—H2B0.9700
O3—C21.455 (2)C7—C91.501 (3)
O2—C31.213 (2)C17—C181.374 (3)
C3—C41.448 (3)C17—H170.9300
N4—C131.368 (2)C14—H14A0.9600
N4—N31.411 (2)C14—H14B0.9600
N4—C151.462 (2)C14—H14C0.9600
N2—C101.284 (2)C8—H8A0.9600
N2—C111.393 (2)C8—H8B0.9600
C11—C131.361 (2)C8—H8C0.9600
C11—C121.441 (3)C15—H15A0.9600
C10—C51.444 (3)C15—H15B0.9600
C10—H10A0.9300C15—H15C0.9600
C4—C71.392 (3)C20—C191.371 (3)
C13—C141.483 (3)C20—H200.9300
C5—C61.392 (3)C9—H9A0.9600
O1—C121.233 (2)C9—H9B0.9600
N3—C121.396 (2)C9—H9C0.9600
N3—C161.422 (2)C19—C181.371 (4)
C21—C201.374 (3)C19—H190.9300
C21—C161.384 (3)C18—H180.9300
C21—H210.9300C1—H1A0.9600
C16—C171.383 (3)C1—H1B0.9600
C6—C71.402 (3)C1—H1C0.9600
C4—N1—C5110.02 (15)H2A—C2—H2B108.4
C4—N1—H1D125.0C4—C7—C6107.40 (16)
C5—N1—H1D125.0C4—C7—C9126.99 (18)
C3—O3—C2115.88 (15)C6—C7—C9125.61 (18)
O2—C3—O3123.23 (18)C18—C17—C16119.5 (2)
O2—C3—C4123.89 (17)C18—C17—H17120.3
O3—C3—C4112.88 (16)C16—C17—H17120.3
C13—N4—N3106.31 (14)C13—C14—H14A109.5
C13—N4—C15121.26 (15)C13—C14—H14B109.5
N3—N4—C15115.75 (15)H14A—C14—H14B109.5
C10—N2—C11120.64 (17)C13—C14—H14C109.5
C13—C11—N2122.38 (17)H14A—C14—H14C109.5
C13—C11—C12108.20 (16)H14B—C14—H14C109.5
N2—C11—C12129.10 (16)C6—C8—H8A109.5
N2—C10—C5120.56 (18)C6—C8—H8B109.5
N2—C10—H10A119.7H8A—C8—H8B109.5
C5—C10—H10A119.7C6—C8—H8C109.5
N1—C4—C7107.58 (16)H8A—C8—H8C109.5
N1—C4—C3118.50 (16)H8B—C8—H8C109.5
C7—C4—C3133.90 (17)N4—C15—H15A109.5
C11—C13—N4110.59 (16)N4—C15—H15B109.5
C11—C13—C14128.38 (18)H15A—C15—H15B109.5
N4—C13—C14120.98 (16)N4—C15—H15C109.5
N1—C5—C6107.48 (16)H15A—C15—H15C109.5
N1—C5—C10120.00 (16)H15B—C15—H15C109.5
C6—C5—C10132.51 (18)C21—C20—C19121.2 (2)
C12—N3—N4109.60 (15)C21—C20—H20119.4
C12—N3—C16125.72 (15)C19—C20—H20119.4
N4—N3—C16120.13 (15)C7—C9—H9A109.5
O1—C12—N3123.51 (18)C7—C9—H9B109.5
O1—C12—C11131.60 (17)H9A—C9—H9B109.5
N3—C12—C11104.78 (15)C7—C9—H9C109.5
C20—C21—C16119.1 (2)H9A—C9—H9C109.5
C20—C21—H21120.4H9B—C9—H9C109.5
C16—C21—H21120.4C18—C19—C20119.2 (2)
C17—C16—C21120.1 (2)C18—C19—H19120.4
C17—C16—N3118.44 (18)C20—C19—H19120.4
C21—C16—N3121.49 (18)C19—C18—C17120.9 (2)
C5—C6—C7107.52 (16)C19—C18—H18119.6
C5—C6—C8126.55 (18)C17—C18—H18119.6
C7—C6—C8125.93 (18)C2—C1—H1A109.5
O3—C2—C1108.44 (17)C2—C1—H1B109.5
O3—C2—H2A110.0H1A—C1—H1B109.5
C1—C2—H2A110.0C2—C1—H1C109.5
O3—C2—H2B110.0H1A—C1—H1C109.5
C1—C2—H2B110.0H1B—C1—H1C109.5
C2—O3—C3—O2−2.1 (3)C16—N3—C12—C11162.58 (17)
C2—O3—C3—C4176.86 (16)C13—C11—C12—O1172.6 (2)
C10—N2—C11—C13172.78 (17)N2—C11—C12—O1−0.9 (3)
C10—N2—C11—C12−14.5 (3)C13—C11—C12—N3−3.6 (2)
C11—N2—C10—C5177.46 (16)N2—C11—C12—N3−177.11 (17)
C5—N1—C4—C70.3 (2)C20—C21—C16—C170.6 (3)
C5—N1—C4—C3−178.24 (16)C20—C21—C16—N3−179.38 (18)
O2—C3—C4—N12.1 (3)C12—N3—C16—C1754.9 (3)
O3—C3—C4—N1−176.84 (16)N4—N3—C16—C17−151.52 (18)
O2—C3—C4—C7−175.9 (2)C12—N3—C16—C21−125.1 (2)
O3—C3—C4—C75.1 (3)N4—N3—C16—C2128.4 (3)
N2—C11—C13—N4173.11 (15)N1—C5—C6—C7−0.3 (2)
C12—C11—C13—N4−0.9 (2)C10—C5—C6—C7−179.24 (19)
N2—C11—C13—C14−4.2 (3)N1—C5—C6—C8179.8 (2)
C12—C11—C13—C14−178.26 (18)C10—C5—C6—C80.8 (3)
N3—N4—C13—C115.04 (19)C3—O3—C2—C1−171.5 (2)
C15—N4—C13—C11140.06 (17)N1—C4—C7—C6−0.5 (2)
N3—N4—C13—C14−177.38 (16)C3—C4—C7—C6177.7 (2)
C15—N4—C13—C14−42.4 (2)N1—C4—C7—C9−179.3 (2)
C4—N1—C5—C60.0 (2)C3—C4—C7—C9−1.1 (4)
C4—N1—C5—C10179.11 (16)C5—C6—C7—C40.5 (2)
N2—C10—C5—N1−175.74 (16)C8—C6—C7—C4−179.6 (2)
N2—C10—C5—C63.1 (3)C5—C6—C7—C9179.3 (2)
C13—N4—N3—C12−7.40 (19)C8—C6—C7—C9−0.7 (4)
C15—N4—N3—C12−145.27 (16)C21—C16—C17—C18−0.1 (3)
C13—N4—N3—C16−164.82 (15)N3—C16—C17—C18179.88 (19)
C15—N4—N3—C1657.3 (2)C16—C21—C20—C19−0.7 (3)
N4—N3—C12—O1−169.83 (18)C21—C20—C19—C180.4 (4)
C16—N3—C12—O1−14.0 (3)C20—C19—C18—C170.1 (4)
N4—N3—C12—C116.73 (19)C16—C17—C18—C19−0.3 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1D···O2i0.862.052.880 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1D⋯O2i0.862.052.880 (2)163

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and DNA-binding properties of four Zn(II) complexes with bis(pyrrol-2-yl-methyleneamine) ligands.

Authors:  Yuan Wang; Zheng-Yin Yang; Zhong-Ning Chen
Journal:  Bioorg Med Chem Lett       Date:  2007-10-30       Impact factor: 2.823

3.  Ethyl 5-formyl-3,4-dimethyl-1H-pyrrole-2-carboxyl-ate.

Authors:  Wei-Na Wu; Yuan Wang; Qiu-Fen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20
  3 in total
  1 in total

1.  Ethyl 3,4-dimethyl-5-[(E)-(phenyl-imino)-meth-yl]-1H-pyrrole-2-carboxyl-ate.

Authors:  Wei-Na Wu; Lei Yang; Xiao-Xia Li; Bao-Feng Qin; Qiu-Fen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16
  1 in total

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