Literature DB >> 21582853

(E)-1-(2-Thien-yl)-3-(3,4,5-trimethoxy-phen-yl)prop-2-en-1-one.

Thitipone Suwunwong, Suchada Chantrapromma, Paradorn Pakdeevanich, Hoong-Kun Fun.   

Abstract

The mol-ecule of the title heteroaryl chalcone, C(16)H(16)O(4)S, which consists of substituted thio-phene and benzene rings bridged by the prop-2-en-1-one group, is slightly twisted. The dihedral angle between the thio-phene and 3,4,5-trimethoxy-phenyl rings is 12.18 (4)°. The three meth-oxy groups have two different conformations; two meth-oxy groups are coplanar [C-O-C-C torsion angles = -1.38 (12) and 0.47 (12)°] whereas the third is (-)-synclinal with the benzene ring. In the crystal structure, adjacent mol-ecules are linked in a face-to-side manner into chains along the c axis by weak C-H⋯O(enone) inter-actions. These chains are stacked along the b axis by weak C-H⋯O(meth-oxy) inter-actions.

Entities:  

Year:  2009        PMID: 21582853      PMCID: PMC2969210          DOI: 10.1107/S1600536809021850

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Chantrapromma et al. (2009 ▶); Patil et al. (2006 ▶; 2007 ▶); Suwunwong et al. (2009a ▶,b ▶). For background to and applications of chalcones, see: Dimmock et al. (1999 ▶); Go et al. (2005 ▶); Jung et al. (2008 ▶); Ni et al. (2004 ▶); Patil et al. (2007 ▶); Patil & Dharmaprakash (2008 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer, (1986 ▶).

Experimental

Crystal data

C16H16O4S M = 304.36 Orthorhombic, a = 25.3323 (8) Å b = 3.9816 (1) Å c = 14.0163 (4) Å V = 1413.73 (7) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 100 K 0.58 × 0.31 × 0.21 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.872, T max = 0.951 56940 measured reflections 7416 independent reflections 7177 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.099 S = 1.10 7416 reflections 193 parameters 1 restraint H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.54 e Å−3 Absolute structure: Flack (1983 ▶), 3588 Friedel pairs Flack parameter: 0.04 (4) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809021850/sj2627sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021850/sj2627Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16O4SDx = 1.430 Mg m3
Mr = 304.36Melting point = 420–421 K
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 7416 reflections
a = 25.3323 (8) Åθ = 2.2–37.5°
b = 3.9816 (1) ŵ = 0.24 mm1
c = 14.0163 (4) ÅT = 100 K
V = 1413.73 (7) Å3Block, pale yellow
Z = 40.58 × 0.31 × 0.21 mm
F(000) = 640
Bruker APEXII CCD area-detector diffractometer7416 independent reflections
Radiation source: sealed tube7177 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 37.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −43→43
Tmin = 0.872, Tmax = 0.951k = −6→6
56940 measured reflectionsl = −23→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0672P)2 + 0.1429P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
7416 reflectionsΔρmax = 0.66 e Å3
193 parametersΔρmin = −0.54 e Å3
1 restraintAbsolute structure: Flack (1983), 3588 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (4)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.249987 (8)0.46794 (6)0.47989 (2)0.01892 (5)
O10.25370 (3)0.4617 (3)0.68801 (7)0.02618 (18)
O20.40965 (3)0.51095 (18)1.13056 (5)0.01662 (11)
O30.49824 (2)0.83176 (19)1.08244 (5)0.01615 (10)
O40.51691 (3)1.02802 (19)0.90201 (5)0.01753 (11)
C10.28105 (4)0.5872 (3)0.37853 (6)0.02121 (16)
H1A0.26790.54650.31770.025*
C20.32771 (4)0.7503 (3)0.39595 (7)0.02174 (16)
H2A0.34930.83310.34770.026*
C30.34021 (3)0.7815 (2)0.49530 (5)0.01517 (12)
H3A0.37020.88440.52000.018*
C40.29890 (3)0.6283 (2)0.55061 (6)0.01440 (12)
C50.29401 (3)0.5880 (2)0.65390 (6)0.01617 (13)
C60.33914 (3)0.6919 (2)0.71401 (6)0.01613 (13)
H6A0.36620.82020.68780.019*
C70.34122 (3)0.6018 (2)0.80632 (6)0.01549 (13)
H7A0.31220.48360.82940.019*
C80.38341 (3)0.6666 (2)0.87483 (5)0.01329 (11)
C90.37539 (3)0.5559 (2)0.96864 (6)0.01372 (11)
H9A0.34410.44790.98490.016*
C100.41415 (3)0.6073 (2)1.03751 (5)0.01261 (11)
C110.46146 (3)0.7683 (2)1.01284 (5)0.01296 (11)
C120.46951 (3)0.8767 (2)0.91840 (5)0.01333 (12)
C130.43078 (3)0.8266 (2)0.84955 (6)0.01399 (12)
H13A0.43620.89850.78720.017*
C140.36101 (4)0.3538 (2)1.15750 (6)0.01816 (14)
H14A0.36190.30011.22430.027*
H14B0.35630.15161.12120.027*
H14C0.33220.50431.14520.027*
C150.54355 (3)0.6178 (2)1.07845 (8)0.02027 (15)
H15A0.56810.68171.12740.030*
H15B0.56010.63911.01720.030*
H15C0.53290.38901.08810.030*
C160.52661 (4)1.1439 (3)0.80695 (6)0.01969 (15)
H16A0.55981.25970.80490.030*
H16B0.49891.29410.78800.030*
H16C0.52760.95550.76420.030*
U11U22U33U12U13U23
S10.01673 (9)0.02390 (10)0.01613 (9)−0.00032 (6)−0.00311 (6)0.00034 (9)
O10.0181 (3)0.0441 (5)0.0164 (3)−0.0106 (3)−0.0019 (2)0.0083 (3)
O20.0169 (2)0.0225 (3)0.0104 (2)−0.0028 (2)0.00034 (19)0.00240 (19)
O30.0152 (2)0.0203 (3)0.0130 (2)−0.00066 (19)−0.00317 (18)−0.0026 (2)
O40.0148 (2)0.0241 (3)0.0136 (2)−0.0053 (2)0.0005 (2)0.0021 (2)
C10.0243 (4)0.0266 (4)0.0127 (3)0.0053 (3)−0.0033 (3)−0.0005 (3)
C20.0220 (4)0.0247 (4)0.0185 (3)0.0027 (3)0.0059 (3)0.0038 (3)
C30.0144 (3)0.0203 (3)0.0108 (3)0.0051 (2)−0.0017 (2)−0.0003 (2)
C40.0135 (3)0.0168 (3)0.0129 (3)0.0002 (2)−0.0012 (2)0.0020 (2)
C50.0142 (3)0.0215 (3)0.0128 (3)−0.0013 (3)−0.0015 (2)0.0025 (2)
C60.0147 (3)0.0199 (3)0.0138 (3)−0.0014 (2)−0.0017 (2)0.0012 (2)
C70.0134 (3)0.0206 (3)0.0125 (3)−0.0006 (2)−0.0014 (2)0.0006 (2)
C80.0123 (3)0.0168 (3)0.0108 (2)0.0004 (2)−0.0006 (2)−0.0002 (2)
C90.0125 (3)0.0169 (3)0.0117 (3)−0.0006 (2)−0.0001 (2)0.0002 (2)
C100.0128 (3)0.0149 (3)0.0101 (3)0.0006 (2)0.0003 (2)0.0001 (2)
C110.0130 (3)0.0153 (3)0.0105 (2)−0.0002 (2)−0.0003 (2)−0.0003 (2)
C120.0127 (3)0.0157 (3)0.0116 (3)−0.0003 (2)0.0010 (2)−0.0007 (2)
C130.0129 (3)0.0178 (3)0.0113 (3)0.0000 (2)0.0002 (2)0.0001 (2)
C140.0186 (3)0.0206 (4)0.0152 (3)−0.0016 (3)0.0039 (2)0.0030 (3)
C150.0174 (3)0.0188 (3)0.0246 (4)0.0001 (3)−0.0066 (3)−0.0001 (3)
C160.0171 (3)0.0252 (4)0.0168 (3)−0.0013 (3)0.0032 (3)0.0051 (3)
S1—C11.6921 (11)C7—C81.4598 (11)
S1—C41.7104 (8)C7—H7A0.9300
O1—C51.2347 (11)C8—C91.4015 (11)
O2—C101.3642 (10)C8—C131.4040 (11)
O2—C141.4325 (11)C9—C101.3920 (11)
O3—C111.3725 (10)C9—H9A0.9300
O3—C151.4304 (12)C10—C111.4023 (11)
O4—C121.3630 (10)C11—C121.4073 (11)
O4—C161.4312 (11)C12—C131.3905 (11)
C1—C21.3704 (15)C13—H13A0.9300
C1—H1A0.9300C14—H14A0.9600
C2—C31.4335 (13)C14—H14B0.9600
C2—H2A0.9300C14—H14C0.9600
C3—C41.4382 (12)C15—H15A0.9600
C3—H3A0.9300C15—H15B0.9600
C4—C51.4619 (12)C15—H15C0.9600
C5—C61.4792 (12)C16—H16A0.9600
C6—C71.3437 (11)C16—H16B0.9600
C6—H6A0.9300C16—H16C0.9600
C1—S1—C492.57 (5)O2—C10—C9124.24 (7)
C10—O2—C14116.54 (7)O2—C10—C11115.83 (7)
C11—O3—C15114.04 (7)C9—C10—C11119.93 (7)
C12—O4—C16116.78 (7)O3—C11—C10119.29 (7)
C2—C1—S1112.61 (7)O3—C11—C12120.91 (7)
C2—C1—H1A123.7C10—C11—C12119.73 (7)
S1—C1—H1A123.7O4—C12—C13124.62 (7)
C1—C2—C3113.88 (8)O4—C12—C11114.94 (7)
C1—C2—H2A123.1C13—C12—C11120.43 (7)
C3—C2—H2A123.1C12—C13—C8119.54 (7)
C2—C3—C4109.02 (8)C12—C13—H13A120.2
C2—C3—H3A125.5C8—C13—H13A120.2
C4—C3—H3A125.5O2—C14—H14A109.5
C3—C4—C5129.94 (7)O2—C14—H14B109.5
C3—C4—S1111.91 (6)H14A—C14—H14B109.5
C5—C4—S1118.14 (6)O2—C14—H14C109.5
O1—C5—C4119.89 (8)H14A—C14—H14C109.5
O1—C5—C6122.19 (8)H14B—C14—H14C109.5
C4—C5—C6117.90 (7)O3—C15—H15A109.5
C7—C6—C5120.26 (8)O3—C15—H15B109.5
C7—C6—H6A119.9H15A—C15—H15B109.5
C5—C6—H6A119.9O3—C15—H15C109.5
C6—C7—C8127.94 (8)H15A—C15—H15C109.5
C6—C7—H7A116.0H15B—C15—H15C109.5
C8—C7—H7A116.0O4—C16—H16A109.5
C9—C8—C13120.22 (7)O4—C16—H16B109.5
C9—C8—C7117.10 (7)H16A—C16—H16B109.5
C13—C8—C7122.68 (7)O4—C16—H16C109.5
C10—C9—C8120.15 (7)H16A—C16—H16C109.5
C10—C9—H9A119.9H16B—C16—H16C109.5
C8—C9—H9A119.9
C4—S1—C1—C2−0.66 (8)C14—O2—C10—C11178.47 (7)
S1—C1—C2—C30.53 (11)C8—C9—C10—O2179.44 (8)
C1—C2—C3—C4−0.06 (11)C8—C9—C10—C11−0.40 (12)
C2—C3—C4—C5178.30 (9)C15—O3—C11—C10106.33 (9)
C2—C3—C4—S1−0.43 (9)C15—O3—C11—C12−76.76 (10)
C1—S1—C4—C30.62 (7)O2—C10—C11—O3−2.98 (11)
C1—S1—C4—C5−178.27 (7)C9—C10—C11—O3176.88 (8)
C3—C4—C5—O1176.49 (10)O2—C10—C11—C12−179.93 (7)
S1—C4—C5—O1−4.85 (13)C9—C10—C11—C12−0.07 (12)
C3—C4—C5—C6−5.52 (14)C16—O4—C12—C130.47 (12)
S1—C4—C5—C6173.14 (7)C16—O4—C12—C11−179.67 (8)
O1—C5—C6—C710.94 (15)O3—C11—C12—O43.51 (11)
C4—C5—C6—C7−166.99 (8)C10—C11—C12—O4−179.59 (7)
C5—C6—C7—C8176.81 (8)O3—C11—C12—C13−176.63 (8)
C6—C7—C8—C9177.83 (9)C10—C11—C12—C130.27 (12)
C6—C7—C8—C13−3.34 (14)O4—C12—C13—C8179.86 (8)
C13—C8—C9—C100.69 (12)C11—C12—C13—C80.01 (12)
C7—C8—C9—C10179.55 (8)C9—C8—C13—C12−0.49 (12)
C14—O2—C10—C9−1.38 (12)C7—C8—C13—C12−179.29 (8)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O1i0.932.523.1827 (14)129
C7—H7A···O10.932.482.8243 (12)102
C15—H15B···O40.962.493.0396 (13)116
C15—H15C···O3ii0.962.393.3340 (11)169
C7—H7A···O10.932.482.8243 (12)102
C15—H15B···O40.962.493.0396 (13)116
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O1i0.932.523.1827 (14)129
C15—H15C⋯O3ii0.962.393.3340 (11)169

Symmetry codes: (i) ; (ii) .

  7 in total

Review 1.  Bioactivities of chalcones.

Authors:  J R Dimmock; D W Elias; M A Beazely; N M Kandepu
Journal:  Curr Med Chem       Date:  1999-12       Impact factor: 4.530

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Chalcones: an update on cytotoxic and chemoprotective properties.

Authors:  M L Go; X Wu; X L Liu
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

4.  (E)-1-(4-Bromo-phen-yl)-3-(2,4,6-trimethoxy-phen-yl)prop-2-en-1-one.

Authors:  Suchada Chantrapromma; Thitipone Suwunwong; Chatchanok Karalai; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

5.  (E)-1-(4-Bromo-phen-yl)-3-(3,4,5-trimethoxy-phen-yl)prop-2-en-1-one.

Authors:  Thitipone Suwunwong; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-13

6.  (E)-3-(Anthracen-9-yl)-1-(4-bromo-phen-yl)prop-2-en-1-one.

Authors:  Thitipone Suwunwong; Suchada Chantrapromma; Chatchanok Karalai; Paradorn Pakdeevanich; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-31

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  12 in total

1.  1-(4-Amino-phen-yl)-3-[2-(trifluoro-meth-yl)phen-yl]prop-2-en-1-one.

Authors:  Jing Peng; Huifen Xu; Zhe Li; Yuyan Zhang; Jianzhang Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-24

2.  1-Phenyl-3-(2,4,6-trimethoxy-phen-yl)prop-2-en-1-one.

Authors:  Jianzhang Wu; Li Zhang; Jing Wang; Shulin Yang; Xiaokun Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-23

3.  (2E)-1-(4-Amino-phen-yl)-3-(2-thien-yl)prop-2-en-1-one ethanol hemisolvate.

Authors:  Hoong-Kun Fun; Thawanrat Kobkeatthawin; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

4.  (E)-1-(4-Chloro-phen-yl)-3-[4-(diethyl-amino)phen-yl]prop-2-en-1-one.

Authors:  Thawanrat Kobkeatthawin; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

5.  (E)-1-(2-Fur-yl)-3-(2,4,6-trimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Thitipone Suwunwong; Suchada Chantrapromma; Chatchanok Karalai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-15

6.  (Z)-3-(9-Anthr-yl)-1-(2-thien-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Thitipone Suwunwong; Nawong Boonnak; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15

7.  (E)-1-(2-Fur-yl)-3-(3,4,5-trimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Thitipone Suwunwong; Suchada Chantrapromma; Chatchanok Karalai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06

8.  (E)-1-(4-Amino-phen-yl)-3-(2,4,5-trimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Thawanrat Kobkeatthawin; Pumsak Ruanwas; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10

9.  (E)-1-(Thio-phen-2-yl)-3-(2,4,6-tri-meth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Thitipone Suwunwong; Teerasak Anantapong; Chatchanok Karalai; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

10.  (E)-1-(Pyridin-2-yl)-3-(3,4,5-trimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Thitipone Suwunwong; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
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