| Literature DB >> 21581882 |
Mohamed Tebaa, Noureddine Mazoir, Celia M Maya, Bouhmaida Nouzha, Ahmed Benharref, Moha Berraho.
Abstract
The title heterocyclic compound, C(17)H(23)N(3)O(2)S, was synthesized from 4-(4-methyl-cyclo-hex-3-en-yl)pent-3-en-2-one, which was isolated from Cedrus atlantica essential oil. The thia-diazole ring adopts a flattened envelope conformation, with the flap sp(3)-hybridized C atom lying 0.259 (1) Å out of the plane of the other four atoms. The screw-related mol-ecules are linked into chains along the b axis by inter-molecular N-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21581882 PMCID: PMC2968392 DOI: 10.1107/S1600536809000191
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H23N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 31976 reflections |
| θ = 2.2–36.5° | |
| µ = 0.20 mm−1 | |
| β = 90.442 (10)° | Prism, colourless |
| 0.5 × 0.4 × 0.3 mm | |
| Bruker X8 APEX CCD area-detector diffractometer | 7182 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 36.8°, θmin = 2.2° |
| φ and ω scans | |
| 52162 measured reflections | |
| 8286 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 8286 reflections | (Δ/σ)max = 0.002 |
| 221 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| C1' | −0.18648 (9) | 0.69929 (8) | 0.22865 (5) | 0.03405 (16) | |
| H1' | −0.2631 | 0.7423 | 0.2493 | 0.041* | |
| C2' | −0.12028 (8) | 0.74007 (7) | 0.15872 (5) | 0.02883 (13) | |
| H2' | −0.1553 | 0.8087 | 0.1329 | 0.035* | |
| C2 | 0.40705 (7) | 0.72005 (6) | 0.13520 (4) | 0.02074 (10) | |
| C3' | −0.00246 (7) | 0.68003 (6) | 0.12659 (4) | 0.02299 (11) | |
| C3 | 0.58917 (7) | 0.58558 (7) | 0.08145 (4) | 0.02531 (12) | |
| C4 | 0.67040 (8) | 0.47195 (8) | 0.09881 (5) | 0.03082 (14) | |
| H40 | 0.6397 | 0.4094 | 0.0625 | 0.046* | |
| H41 | 0.6534 | 0.4471 | 0.1533 | 0.046* | |
| H42 | 0.7702 | 0.4865 | 0.0917 | 0.046* | |
| C4' | 0.04426 (8) | 0.57608 (7) | 0.16569 (5) | 0.02818 (13) | |
| H4' | 0.1221 | 0.5340 | 0.1458 | 0.034* | |
| C5 | 0.24444 (7) | 0.89236 (6) | 0.09425 (4) | 0.02261 (11) | |
| C5' | −0.02462 (10) | 0.53384 (8) | 0.23496 (5) | 0.03469 (17) | |
| H5' | 0.0073 | 0.4631 | 0.2595 | 0.042* | |
| C6 | 0.10835 (8) | 0.85717 (6) | 0.04946 (4) | 0.02444 (12) | |
| H61 | 0.1172 | 0.8834 | −0.0060 | 0.029* | |
| H62 | 0.0302 | 0.9021 | 0.0728 | 0.029* | |
| C6' | −0.13955 (10) | 0.59549 (9) | 0.26777 (5) | 0.03553 (17) | |
| C7' | −0.21196 (14) | 0.55330 (13) | 0.34392 (6) | 0.0557 (3) | |
| H70' | −0.1661 | 0.4813 | 0.3634 | 0.083* | |
| H71' | −0.3103 | 0.5363 | 0.3325 | 0.083* | |
| H72' | −0.2054 | 0.6155 | 0.3841 | 0.083* | |
| C7 | 0.06784 (7) | 0.72237 (6) | 0.04914 (4) | 0.02407 (11) | |
| C8 | −0.02971 (10) | 0.69513 (9) | −0.02232 (5) | 0.03593 (17) | |
| H80 | 0.0164 | 0.7187 | −0.0713 | 0.054* | |
| H81 | −0.1169 | 0.7395 | −0.0168 | 0.054* | |
| H82 | −0.0501 | 0.6100 | −0.0239 | 0.054* | |
| C9 | 0.27064 (10) | 1.02844 (7) | 0.08864 (5) | 0.03188 (15) | |
| H90 | 0.3533 | 1.0493 | 0.1200 | 0.048* | |
| H91 | 0.1895 | 1.0711 | 0.1090 | 0.048* | |
| H92 | 0.2855 | 1.0505 | 0.0334 | 0.048* | |
| C41 | 0.15568 (7) | 0.88983 (6) | 0.23768 (4) | 0.02220 (11) | |
| C42 | 0.16402 (9) | 0.82781 (7) | 0.31792 (4) | 0.02797 (13) | |
| H420 | 0.1094 | 0.7544 | 0.3161 | 0.042* | |
| H421 | 0.1265 | 0.8802 | 0.3587 | 0.042* | |
| H422 | 0.2615 | 0.8091 | 0.3304 | 0.042* | |
| N1 | 0.49426 (6) | 0.61997 (5) | 0.14026 (3) | 0.02274 (10) | |
| N3 | 0.32596 (6) | 0.74595 (5) | 0.19539 (3) | 0.02162 (10) | |
| N4 | 0.24397 (6) | 0.84788 (5) | 0.17882 (3) | 0.02167 (10) | |
| O1 | 0.60479 (7) | 0.64374 (7) | 0.01970 (4) | 0.03731 (14) | |
| O2 | 0.07229 (6) | 0.97409 (5) | 0.22442 (3) | 0.02734 (10) | |
| S1 | 0.400452 (18) | 0.813333 (16) | 0.050251 (10) | 0.02473 (5) | |
| H4 | 0.4838 (13) | 0.5774 (12) | 0.1853 (8) | 0.036 (3)* | |
| H7 | 0.1540 (12) | 0.6750 (10) | 0.0411 (7) | 0.028 (3)* |
| C1' | 0.0346 (4) | 0.0368 (4) | 0.0309 (3) | −0.0069 (3) | 0.0063 (3) | −0.0080 (3) |
| C2' | 0.0302 (3) | 0.0267 (3) | 0.0297 (3) | 0.0019 (2) | 0.0030 (2) | −0.0024 (2) |
| C2 | 0.0225 (2) | 0.0212 (2) | 0.0185 (2) | −0.00085 (19) | −0.00014 (18) | 0.00030 (19) |
| C3' | 0.0255 (3) | 0.0214 (3) | 0.0220 (3) | 0.0002 (2) | −0.0027 (2) | −0.00210 (19) |
| C3 | 0.0203 (2) | 0.0334 (3) | 0.0222 (3) | 0.0008 (2) | 0.00024 (19) | −0.0032 (2) |
| C4 | 0.0255 (3) | 0.0331 (3) | 0.0338 (3) | 0.0052 (2) | −0.0005 (2) | −0.0081 (3) |
| C4' | 0.0296 (3) | 0.0246 (3) | 0.0303 (3) | −0.0003 (2) | −0.0072 (2) | 0.0011 (2) |
| C5 | 0.0293 (3) | 0.0197 (2) | 0.0188 (2) | 0.0009 (2) | −0.0005 (2) | 0.00177 (19) |
| C5' | 0.0396 (4) | 0.0325 (4) | 0.0318 (3) | −0.0098 (3) | −0.0116 (3) | 0.0077 (3) |
| C6 | 0.0289 (3) | 0.0245 (3) | 0.0199 (2) | 0.0025 (2) | −0.0023 (2) | 0.0024 (2) |
| C6' | 0.0407 (4) | 0.0420 (4) | 0.0238 (3) | −0.0185 (3) | −0.0029 (3) | −0.0004 (3) |
| C7' | 0.0633 (7) | 0.0724 (8) | 0.0313 (4) | −0.0341 (6) | 0.0034 (4) | 0.0054 (5) |
| C7 | 0.0264 (3) | 0.0251 (3) | 0.0207 (2) | 0.0018 (2) | −0.0016 (2) | −0.0032 (2) |
| C8 | 0.0402 (4) | 0.0437 (4) | 0.0238 (3) | −0.0051 (3) | −0.0066 (3) | −0.0053 (3) |
| C9 | 0.0445 (4) | 0.0202 (3) | 0.0310 (3) | −0.0016 (3) | −0.0006 (3) | 0.0036 (2) |
| C41 | 0.0276 (3) | 0.0205 (2) | 0.0185 (2) | 0.0008 (2) | −0.00094 (19) | −0.00301 (19) |
| C42 | 0.0367 (3) | 0.0281 (3) | 0.0191 (3) | 0.0049 (3) | 0.0014 (2) | 0.0006 (2) |
| N1 | 0.0240 (2) | 0.0233 (2) | 0.0209 (2) | 0.00241 (18) | 0.00268 (17) | 0.00121 (18) |
| N3 | 0.0262 (2) | 0.0202 (2) | 0.0184 (2) | 0.00288 (18) | 0.00029 (17) | 0.00064 (17) |
| N4 | 0.0281 (2) | 0.0199 (2) | 0.0171 (2) | 0.00304 (18) | −0.00031 (17) | 0.00020 (16) |
| O1 | 0.0321 (3) | 0.0550 (4) | 0.0249 (2) | 0.0069 (3) | 0.0068 (2) | 0.0066 (2) |
| O2 | 0.0344 (3) | 0.0233 (2) | 0.0244 (2) | 0.00714 (18) | −0.00082 (18) | −0.00255 (17) |
| S1 | 0.02737 (8) | 0.02713 (9) | 0.01972 (8) | 0.00035 (5) | 0.00253 (5) | 0.00433 (5) |
| C1'—C6' | 1.3886 (14) | C6—C7 | 1.5375 (10) |
| C1'—C2' | 1.3963 (12) | C6—H61 | 0.97 |
| C1'—H1' | 0.93 | C6—H62 | 0.97 |
| C2'—C3' | 1.4001 (10) | C6'—C7' | 1.5142 (13) |
| C2'—H2' | 0.93 | C7'—H70' | 0.96 |
| C2—N3 | 1.2936 (8) | C7'—H71' | 0.96 |
| C2—N1 | 1.3788 (9) | C7'—H72' | 0.96 |
| C2—S1 | 1.7478 (6) | C7—C8 | 1.5240 (10) |
| C3'—C4' | 1.3891 (10) | C7—H7 | 0.974 (11) |
| C3'—C7 | 1.5239 (10) | C8—H80 | 0.96 |
| C3—O1 | 1.2199 (9) | C8—H81 | 0.96 |
| C3—N1 | 1.3810 (9) | C8—H82 | 0.96 |
| C3—C4 | 1.4966 (11) | C9—H90 | 0.96 |
| C4—H40 | 0.96 | C9—H91 | 0.96 |
| C4—H41 | 0.96 | C9—H92 | 0.96 |
| C4—H42 | 0.96 | C41—O2 | 1.2357 (8) |
| C4'—C5' | 1.4040 (12) | C41—N4 | 1.3679 (8) |
| C4'—H4' | 0.93 | C41—C42 | 1.4998 (10) |
| C5—N4 | 1.4878 (8) | C42—H420 | 0.96 |
| C5—C6 | 1.5250 (10) | C42—H421 | 0.96 |
| C5—C9 | 1.5267 (10) | C42—H422 | 0.96 |
| C5—S1 | 1.8609 (7) | N1—H4 | 0.889 (13) |
| C5'—C6' | 1.3916 (14) | N3—N4 | 1.3911 (8) |
| C5'—H5' | 0.93 | ||
| C6'—C1'—C2' | 120.90 (8) | C6'—C7'—H70' | 109.5 |
| C6'—C1'—H1' | 119.5 | C6'—C7'—H71' | 109.5 |
| C2'—C1'—H1' | 119.5 | H70'—C7'—H71' | 109.5 |
| C1'—C2'—C3' | 121.52 (7) | C6'—C7'—H72' | 109.5 |
| C1'—C2'—H2' | 119.2 | H70'—C7'—H72' | 109.5 |
| C3'—C2'—H2' | 119.2 | H71'—C7'—H72' | 109.5 |
| N3—C2—N1 | 118.94 (6) | C3'—C7—C8 | 109.53 (6) |
| N3—C2—S1 | 118.40 (5) | C3'—C7—C6 | 113.80 (5) |
| N1—C2—S1 | 122.66 (5) | C8—C7—C6 | 109.97 (6) |
| C4'—C3'—C2' | 117.51 (7) | C3'—C7—H7 | 108.5 (7) |
| C4'—C3'—C7 | 120.72 (6) | C8—C7—H7 | 106.4 (7) |
| C2'—C3'—C7 | 121.70 (6) | C6—C7—H7 | 108.3 (7) |
| O1—C3—N1 | 122.14 (7) | C7—C8—H80 | 109.5 |
| O1—C3—C4 | 122.65 (7) | C7—C8—H81 | 109.5 |
| N1—C3—C4 | 115.21 (6) | H80—C8—H81 | 109.5 |
| C3—C4—H40 | 109.5 | C7—C8—H82 | 109.5 |
| C3—C4—H41 | 109.5 | H80—C8—H82 | 109.5 |
| H40—C4—H41 | 109.5 | H81—C8—H82 | 109.5 |
| C3—C4—H42 | 109.5 | C5—C9—H90 | 109.5 |
| H40—C4—H42 | 109.5 | C5—C9—H91 | 109.5 |
| H41—C4—H42 | 109.5 | H90—C9—H91 | 109.5 |
| C3'—C4'—C5' | 120.78 (8) | C5—C9—H92 | 109.5 |
| C3'—C4'—H4' | 119.6 | H90—C9—H92 | 109.5 |
| C5'—C4'—H4' | 119.6 | H91—C9—H92 | 109.5 |
| N4—C5—C6 | 111.56 (5) | O2—C41—N4 | 121.03 (6) |
| N4—C5—C9 | 112.62 (6) | O2—C41—C42 | 122.10 (6) |
| C6—C5—C9 | 110.89 (6) | N4—C41—C42 | 116.87 (6) |
| N4—C5—S1 | 102.92 (4) | C41—C42—H420 | 109.5 |
| C6—C5—S1 | 110.44 (5) | C41—C42—H421 | 109.5 |
| C9—C5—S1 | 108.08 (5) | H420—C42—H421 | 109.5 |
| C6'—C5'—C4' | 121.47 (8) | C41—C42—H422 | 109.5 |
| C6'—C5'—H5' | 119.3 | H420—C42—H422 | 109.5 |
| C4'—C5'—H5' | 119.3 | H421—C42—H422 | 109.5 |
| C5—C6—C7 | 117.10 (5) | C2—N1—C3 | 124.37 (6) |
| C5—C6—H61 | 108.0 | C2—N1—H4 | 113.9 (8) |
| C7—C6—H61 | 108.0 | C3—N1—H4 | 121.7 (8) |
| C5—C6—H62 | 108.0 | C2—N3—N4 | 110.79 (5) |
| C7—C6—H62 | 108.0 | C41—N4—N3 | 118.12 (5) |
| H61—C6—H62 | 107.3 | C41—N4—C5 | 124.65 (5) |
| C1'—C6'—C5' | 117.78 (7) | N3—N4—C5 | 116.65 (5) |
| C1'—C6'—C7' | 120.12 (10) | C2—S1—C5 | 89.03 (3) |
| C5'—C6'—C7' | 122.10 (10) |
| H··· | ||||
| N1—H4···O2i | 0.89 (1) | 1.96 (1) | 2.8391 (7) | 169 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H4⋯O2i | 0.89 (1) | 1.96 (1) | 2.8391 (7) | 169 (1) |
Symmetry code: (i) .