Literature DB >> 21583133

N-[4-Acetyl-5-(2-methylprop-1-enyl)-5-(2-p-tolyl-prop-yl)-4,5-dihydro-1,3,4-thia-diazol-2-yl]acetamide.

Noureddine Mazoir, Lahcen El Ammari, Nouzha Bouhmaida, Slimane Dahaoui, Ahmed Benharref, Moha Berraho.   

Abstract

The title heterocyclic compound, C(20)H(27)N(3)O(2)S, was synthesized from 2-(4-methyl-cyclo-hex-3-en-yl)-6-methyl-hepta-2,5-dien-4-one, which was isolated from the n class="Chemical">essential oil Cedrus atlantica. The thia-diazole ring is essentially planar [maximum deviation 0.006 (2) Å] and it forms a dihedral angle of 18.08 (9)° with the benzene ring. The dihedral angle between the thia-diazole ring and the acetamide plane is 7.62 (10)°. In the crystal, mol-ecules are linked into chains running along the c axis by inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583133      PMCID: PMC2969617          DOI: 10.1107/S1600536809017127

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 1,3,4-thia­diazole derivatives, see: Demirbas et al. (2005 ▶); Holla et al. (2002 ▶); Kritsanida et al. (2002 ▶); Nizamuddin et al. (1999 ▶); Sun et al. (1999 ▶); Udupi et al. (2000 ▶). For the synthesis, see: Beatriz et al. (2002 ▶); Sakthivel et al. (2008 ▶). For related structures, see: Loughzail et al. (2009 ▶); Tebaa et al. (2009 ▶).

Experimental

Crystal data

C20H27N3O2S M = 373.51 Monoclinic, a = 10.855 (2) Å b = 14.193 (2) Å c = 12.854 (4) Å β = 90.955 (11)° V = 1980.1 (8) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 100 K 0.28 × 0.17 × 0.12 mm

Data collection

Bruker X8 APEX CCD area-detector diffractometer Absorption correction: none 7884 measured reflections 4030 independent reflections 3365 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.094 S = 1.10 4030 reflections 249 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017127/ci2797sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017127/ci2797Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H27N3O2SF(000) = 800
Mr = 373.51Dx = 1.253 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8068 reflections
a = 10.855 (2) Åθ = 2.8–26.4°
b = 14.193 (2) ŵ = 0.18 mm1
c = 12.854 (4) ÅT = 100 K
β = 90.955 (11)°Prism, colourless
V = 1980.1 (8) Å30.28 × 0.17 × 0.12 mm
Z = 4
Bruker X8 APEX CCD area-detector diffractometer3365 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
graphiteθmax = 26.4°, θmin = 2.8°
φ and ω scansh = 0→13
7884 measured reflectionsk = −17→17
4030 independent reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0257P)2 + 1.5568P] where P = (Fo2 + 2Fc2)/3
4030 reflections(Δ/σ)max = 0.001
249 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
H20.357 (2)0.0915 (17)0.0811 (19)0.039 (7)*
H90.5323 (18)0.1563 (13)0.5491 (16)0.018 (5)*
C1'0.04998 (19)0.36320 (14)0.44410 (16)0.0263 (4)
H1'0.04730.41820.48330.032*
C2'0.10902 (18)0.28480 (14)0.48503 (15)0.0231 (4)
H2'0.14420.28790.55140.028*
C20.37116 (16)0.09545 (13)0.23153 (13)0.0180 (4)
C3'0.11662 (17)0.20141 (13)0.42843 (14)0.0188 (4)
C30.35748 (17)−0.04166 (13)0.11768 (14)0.0204 (4)
C40.33879 (19)−0.07060 (14)0.00610 (14)0.0252 (4)
H400.3814−0.1287−0.00610.038*
H410.3706−0.0225−0.03860.038*
H420.2524−0.0790−0.00830.038*
C4'0.05884 (17)0.19924 (14)0.33050 (14)0.0216 (4)
H4'0.06110.14420.29130.026*
C50.41102 (17)0.13772 (12)0.42180 (14)0.0178 (4)
C5'−0.00180 (17)0.27755 (14)0.29079 (15)0.0234 (4)
H5'−0.04080.27370.22600.028*
C60.31344 (17)0.12846 (13)0.50691 (13)0.0185 (4)
H600.33700.07590.55120.022*
H610.31760.18480.54950.022*
C6'−0.00551 (18)0.36170 (14)0.34573 (16)0.0247 (4)
C70.17835 (17)0.11399 (13)0.47324 (14)0.0191 (4)
H70.17520.06440.42030.023*
C7'−0.0625 (2)0.44905 (15)0.29915 (17)0.0326 (5)
H70'−0.00040.48480.26440.049*
H71'−0.09740.48660.35330.049*
H72'−0.12600.43150.25000.049*
C80.10620 (18)0.07994 (13)0.56829 (14)0.0227 (4)
H800.14030.02150.59280.034*
H810.02130.07080.54870.034*
H820.11200.12630.62260.034*
C90.53585 (18)0.15303 (13)0.47409 (14)0.0200 (4)
C100.64558 (18)0.16273 (13)0.43130 (15)0.0226 (4)
C110.67035 (19)0.16274 (15)0.31623 (16)0.0286 (5)
H1110.73020.11510.30090.043*
H1120.70130.22330.29610.043*
H1130.59530.14980.27840.043*
C120.75806 (19)0.17719 (15)0.49976 (17)0.0304 (5)
H1210.79820.23480.48070.046*
H1220.81380.12540.49110.046*
H1230.73390.18070.57120.046*
C410.37297 (17)0.30457 (13)0.37021 (13)0.0177 (4)
C420.33714 (19)0.37167 (13)0.28539 (14)0.0231 (4)
H4200.39910.37150.23300.035*
H4210.32960.43400.31370.035*
H4220.25970.35270.25500.035*
N10.35903 (15)0.05391 (11)0.13421 (12)0.0192 (3)
N30.35840 (14)0.18471 (10)0.24065 (11)0.0183 (3)
N40.38013 (14)0.21218 (10)0.34384 (11)0.0174 (3)
O10.36850 (13)−0.09778 (9)0.18908 (10)0.0256 (3)
O20.39419 (12)0.32905 (9)0.46085 (9)0.0213 (3)
S10.40785 (4)0.02872 (3)0.34223 (3)0.01914 (12)
U11U22U33U12U13U23
C1'0.0305 (11)0.0224 (10)0.0261 (10)0.0034 (8)0.0050 (8)−0.0035 (8)
C2'0.0251 (10)0.0248 (10)0.0195 (9)0.0012 (8)0.0007 (8)−0.0015 (8)
C20.0184 (9)0.0205 (9)0.0153 (9)0.0010 (7)0.0019 (7)0.0011 (7)
C3'0.0175 (9)0.0199 (9)0.0192 (9)−0.0004 (7)0.0020 (7)0.0011 (7)
C30.0198 (9)0.0198 (9)0.0215 (10)0.0000 (8)0.0010 (7)−0.0005 (7)
C40.0334 (11)0.0220 (10)0.0201 (10)0.0008 (8)−0.0041 (8)−0.0041 (8)
C4'0.0212 (10)0.0228 (9)0.0207 (9)−0.0018 (8)0.0007 (7)−0.0010 (8)
C50.0221 (9)0.0169 (9)0.0144 (8)0.0007 (7)0.0003 (7)0.0003 (7)
C5'0.0206 (10)0.0304 (10)0.0192 (9)−0.0002 (8)0.0002 (8)0.0043 (8)
C60.0239 (10)0.0187 (9)0.0128 (8)0.0013 (8)−0.0008 (7)0.0012 (7)
C6'0.0196 (10)0.0272 (10)0.0276 (10)0.0032 (8)0.0058 (8)0.0068 (8)
C70.0231 (10)0.0181 (9)0.0160 (9)−0.0001 (7)0.0011 (7)−0.0020 (7)
C7'0.0328 (12)0.0314 (11)0.0338 (12)0.0119 (9)0.0082 (9)0.0077 (9)
C80.0248 (10)0.0216 (9)0.0216 (10)−0.0014 (8)0.0009 (8)0.0000 (8)
C90.0245 (10)0.0197 (9)0.0157 (9)0.0011 (7)−0.0032 (7)0.0018 (7)
C100.0253 (10)0.0171 (9)0.0254 (10)0.0020 (8)−0.0015 (8)0.0013 (7)
C110.0258 (11)0.0285 (11)0.0316 (11)−0.0001 (9)0.0064 (9)−0.0002 (9)
C120.0229 (11)0.0271 (11)0.0410 (12)0.0019 (9)−0.0029 (9)−0.0013 (9)
C410.0193 (9)0.0187 (9)0.0153 (9)−0.0014 (7)0.0009 (7)−0.0003 (7)
C420.0332 (11)0.0183 (9)0.0176 (9)0.0004 (8)−0.0029 (8)−0.0003 (7)
N10.0274 (9)0.0185 (8)0.0117 (7)0.0001 (7)0.0000 (6)−0.0010 (6)
N30.0230 (8)0.0188 (8)0.0130 (7)0.0003 (6)−0.0009 (6)−0.0019 (6)
N40.0240 (8)0.0174 (7)0.0107 (7)0.0021 (6)−0.0006 (6)0.0014 (6)
O10.0358 (8)0.0201 (7)0.0208 (7)0.0013 (6)0.0010 (6)0.0016 (6)
O20.0277 (7)0.0211 (7)0.0149 (6)0.0000 (6)−0.0011 (5)−0.0019 (5)
S10.0254 (2)0.0175 (2)0.0145 (2)0.00277 (19)0.00084 (17)0.00137 (18)
C1'—C2'1.384 (3)C6'—C7'1.505 (3)
C1'—C6'1.392 (3)C7—C81.540 (3)
C1'—H1'0.93C7—H70.98
C2'—C3'1.392 (3)C7'—H70'0.96
C2'—H2'0.93C7'—H71'0.96
C2—N31.280 (2)C7'—H72'0.96
C2—N11.387 (2)C8—H800.96
C2—S11.7497 (18)C8—H810.96
C3'—C4'1.397 (3)C8—H820.96
C3'—C71.519 (2)C9—C101.327 (3)
C3—O11.219 (2)C9—H90.97 (2)
C3—N11.373 (2)C10—C121.507 (3)
C3—C41.502 (3)C10—C111.508 (3)
C4—H400.96C11—H1110.96
C4—H410.96C11—H1120.96
C4—H420.96C11—H1130.96
C4'—C5'1.385 (3)C12—H1210.96
C4'—H4'0.93C12—H1220.96
C5—N41.491 (2)C12—H1230.96
C5—C91.518 (3)C41—O21.234 (2)
C5—C61.541 (2)C41—N41.357 (2)
C5—S11.8545 (18)C41—C421.494 (2)
C5'—C6'1.388 (3)C42—H4200.96
C5'—H5'0.93C42—H4210.96
C6—C71.536 (3)C42—H4220.96
C6—H600.97N1—H20.87 (2)
C6—H610.97N3—N41.399 (2)
C2'—C1'—C6'121.60 (18)C6'—C7'—H70'109.5
C2'—C1'—H1'119.2C6'—C7'—H71'109.5
C6'—C1'—H1'119.2H70'—C7'—H71'109.5
C1'—C2'—C3'121.06 (18)C6'—C7'—H72'109.5
C1'—C2'—H2'119.5H70'—C7'—H72'109.5
C3'—C2'—H2'119.5H71'—C7'—H72'109.5
N3—C2—N1119.63 (16)C7—C8—H80109.5
N3—C2—S1119.00 (14)C7—C8—H81109.5
N1—C2—S1121.35 (14)H80—C8—H81109.5
C2'—C3'—C4'117.38 (17)C7—C8—H82109.5
C2'—C3'—C7121.72 (16)H80—C8—H82109.5
C4'—C3'—C7120.80 (16)H81—C8—H82109.5
O1—C3—N1121.87 (17)C10—C9—C5129.19 (17)
O1—C3—C4123.36 (17)C10—C9—H9117.4 (12)
N1—C3—C4114.76 (16)C5—C9—H9113.5 (12)
C3—C4—H40109.5C9—C10—C12119.73 (18)
C3—C4—H41109.5C9—C10—C11125.62 (18)
H40—C4—H41109.5C12—C10—C11114.63 (17)
C3—C4—H42109.5C10—C11—H111109.5
H40—C4—H42109.5C10—C11—H112109.5
H41—C4—H42109.5H111—C11—H112109.5
C5'—C4'—C3'121.18 (18)C10—C11—H113109.5
C5'—C4'—H4'119.4H111—C11—H113109.5
C3'—C4'—H4'119.4H112—C11—H113109.5
N4—C5—C9112.66 (15)C10—C12—H121109.5
N4—C5—C6112.84 (14)C10—C12—H122109.5
C9—C5—C6108.48 (15)H121—C12—H122109.5
N4—C5—S1102.63 (11)C10—C12—H123109.5
C9—C5—S1111.83 (13)H121—C12—H123109.5
C6—C5—S1108.29 (12)H122—C12—H123109.5
C4'—C5'—C6'121.37 (18)O2—C41—N4119.83 (16)
C4'—C5'—H5'119.3O2—C41—C42123.49 (16)
C6'—C5'—H5'119.3N4—C41—C42116.67 (15)
C7—C6—C5118.41 (15)C41—C42—H420109.5
C7—C6—H60107.7C41—C42—H421109.5
C5—C6—H60107.7H420—C42—H421109.5
C7—C6—H61107.7C41—C42—H422109.5
C5—C6—H61107.7H420—C42—H422109.5
H60—C6—H61107.1H421—C42—H422109.5
C5'—C6'—C1'117.35 (18)C3—N1—C2124.06 (16)
C5'—C6'—C7'121.43 (18)C3—N1—H2119.1 (16)
C1'—C6'—C7'121.17 (19)C2—N1—H2116.7 (16)
C3'—C7—C6114.25 (15)C2—N3—N4110.24 (14)
C3'—C7—C8109.29 (15)C41—N4—N3119.79 (14)
C6—C7—C8108.32 (15)C41—N4—C5122.03 (14)
C3'—C7—H7108.3N3—N4—C5118.18 (14)
C6—C7—H7108.3C2—S1—C589.94 (8)
C8—C7—H7108.3
C6'—C1'—C2'—C3'0.9 (3)O1—C3—N1—C2−1.0 (3)
C1'—C2'—C3'—C4'−2.1 (3)C4—C3—N1—C2177.88 (17)
C1'—C2'—C3'—C7−178.47 (17)N3—C2—N1—C3−172.52 (18)
C2'—C3'—C4'—C5'1.0 (3)S1—C2—N1—C39.3 (3)
C7—C3'—C4'—C5'177.45 (17)N1—C2—N3—N4−177.12 (15)
C3'—C4'—C5'—C6'1.3 (3)S1—C2—N3—N41.1 (2)
N4—C5—C6—C753.5 (2)O2—C41—N4—N3−178.76 (15)
C9—C5—C6—C7179.04 (15)C42—C41—N4—N32.1 (2)
S1—C5—C6—C7−59.41 (18)O2—C41—N4—C51.1 (3)
C4'—C5'—C6'—C1'−2.5 (3)C42—C41—N4—C5−178.05 (16)
C4'—C5'—C6'—C7'175.03 (18)C2—N3—N4—C41179.12 (16)
C2'—C1'—C6'—C5'1.4 (3)C2—N3—N4—C5−0.7 (2)
C2'—C1'—C6'—C7'−176.10 (19)C9—C5—N4—C41−59.4 (2)
C2'—C3'—C7—C6−57.9 (2)C6—C5—N4—C4163.9 (2)
C4'—C3'—C7—C6125.84 (18)S1—C5—N4—C41−179.78 (14)
C2'—C3'—C7—C863.6 (2)C9—C5—N4—N3120.51 (17)
C4'—C3'—C7—C8−112.64 (19)C6—C5—N4—N3−116.23 (16)
C5—C6—C7—C3'−73.3 (2)S1—C5—N4—N30.08 (18)
C5—C6—C7—C8164.63 (15)N3—C2—S1—C5−0.96 (16)
N4—C5—C9—C10−55.8 (3)N1—C2—S1—C5177.27 (16)
C6—C5—C9—C10178.55 (19)N4—C5—S1—C20.41 (12)
S1—C5—C9—C1059.2 (2)C9—C5—S1—C2−120.59 (14)
C5—C9—C10—C12−179.85 (17)C6—C5—S1—C2119.95 (13)
C5—C9—C10—C111.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H2···O2i0.87 (2)1.96 (2)2.811 (2)167 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H2⋯O2i0.87 (2)1.96 (2)2.811 (2)167 (2)

Symmetry code: (i) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Marina Kritsanida; Anastasia Mouroutsou; Panagiotis Marakos; Nicole Pouli; Spyroula Papakonstantinou-Garoufalias; Christophe Pannecouque; Myriam Witvrouw; Erik De Clercq
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Journal:  Eur J Med Chem       Date:  2002-06       Impact factor: 6.514

4.  N-[4-Acetyl-5-methyl-5-(2-p-tolyl-prop-yl)-4,5-dihydro-1,3,4-thia-diazol-2-yl]acetamide.

Authors:  Mohamed Tebaa; Noureddine Mazoir; Celia M Maya; Bouhmaida Nouzha; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-10

5.  N-[1-(5-Acetamido-3-acetyl-2-methyl-2,3-dihydro-1,3,4-thia-diazol-2-yl)-2-phenyl-ethyl]acetamide.

Authors:  P Sakthivel; P S Joseph; P Thomas Muthiah; K Sethusankar; S Thennarasu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

6.  N-[4-Acetyl-5-isobutyl-5-(2-p-tolyl-prop-yl)-4,5-dihydro-1,3,4-thia-diazol-2-yl]acetamide ethyl acetate hemisolvate.

Authors:  Mohamed Loughzail; Noureddine Mazoir; Celia M Maya; Moha Berraho; Ahmed Benharref; Nouzha Bouhmaida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-03

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  2-Acetyl-3,5,5,9-tetra-methyl-6,7,8,9-tetra-hydro-5H-benzocyclo-hepten-7-one.

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