| Literature DB >> 21581682 |
Mohamed Loughzail, Noureddine Mazoir, Celia M Maya, Moha Berraho, Ahmed Benharref, Nouzha Bouhmaida.
Abstract
The racemic title compound, a new terpenoid, C(20)H(29)N(3)O(2)S·0.5C(4)H(8)O(2), was synthesized from Cedrus Atlantica essential oil. The compound crystallizes with a disordered ethyl acetate solvent mol-ecule. The thia-diazole ring is almost planar, with a maximum deviation from the mean plane of 0.015 (2) Å for the C atom connected to the isobutyl group and has a puckering amplitude of 0.026 (2) Å. The dihedral angle between the benzene and thia-diazole rings is 18.32 (8)°. The crystal packing involves inter-molecular N-H⋯O hydrogen bonds.Entities:
Year: 2008 PMID: 21581682 PMCID: PMC2967856 DOI: 10.1107/S1600536808039998
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H29N3O2S·0.5C4H8O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 13322 reflections |
| θ = 2.6–31.5° | |
| µ = 0.17 mm−1 | |
| β = 90.937 (2)° | Prism, colourless |
| 0.5 × 0.4 × 0.3 mm | |
| Bruker X8 APEX CCD area-detector diffractometer | 6688 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 32.0°, θmin = 1.8° |
| φ and ω scans | |
| 27541 measured reflections | |
| 7243 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 7243 reflections | (Δ/σ)max = 0.006 |
| 298 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1' | 0.5624 (2) | 0.56734 (16) | 0.09954 (8) | 0.0284 (4) | |
| H1' | 0.6130 | 0.5214 | 0.0736 | 0.034* | |
| C2 | 0.6060 (2) | 0.80786 (11) | 0.33245 (7) | 0.0160 (3) | |
| C2' | 0.5345 (2) | 0.53523 (13) | 0.15666 (8) | 0.0231 (3) | |
| H2' | 0.5671 | 0.4681 | 0.1680 | 0.028* | |
| C3 | 0.4619 (2) | 0.92243 (12) | 0.40282 (7) | 0.0189 (3) | |
| C3' | 0.4581 (2) | 0.60205 (12) | 0.19769 (7) | 0.0198 (3) | |
| C4' | 0.4129 (2) | 0.70239 (13) | 0.17921 (8) | 0.0261 (4) | |
| H4' | 0.3636 | 0.7488 | 0.2052 | 0.031* | |
| C4 | 0.4186 (2) | 1.03550 (13) | 0.41486 (8) | 0.0247 (3) | |
| H41 | 0.3953 | 1.0710 | 0.3788 | 0.037* | |
| H42 | 0.5127 | 1.0687 | 0.4345 | 0.037* | |
| H43 | 0.3202 | 1.0387 | 0.4389 | 0.037* | |
| C5 | 0.6899 (2) | 0.61643 (11) | 0.31921 (7) | 0.0163 (3) | |
| C5' | 0.4414 (3) | 0.73375 (16) | 0.12186 (9) | 0.0334 (4) | |
| H5' | 0.4100 | 0.8011 | 0.1105 | 0.040* | |
| C6' | 0.5158 (3) | 0.66697 (17) | 0.08093 (9) | 0.0316 (4) | |
| C6 | 0.5755 (2) | 0.53023 (11) | 0.29360 (7) | 0.0168 (3) | |
| H61 | 0.6439 | 0.4869 | 0.2684 | 0.020* | |
| H62 | 0.5382 | 0.4862 | 0.3254 | 0.020* | |
| C7' | 0.5422 (3) | 0.6998 (2) | 0.01806 (10) | 0.0496 (6) | |
| H71' | 0.4499 | 0.6741 | −0.0058 | 0.074* | |
| H72' | 0.6472 | 0.6711 | 0.0046 | 0.074* | |
| H73' | 0.5461 | 0.7749 | 0.0157 | 0.074* | |
| C7 | 0.4196 (2) | 0.56528 (12) | 0.25922 (7) | 0.0199 (3) | |
| H7 | 0.3686 | 0.6241 | 0.2801 | 0.024* | |
| C8 | 0.2898 (2) | 0.47506 (15) | 0.25783 (9) | 0.0280 (4) | |
| H81 | 0.2646 | 0.4544 | 0.2969 | 0.042* | |
| H82 | 0.3363 | 0.4165 | 0.2372 | 0.042* | |
| H83 | 0.1874 | 0.4980 | 0.2384 | 0.042* | |
| C9 | 0.8420 (2) | 0.56432 (12) | 0.34917 (7) | 0.0203 (3) | |
| H91 | 0.7995 | 0.5074 | 0.3728 | 0.024* | |
| H92 | 0.9113 | 0.5332 | 0.3192 | 0.024* | |
| C10 | 0.9575 (2) | 0.63119 (15) | 0.38756 (8) | 0.0260 (4) | |
| H10 | 0.8883 | 0.6640 | 0.4176 | 0.031* | |
| C11 | 1.0522 (2) | 0.71819 (16) | 0.35485 (11) | 0.0358 (5) | |
| H111 | 0.9721 | 0.7695 | 0.3410 | 0.054* | |
| H112 | 1.1105 | 0.6883 | 0.3224 | 0.054* | |
| H113 | 1.1330 | 0.7510 | 0.3807 | 0.054* | |
| C12 | 1.0842 (3) | 0.55835 (18) | 0.41726 (9) | 0.0389 (5) | |
| H123 | 1.0243 | 0.5062 | 0.4390 | 0.058* | |
| H121 | 1.1563 | 0.5980 | 0.4432 | 0.058* | |
| H122 | 1.1522 | 0.5247 | 0.3884 | 0.058* | |
| C41 | 0.8340 (2) | 0.67172 (12) | 0.22639 (7) | 0.0182 (3) | |
| C42 | 0.8709 (3) | 0.75771 (13) | 0.18334 (8) | 0.0259 (4) | |
| H423 | 0.7761 | 0.8050 | 0.1811 | 0.039* | |
| H421 | 0.8894 | 0.7276 | 0.1457 | 0.039* | |
| H422 | 0.9707 | 0.7953 | 0.1958 | 0.039* | |
| O1 | 0.42441 (18) | 0.85144 (10) | 0.43626 (6) | 0.0281 (3) | |
| O2 | 0.88630 (16) | 0.58120 (9) | 0.21879 (5) | 0.0211 (2) | |
| N1 | 0.54896 (18) | 0.90516 (10) | 0.35115 (6) | 0.0174 (3) | |
| H1 | 0.5686 | 0.9585 | 0.3294 | 0.021* | |
| N3 | 0.69220 (17) | 0.80070 (9) | 0.28451 (6) | 0.0169 (3) | |
| N4 | 0.74060 (18) | 0.69617 (9) | 0.27477 (6) | 0.0167 (3) | |
| S1 | 0.56524 (5) | 0.69427 (3) | 0.372883 (17) | 0.01838 (10) | |
| C1" | 0.4182 (8) | 0.3287 (4) | 0.4750 (2) | 0.0377 (11) | 0.50 |
| H13" | 0.4099 | 0.3038 | 0.4357 | 0.057* | 0.50 |
| H12" | 0.3115 | 0.3184 | 0.4939 | 0.057* | 0.50 |
| H11" | 0.5055 | 0.2906 | 0.4956 | 0.057* | 0.50 |
| C2" | 0.4610 (5) | 0.4425 (3) | 0.47503 (16) | 0.0282 (7) | 0.50 |
| C3" | 0.4243 (5) | 0.6083 (3) | 0.52319 (18) | 0.0325 (8) | 0.50 |
| H32" | 0.3404 | 0.6396 | 0.5483 | 0.039* | 0.50 |
| H31" | 0.4071 | 0.6367 | 0.4844 | 0.039* | 0.50 |
| C4" | 0.5952 (7) | 0.6366 (4) | 0.5446 (3) | 0.0398 (11) | 0.50 |
| H42" | 0.6142 | 0.6066 | 0.5825 | 0.060* | 0.50 |
| H43" | 0.6046 | 0.7115 | 0.5470 | 0.060* | 0.50 |
| H41" | 0.6784 | 0.6101 | 0.5182 | 0.060* | 0.50 |
| O1' | 0.5439 (5) | 0.4867 (3) | 0.43748 (15) | 0.0456 (8) | 0.50 |
| O2' | 0.3987 (4) | 0.4949 (2) | 0.52147 (12) | 0.0326 (6) | 0.50 |
| C1' | 0.0218 (9) | 0.0388 (10) | 0.0247 (9) | 0.0006 (7) | −0.0002 (7) | 0.0008 (7) |
| C2 | 0.0157 (7) | 0.0133 (6) | 0.0190 (7) | −0.0004 (5) | 0.0000 (5) | 0.0009 (5) |
| C2' | 0.0214 (8) | 0.0239 (7) | 0.0239 (8) | 0.0030 (6) | −0.0013 (6) | 0.0002 (6) |
| C3 | 0.0168 (7) | 0.0191 (7) | 0.0209 (7) | 0.0015 (5) | 0.0023 (6) | −0.0008 (5) |
| C3' | 0.0163 (7) | 0.0189 (7) | 0.0241 (8) | 0.0009 (5) | −0.0036 (6) | 0.0012 (6) |
| C4' | 0.0244 (9) | 0.0213 (7) | 0.0324 (9) | 0.0032 (6) | −0.0063 (7) | 0.0017 (6) |
| C4 | 0.0287 (9) | 0.0182 (7) | 0.0274 (9) | 0.0056 (6) | 0.0075 (7) | −0.0016 (6) |
| C5 | 0.0182 (7) | 0.0141 (6) | 0.0167 (7) | 0.0015 (5) | 0.0033 (5) | 0.0001 (5) |
| C5' | 0.0314 (10) | 0.0288 (9) | 0.0396 (11) | −0.0015 (7) | −0.0097 (8) | 0.0128 (8) |
| C6' | 0.0237 (9) | 0.0410 (10) | 0.0300 (10) | −0.0049 (8) | −0.0027 (7) | 0.0118 (8) |
| C6 | 0.0168 (7) | 0.0140 (6) | 0.0197 (7) | 0.0003 (5) | 0.0030 (6) | 0.0012 (5) |
| C7' | 0.0455 (14) | 0.0672 (17) | 0.0360 (12) | −0.0024 (12) | 0.0003 (10) | 0.0221 (11) |
| C7 | 0.0163 (7) | 0.0200 (7) | 0.0236 (8) | 0.0021 (6) | 0.0019 (6) | −0.0017 (6) |
| C8 | 0.0194 (8) | 0.0341 (9) | 0.0304 (9) | −0.0049 (7) | 0.0026 (7) | 0.0002 (7) |
| C9 | 0.0213 (8) | 0.0194 (7) | 0.0201 (7) | 0.0027 (6) | −0.0006 (6) | −0.0008 (5) |
| C10 | 0.0198 (8) | 0.0319 (9) | 0.0263 (9) | 0.0054 (7) | −0.0023 (7) | −0.0096 (7) |
| C11 | 0.0186 (9) | 0.0334 (9) | 0.0552 (13) | −0.0012 (7) | −0.0059 (9) | −0.0046 (9) |
| C12 | 0.0381 (12) | 0.0469 (12) | 0.0312 (10) | 0.0131 (9) | −0.0140 (9) | −0.0090 (9) |
| C41 | 0.0189 (7) | 0.0165 (6) | 0.0192 (7) | −0.0032 (5) | 0.0020 (6) | −0.0025 (5) |
| C42 | 0.0341 (10) | 0.0189 (7) | 0.0252 (8) | −0.0031 (6) | 0.0116 (7) | −0.0002 (6) |
| O1 | 0.0367 (8) | 0.0199 (5) | 0.0280 (7) | 0.0030 (5) | 0.0130 (6) | 0.0025 (5) |
| O2 | 0.0224 (6) | 0.0179 (5) | 0.0231 (6) | 0.0007 (4) | 0.0039 (5) | −0.0040 (4) |
| N1 | 0.0207 (7) | 0.0137 (5) | 0.0179 (6) | 0.0020 (5) | 0.0031 (5) | 0.0003 (4) |
| N3 | 0.0182 (6) | 0.0126 (5) | 0.0200 (6) | −0.0002 (5) | 0.0020 (5) | −0.0003 (4) |
| N4 | 0.0202 (6) | 0.0126 (5) | 0.0175 (6) | −0.0004 (5) | 0.0037 (5) | −0.0007 (4) |
| S1 | 0.0229 (2) | 0.01389 (16) | 0.01860 (18) | 0.00144 (13) | 0.00611 (14) | 0.00131 (12) |
| C1" | 0.057 (3) | 0.029 (2) | 0.027 (2) | −0.001 (2) | 0.001 (2) | 0.0012 (17) |
| C2" | 0.0284 (19) | 0.0352 (18) | 0.0210 (17) | 0.0066 (15) | −0.0007 (14) | 0.0079 (14) |
| C3" | 0.033 (2) | 0.0322 (18) | 0.032 (2) | 0.0021 (16) | −0.0019 (16) | 0.0023 (15) |
| C4" | 0.031 (2) | 0.039 (3) | 0.048 (3) | 0.002 (2) | −0.006 (2) | 0.000 (2) |
| O1' | 0.063 (2) | 0.0384 (16) | 0.0367 (18) | 0.0035 (15) | 0.0194 (16) | 0.0102 (13) |
| O2' | 0.0443 (17) | 0.0310 (13) | 0.0225 (13) | −0.0037 (12) | −0.0010 (12) | 0.0033 (10) |
| C1'—C6' | 1.389 (3) | C8—H83 | 0.9600 |
| C1'—C2' | 1.395 (3) | C9—C10 | 1.519 (2) |
| C1'—H1' | 0.9300 | C9—H91 | 0.9700 |
| C2—N3 | 1.306 (2) | C9—H92 | 0.9700 |
| C2—N1 | 1.3904 (19) | C10—C12 | 1.517 (3) |
| C2—S1 | 1.7537 (15) | C10—C11 | 1.540 (3) |
| C2'—C3' | 1.413 (2) | C10—H10 | 0.9800 |
| C2'—H2' | 0.9300 | C11—H111 | 0.9600 |
| C3—O1 | 1.227 (2) | C11—H112 | 0.9600 |
| C3—N1 | 1.398 (2) | C11—H113 | 0.9600 |
| C3—C4 | 1.509 (2) | C12—H123 | 0.9600 |
| C3'—C4' | 1.393 (2) | C12—H121 | 0.9600 |
| C3'—C7 | 1.524 (2) | C12—H122 | 0.9600 |
| C4'—C5' | 1.398 (3) | C41—O2 | 1.2394 (18) |
| C4'—H4' | 0.9300 | C41—N4 | 1.378 (2) |
| C4—H41 | 0.9600 | C41—C42 | 1.508 (2) |
| C4—H42 | 0.9600 | C42—H423 | 0.9600 |
| C4—H43 | 0.9600 | C42—H421 | 0.9600 |
| C5—N4 | 1.4998 (19) | C42—H422 | 0.9600 |
| C5—C9 | 1.524 (2) | N1—H1 | 0.8600 |
| C5—C6 | 1.533 (2) | N3—N4 | 1.4058 (17) |
| C5—S1 | 1.8732 (15) | C1"—C2" | 1.490 (6) |
| C5'—C6' | 1.404 (3) | C1"—H13" | 0.9600 |
| C5'—H5' | 0.9300 | C1"—H12" | 0.9600 |
| C6'—C7' | 1.521 (3) | C1"—H11" | 0.9600 |
| C6—C7 | 1.516 (2) | C2"—O1' | 1.227 (5) |
| C6—H61 | 0.9700 | C2"—O2' | 1.358 (5) |
| C6—H62 | 0.9700 | C3"—O2' | 1.461 (5) |
| C7'—H71' | 0.9600 | C3"—C4" | 1.470 (7) |
| C7'—H72' | 0.9600 | C3"—H32" | 0.9700 |
| C7'—H73' | 0.9600 | C3"—H31" | 0.9700 |
| C7—C8 | 1.539 (2) | C4"—H42" | 0.9600 |
| C7—H7 | 0.9800 | C4"—H43" | 0.9600 |
| C8—H81 | 0.9600 | C4"—H41" | 0.9600 |
| C8—H82 | 0.9600 | ||
| C6'—C1'—C2' | 120.88 (18) | H81—C8—H82 | 109.5 |
| C6'—C1'—H1' | 119.6 | C7—C8—H83 | 109.5 |
| C2'—C1'—H1' | 119.6 | H81—C8—H83 | 109.5 |
| N3—C2—N1 | 119.84 (13) | H82—C8—H83 | 109.5 |
| N3—C2—S1 | 119.38 (11) | C10—C9—C5 | 118.40 (13) |
| N1—C2—S1 | 120.77 (12) | C10—C9—H91 | 107.7 |
| C1'—C2'—C3' | 121.70 (16) | C5—C9—H91 | 107.7 |
| C1'—C2'—H2' | 119.2 | C10—C9—H92 | 107.7 |
| C3'—C2'—H2' | 119.2 | C5—C9—H92 | 107.7 |
| O1—C3—N1 | 122.80 (14) | H91—C9—H92 | 107.1 |
| O1—C3—C4 | 122.25 (15) | C12—C10—C9 | 107.44 (15) |
| N1—C3—C4 | 114.95 (14) | C12—C10—C11 | 109.96 (17) |
| C4'—C3'—C2' | 117.43 (16) | C9—C10—C11 | 114.31 (16) |
| C4'—C3'—C7 | 120.79 (16) | C12—C10—H10 | 108.3 |
| C2'—C3'—C7 | 121.74 (14) | C9—C10—H10 | 108.3 |
| C3'—C4'—C5' | 120.40 (18) | C11—C10—H10 | 108.3 |
| C3'—C4'—H4' | 119.8 | C10—C11—H111 | 109.5 |
| C5'—C4'—H4' | 119.8 | C10—C11—H112 | 109.5 |
| C3—C4—H41 | 109.5 | H111—C11—H112 | 109.5 |
| C3—C4—H42 | 109.5 | C10—C11—H113 | 109.5 |
| H41—C4—H42 | 109.5 | H111—C11—H113 | 109.5 |
| C3—C4—H43 | 109.5 | H112—C11—H113 | 109.5 |
| H41—C4—H43 | 109.5 | C10—C12—H123 | 109.5 |
| H42—C4—H43 | 109.5 | C10—C12—H121 | 109.5 |
| N4—C5—C9 | 112.80 (13) | H123—C12—H121 | 109.5 |
| N4—C5—C6 | 112.75 (12) | C10—C12—H122 | 109.5 |
| C9—C5—C6 | 108.21 (12) | H123—C12—H122 | 109.5 |
| N4—C5—S1 | 103.67 (9) | H121—C12—H122 | 109.5 |
| C9—C5—S1 | 110.51 (11) | O2—C41—N4 | 120.49 (14) |
| C6—C5—S1 | 108.79 (11) | O2—C41—C42 | 121.15 (15) |
| C4'—C5'—C6' | 122.16 (17) | N4—C41—C42 | 118.36 (13) |
| C4'—C5'—H5' | 118.9 | C41—C42—H423 | 109.5 |
| C6'—C5'—H5' | 118.9 | C41—C42—H421 | 109.5 |
| C1'—C6'—C5' | 117.43 (18) | H423—C42—H421 | 109.5 |
| C1'—C6'—C7' | 120.3 (2) | C41—C42—H422 | 109.5 |
| C5'—C6'—C7' | 122.3 (2) | H423—C42—H422 | 109.5 |
| C7—C6—C5 | 116.99 (12) | H421—C42—H422 | 109.5 |
| C7—C6—H61 | 108.1 | C2—N1—C3 | 124.63 (13) |
| C5—C6—H61 | 108.1 | C2—N1—H1 | 117.7 |
| C7—C6—H62 | 108.1 | C3—N1—H1 | 117.7 |
| C5—C6—H62 | 108.1 | C2—N3—N4 | 110.27 (12) |
| H61—C6—H62 | 107.3 | C41—N4—N3 | 119.50 (12) |
| C6'—C7'—H71' | 109.5 | C41—N4—C5 | 123.13 (12) |
| C6'—C7'—H72' | 109.5 | N3—N4—C5 | 117.36 (12) |
| H71'—C7'—H72' | 109.5 | C2—S1—C5 | 89.27 (7) |
| C6'—C7'—H73' | 109.5 | O1'—C2"—O2' | 121.9 (4) |
| H71'—C7'—H73' | 109.5 | O1'—C2"—C1" | 124.8 (4) |
| H72'—C7'—H73' | 109.5 | O2'—C2"—C1" | 113.3 (4) |
| C6—C7—C3' | 113.72 (14) | O2'—C3"—C4" | 112.2 (4) |
| C6—C7—C8 | 108.77 (13) | O2'—C3"—H32" | 109.2 |
| C3'—C7—C8 | 110.65 (14) | C4"—C3"—H32" | 109.2 |
| C6—C7—H7 | 107.8 | O2'—C3"—H31" | 109.2 |
| C3'—C7—H7 | 107.8 | C4"—C3"—H31" | 109.2 |
| C8—C7—H7 | 107.8 | H32"—C3"—H31" | 107.9 |
| C7—C8—H81 | 109.5 | C2"—O2'—C3" | 117.3 (3) |
| C7—C8—H82 | 109.5 |
| H··· | ||||
| N1—H1···O2i | 0.86 | 1.95 | 2.812 (2) | 179 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O2i | 0.86 | 1.95 | 2.812 (2) | 179 |
Symmetry code: (i) .