Literature DB >> 21581682

N-[4-Acetyl-5-isobutyl-5-(2-p-tolyl-prop-yl)-4,5-dihydro-1,3,4-thia-diazol-2-yl]acetamide ethyl acetate hemisolvate.

Mohamed Loughzail, Noureddine Mazoir, Celia M Maya, Moha Berraho, Ahmed Benharref, Nouzha Bouhmaida.   

Abstract

The racemic title compound, a new terpenoid, C(20)H(29)N(3)O(2)S·0.5C(4)H(8)O(2), was synthesized from Cedrus Atlantica essential oil. The compound crystallizes with a disordered ethyl acetate solvent mol-ecule. The thia-diazole ring is almost planar, with a maximum deviation from the mean plane of 0.015 (2) Å for the C atom connected to the isobutyl group and has a puckering amplitude of 0.026 (2) Å. The dihedral angle between the benzene and thia-diazole rings is 18.32 (8)°. The crystal packing involves inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581682      PMCID: PMC2967856          DOI: 10.1107/S1600536808039998

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 1,3,4-thia­diazole derivatives and their biological activity, see: Abdou et al. (1991 ▶); Sakthivel et al. (2008 ▶); Tehranchian et al. (2005 ▶); Wang et al. (1999 ▶, 2004 ▶). For preparative methods, see: Beatriz et al., 2002 ▶; Mohammed et al. (2008 ▶); For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H29N3O2S·0.5C4H8O2 M = 419.57 Monoclinic, a = 7.8713 (3) Å b = 12.7587 (5) Å c = 22.9688 (9) Å β = 90.937 (2)° V = 2306.39 (16) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 295 K 0.5 × 0.4 × 0.3 mm

Data collection

Bruker X8 APEX CCD area-detector diffractometer Absorption correction: none 27541 measured reflections 7243 independent reflections 6688 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.143 S = 1.23 7243 reflections 298 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia,1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808039998/fj2168sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808039998/fj2168Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H29N3O2S·0.5C4H8O2F(000) = 904
Mr = 419.57Dx = 1.208 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 13322 reflections
a = 7.8713 (3) Åθ = 2.6–31.5°
b = 12.7587 (5) ŵ = 0.17 mm1
c = 22.9688 (9) ÅT = 295 K
β = 90.937 (2)°Prism, colourless
V = 2306.39 (16) Å30.5 × 0.4 × 0.3 mm
Z = 4
Bruker X8 APEX CCD area-detector diffractometer6688 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.037
graphiteθmax = 32.0°, θmin = 1.8°
φ and ω scansh = −11→11
27541 measured reflectionsk = −16→18
7243 independent reflectionsl = −33→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.23w = 1/[σ2(Fo2) + (0.0435P)2 + 1.5861P] where P = (Fo2 + 2Fc2)/3
7243 reflections(Δ/σ)max = 0.006
298 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C1'0.5624 (2)0.56734 (16)0.09954 (8)0.0284 (4)
H1'0.61300.52140.07360.034*
C20.6060 (2)0.80786 (11)0.33245 (7)0.0160 (3)
C2'0.5345 (2)0.53523 (13)0.15666 (8)0.0231 (3)
H2'0.56710.46810.16800.028*
C30.4619 (2)0.92243 (12)0.40282 (7)0.0189 (3)
C3'0.4581 (2)0.60205 (12)0.19769 (7)0.0198 (3)
C4'0.4129 (2)0.70239 (13)0.17921 (8)0.0261 (4)
H4'0.36360.74880.20520.031*
C40.4186 (2)1.03550 (13)0.41486 (8)0.0247 (3)
H410.39531.07100.37880.037*
H420.51271.06870.43450.037*
H430.32021.03870.43890.037*
C50.6899 (2)0.61643 (11)0.31921 (7)0.0163 (3)
C5'0.4414 (3)0.73375 (16)0.12186 (9)0.0334 (4)
H5'0.41000.80110.11050.040*
C6'0.5158 (3)0.66697 (17)0.08093 (9)0.0316 (4)
C60.5755 (2)0.53023 (11)0.29360 (7)0.0168 (3)
H610.64390.48690.26840.020*
H620.53820.48620.32540.020*
C7'0.5422 (3)0.6998 (2)0.01806 (10)0.0496 (6)
H71'0.44990.6741−0.00580.074*
H72'0.64720.67110.00460.074*
H73'0.54610.77490.01570.074*
C70.4196 (2)0.56528 (12)0.25922 (7)0.0199 (3)
H70.36860.62410.28010.024*
C80.2898 (2)0.47506 (15)0.25783 (9)0.0280 (4)
H810.26460.45440.29690.042*
H820.33630.41650.23720.042*
H830.18740.49800.23840.042*
C90.8420 (2)0.56432 (12)0.34917 (7)0.0203 (3)
H910.79950.50740.37280.024*
H920.91130.53320.31920.024*
C100.9575 (2)0.63119 (15)0.38756 (8)0.0260 (4)
H100.88830.66400.41760.031*
C111.0522 (2)0.71819 (16)0.35485 (11)0.0358 (5)
H1110.97210.76950.34100.054*
H1121.11050.68830.32240.054*
H1131.13300.75100.38070.054*
C121.0842 (3)0.55835 (18)0.41726 (9)0.0389 (5)
H1231.02430.50620.43900.058*
H1211.15630.59800.44320.058*
H1221.15220.52470.38840.058*
C410.8340 (2)0.67172 (12)0.22639 (7)0.0182 (3)
C420.8709 (3)0.75771 (13)0.18334 (8)0.0259 (4)
H4230.77610.80500.18110.039*
H4210.88940.72760.14570.039*
H4220.97070.79530.19580.039*
O10.42441 (18)0.85144 (10)0.43626 (6)0.0281 (3)
O20.88630 (16)0.58120 (9)0.21879 (5)0.0211 (2)
N10.54896 (18)0.90516 (10)0.35115 (6)0.0174 (3)
H10.56860.95850.32940.021*
N30.69220 (17)0.80070 (9)0.28451 (6)0.0169 (3)
N40.74060 (18)0.69617 (9)0.27477 (6)0.0167 (3)
S10.56524 (5)0.69427 (3)0.372883 (17)0.01838 (10)
C1"0.4182 (8)0.3287 (4)0.4750 (2)0.0377 (11)0.50
H13"0.40990.30380.43570.057*0.50
H12"0.31150.31840.49390.057*0.50
H11"0.50550.29060.49560.057*0.50
C2"0.4610 (5)0.4425 (3)0.47503 (16)0.0282 (7)0.50
C3"0.4243 (5)0.6083 (3)0.52319 (18)0.0325 (8)0.50
H32"0.34040.63960.54830.039*0.50
H31"0.40710.63670.48440.039*0.50
C4"0.5952 (7)0.6366 (4)0.5446 (3)0.0398 (11)0.50
H42"0.61420.60660.58250.060*0.50
H43"0.60460.71150.54700.060*0.50
H41"0.67840.61010.51820.060*0.50
O1'0.5439 (5)0.4867 (3)0.43748 (15)0.0456 (8)0.50
O2'0.3987 (4)0.4949 (2)0.52147 (12)0.0326 (6)0.50
U11U22U33U12U13U23
C1'0.0218 (9)0.0388 (10)0.0247 (9)0.0006 (7)−0.0002 (7)0.0008 (7)
C20.0157 (7)0.0133 (6)0.0190 (7)−0.0004 (5)0.0000 (5)0.0009 (5)
C2'0.0214 (8)0.0239 (7)0.0239 (8)0.0030 (6)−0.0013 (6)0.0002 (6)
C30.0168 (7)0.0191 (7)0.0209 (7)0.0015 (5)0.0023 (6)−0.0008 (5)
C3'0.0163 (7)0.0189 (7)0.0241 (8)0.0009 (5)−0.0036 (6)0.0012 (6)
C4'0.0244 (9)0.0213 (7)0.0324 (9)0.0032 (6)−0.0063 (7)0.0017 (6)
C40.0287 (9)0.0182 (7)0.0274 (9)0.0056 (6)0.0075 (7)−0.0016 (6)
C50.0182 (7)0.0141 (6)0.0167 (7)0.0015 (5)0.0033 (5)0.0001 (5)
C5'0.0314 (10)0.0288 (9)0.0396 (11)−0.0015 (7)−0.0097 (8)0.0128 (8)
C6'0.0237 (9)0.0410 (10)0.0300 (10)−0.0049 (8)−0.0027 (7)0.0118 (8)
C60.0168 (7)0.0140 (6)0.0197 (7)0.0003 (5)0.0030 (6)0.0012 (5)
C7'0.0455 (14)0.0672 (17)0.0360 (12)−0.0024 (12)0.0003 (10)0.0221 (11)
C70.0163 (7)0.0200 (7)0.0236 (8)0.0021 (6)0.0019 (6)−0.0017 (6)
C80.0194 (8)0.0341 (9)0.0304 (9)−0.0049 (7)0.0026 (7)0.0002 (7)
C90.0213 (8)0.0194 (7)0.0201 (7)0.0027 (6)−0.0006 (6)−0.0008 (5)
C100.0198 (8)0.0319 (9)0.0263 (9)0.0054 (7)−0.0023 (7)−0.0096 (7)
C110.0186 (9)0.0334 (9)0.0552 (13)−0.0012 (7)−0.0059 (9)−0.0046 (9)
C120.0381 (12)0.0469 (12)0.0312 (10)0.0131 (9)−0.0140 (9)−0.0090 (9)
C410.0189 (7)0.0165 (6)0.0192 (7)−0.0032 (5)0.0020 (6)−0.0025 (5)
C420.0341 (10)0.0189 (7)0.0252 (8)−0.0031 (6)0.0116 (7)−0.0002 (6)
O10.0367 (8)0.0199 (5)0.0280 (7)0.0030 (5)0.0130 (6)0.0025 (5)
O20.0224 (6)0.0179 (5)0.0231 (6)0.0007 (4)0.0039 (5)−0.0040 (4)
N10.0207 (7)0.0137 (5)0.0179 (6)0.0020 (5)0.0031 (5)0.0003 (4)
N30.0182 (6)0.0126 (5)0.0200 (6)−0.0002 (5)0.0020 (5)−0.0003 (4)
N40.0202 (6)0.0126 (5)0.0175 (6)−0.0004 (5)0.0037 (5)−0.0007 (4)
S10.0229 (2)0.01389 (16)0.01860 (18)0.00144 (13)0.00611 (14)0.00131 (12)
C1"0.057 (3)0.029 (2)0.027 (2)−0.001 (2)0.001 (2)0.0012 (17)
C2"0.0284 (19)0.0352 (18)0.0210 (17)0.0066 (15)−0.0007 (14)0.0079 (14)
C3"0.033 (2)0.0322 (18)0.032 (2)0.0021 (16)−0.0019 (16)0.0023 (15)
C4"0.031 (2)0.039 (3)0.048 (3)0.002 (2)−0.006 (2)0.000 (2)
O1'0.063 (2)0.0384 (16)0.0367 (18)0.0035 (15)0.0194 (16)0.0102 (13)
O2'0.0443 (17)0.0310 (13)0.0225 (13)−0.0037 (12)−0.0010 (12)0.0033 (10)
C1'—C6'1.389 (3)C8—H830.9600
C1'—C2'1.395 (3)C9—C101.519 (2)
C1'—H1'0.9300C9—H910.9700
C2—N31.306 (2)C9—H920.9700
C2—N11.3904 (19)C10—C121.517 (3)
C2—S11.7537 (15)C10—C111.540 (3)
C2'—C3'1.413 (2)C10—H100.9800
C2'—H2'0.9300C11—H1110.9600
C3—O11.227 (2)C11—H1120.9600
C3—N11.398 (2)C11—H1130.9600
C3—C41.509 (2)C12—H1230.9600
C3'—C4'1.393 (2)C12—H1210.9600
C3'—C71.524 (2)C12—H1220.9600
C4'—C5'1.398 (3)C41—O21.2394 (18)
C4'—H4'0.9300C41—N41.378 (2)
C4—H410.9600C41—C421.508 (2)
C4—H420.9600C42—H4230.9600
C4—H430.9600C42—H4210.9600
C5—N41.4998 (19)C42—H4220.9600
C5—C91.524 (2)N1—H10.8600
C5—C61.533 (2)N3—N41.4058 (17)
C5—S11.8732 (15)C1"—C2"1.490 (6)
C5'—C6'1.404 (3)C1"—H13"0.9600
C5'—H5'0.9300C1"—H12"0.9600
C6'—C7'1.521 (3)C1"—H11"0.9600
C6—C71.516 (2)C2"—O1'1.227 (5)
C6—H610.9700C2"—O2'1.358 (5)
C6—H620.9700C3"—O2'1.461 (5)
C7'—H71'0.9600C3"—C4"1.470 (7)
C7'—H72'0.9600C3"—H32"0.9700
C7'—H73'0.9600C3"—H31"0.9700
C7—C81.539 (2)C4"—H42"0.9600
C7—H70.9800C4"—H43"0.9600
C8—H810.9600C4"—H41"0.9600
C8—H820.9600
C6'—C1'—C2'120.88 (18)H81—C8—H82109.5
C6'—C1'—H1'119.6C7—C8—H83109.5
C2'—C1'—H1'119.6H81—C8—H83109.5
N3—C2—N1119.84 (13)H82—C8—H83109.5
N3—C2—S1119.38 (11)C10—C9—C5118.40 (13)
N1—C2—S1120.77 (12)C10—C9—H91107.7
C1'—C2'—C3'121.70 (16)C5—C9—H91107.7
C1'—C2'—H2'119.2C10—C9—H92107.7
C3'—C2'—H2'119.2C5—C9—H92107.7
O1—C3—N1122.80 (14)H91—C9—H92107.1
O1—C3—C4122.25 (15)C12—C10—C9107.44 (15)
N1—C3—C4114.95 (14)C12—C10—C11109.96 (17)
C4'—C3'—C2'117.43 (16)C9—C10—C11114.31 (16)
C4'—C3'—C7120.79 (16)C12—C10—H10108.3
C2'—C3'—C7121.74 (14)C9—C10—H10108.3
C3'—C4'—C5'120.40 (18)C11—C10—H10108.3
C3'—C4'—H4'119.8C10—C11—H111109.5
C5'—C4'—H4'119.8C10—C11—H112109.5
C3—C4—H41109.5H111—C11—H112109.5
C3—C4—H42109.5C10—C11—H113109.5
H41—C4—H42109.5H111—C11—H113109.5
C3—C4—H43109.5H112—C11—H113109.5
H41—C4—H43109.5C10—C12—H123109.5
H42—C4—H43109.5C10—C12—H121109.5
N4—C5—C9112.80 (13)H123—C12—H121109.5
N4—C5—C6112.75 (12)C10—C12—H122109.5
C9—C5—C6108.21 (12)H123—C12—H122109.5
N4—C5—S1103.67 (9)H121—C12—H122109.5
C9—C5—S1110.51 (11)O2—C41—N4120.49 (14)
C6—C5—S1108.79 (11)O2—C41—C42121.15 (15)
C4'—C5'—C6'122.16 (17)N4—C41—C42118.36 (13)
C4'—C5'—H5'118.9C41—C42—H423109.5
C6'—C5'—H5'118.9C41—C42—H421109.5
C1'—C6'—C5'117.43 (18)H423—C42—H421109.5
C1'—C6'—C7'120.3 (2)C41—C42—H422109.5
C5'—C6'—C7'122.3 (2)H423—C42—H422109.5
C7—C6—C5116.99 (12)H421—C42—H422109.5
C7—C6—H61108.1C2—N1—C3124.63 (13)
C5—C6—H61108.1C2—N1—H1117.7
C7—C6—H62108.1C3—N1—H1117.7
C5—C6—H62108.1C2—N3—N4110.27 (12)
H61—C6—H62107.3C41—N4—N3119.50 (12)
C6'—C7'—H71'109.5C41—N4—C5123.13 (12)
C6'—C7'—H72'109.5N3—N4—C5117.36 (12)
H71'—C7'—H72'109.5C2—S1—C589.27 (7)
C6'—C7'—H73'109.5O1'—C2"—O2'121.9 (4)
H71'—C7'—H73'109.5O1'—C2"—C1"124.8 (4)
H72'—C7'—H73'109.5O2'—C2"—C1"113.3 (4)
C6—C7—C3'113.72 (14)O2'—C3"—C4"112.2 (4)
C6—C7—C8108.77 (13)O2'—C3"—H32"109.2
C3'—C7—C8110.65 (14)C4"—C3"—H32"109.2
C6—C7—H7107.8O2'—C3"—H31"109.2
C3'—C7—H7107.8C4"—C3"—H31"109.2
C8—C7—H7107.8H32"—C3"—H31"107.9
C7—C8—H81109.5C2"—O2'—C3"117.3 (3)
C7—C8—H82109.5
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.861.952.812 (2)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.861.952.812 (2)179

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antibacterial activity of 1-[1,2,4-triazol-3-yl] and 1-[1,3,4-thiadiazol-2-yl]-3-methylthio-6,7-dihydrobenzo[c]thiophen-4(5H)ones.

Authors:  Sara Tehranchian; Tahmineh Akbarzadeh; Mohammad Reza Fazeli; Hossein Jamalifar; Abbas Shafiee
Journal:  Bioorg Med Chem Lett       Date:  2005-02-15       Impact factor: 2.823

3.  N-[1-(5-Acetamido-3-acetyl-2-methyl-2,3-dihydro-1,3,4-thia-diazol-2-yl)-2-phenyl-ethyl]acetamide.

Authors:  P Sakthivel; P S Joseph; P Thomas Muthiah; K Sethusankar; S Thennarasu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

4.  (±)-N-[4-Acetyl-5-methyl-5-(4-methyl-cyclo-hex-3-en-yl)-4,5-dihydro-1,3,4-thia-diazol-2-yl]acetamide.

Authors:  Tebbaa Mohammed; Noureddine Mazoir; Jean-Claude Daran; Moha Berraho; Ahmed Benharref
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20
  4 in total
  3 in total

1.  N-[4-Acetyl-5-methyl-5-(2-p-tolyl-prop-yl)-4,5-dihydro-1,3,4-thia-diazol-2-yl]acetamide.

Authors:  Mohamed Tebaa; Noureddine Mazoir; Celia M Maya; Bouhmaida Nouzha; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-10

2.  N-[4-Acetyl-5-(2-methylprop-1-enyl)-5-(2-p-tolyl-prop-yl)-4,5-dihydro-1,3,4-thia-diazol-2-yl]acetamide.

Authors:  Noureddine Mazoir; Lahcen El Ammari; Nouzha Bouhmaida; Slimane Dahaoui; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14

3.  2-Acetyl-3,5,5,9-tetra-methyl-6,7,8,9-tetra-hydro-5H-benzocyclo-hepten-7-one.

Authors:  Ahmed Benharref; Noureddine Mazoir; Essediya Lassaba; Jean-Claude Daran; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-08
  3 in total

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