Literature DB >> 21581630

2-(1,3-Dithian-2-yl)-1,3-dithiane-2-carbaldehyde.

Hoong-Kun Fun, Reza Kia, Annada C Maity, Shyamaprosad Goswami.   

Abstract

The asymmetric unit of the title compound, C(9)H(14)OS(4), comprises two crystallographically independent mol-ecules with similar conformations. In each mol-ecule, an intra-molecular C-H⋯O hydrogen bond generates a six-membered ring, producing an S(6) ring motif. All of the six-membered dithia-cyclo-hexane rings adopt chair conformations. The crystal structure is stabilized by four inter-molecular C-H⋯O and one C-H⋯S inter-action.

Entities:  

Year:  2008        PMID: 21581630      PMCID: PMC2968084          DOI: 10.1107/S1600536808042864

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶). For related literature, see: Goswami & Maity (2008 ▶); Rubin & Gleiter (2000 ▶); Wasserman & Parr (2004 ▶).

Experimental

Crystal data

C9H14OS4 M = 266.44 Monoclinic, a = 13.0028 (2) Å b = 13.6790 (2) Å c = 13.4244 (2) Å β = 91.873 (1)° V = 2386.46 (6) Å3 Z = 8 Mo Kα radiation μ = 0.76 mm−1 T = 100.0 (1) K 0.39 × 0.28 × 0.19 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.754, T max = 0.871 68856 measured reflections 12473 independent reflections 9371 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.087 S = 1.07 12473 reflections 253 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808042864/is2376sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042864/is2376Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H14OS4F(000) = 1120
Mr = 266.44Dx = 1.483 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6037 reflections
a = 13.0028 (2) Åθ = 2.6–35.5°
b = 13.6790 (2) ŵ = 0.76 mm1
c = 13.4244 (2) ÅT = 100 K
β = 91.873 (1)°Block, colourless
V = 2386.46 (6) Å30.39 × 0.28 × 0.19 mm
Z = 8
Bruker SMART APEXII CCD area-detector diffractometer12473 independent reflections
Radiation source: fine-focus sealed tube9371 reflections with I > 2σ(I)
graphiteRint = 0.055
φ and ω scansθmax = 37.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −22→20
Tmin = 0.754, Tmax = 0.871k = −22→23
68856 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0325P)2 + 0.5359P] where P = (Fo2 + 2Fc2)/3
12473 reflections(Δ/σ)max = 0.002
253 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.37 e Å3
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1A0.46746 (2)0.654917 (19)0.92342 (2)0.01556 (5)
S2A0.62228 (2)0.66697 (2)0.75806 (2)0.01787 (5)
S3A0.74126 (2)0.47975 (2)0.86715 (2)0.01958 (6)
S4A0.71041 (2)0.65781 (2)0.99797 (2)0.02006 (6)
O1A0.48320 (8)0.48599 (7)0.72999 (8)0.02660 (19)
C1A0.37902 (8)0.68880 (8)0.82162 (9)0.01741 (19)
H1AA0.35550.63000.78750.021*
H1AB0.31940.72060.84870.021*
C2A0.42752 (9)0.75689 (8)0.74674 (9)0.0190 (2)
H2AA0.37400.78230.70190.023*
H2AB0.45860.81180.78220.023*
C3A0.50888 (9)0.70711 (9)0.68583 (9)0.0201 (2)
H3AA0.53050.75200.63470.024*
H3AB0.47810.65080.65260.024*
C4A0.56675 (8)0.59204 (7)0.85376 (8)0.01396 (17)
C5A0.65016 (8)0.55798 (7)0.92955 (8)0.01432 (17)
H5AA0.61590.51710.97840.017*
C6A0.80918 (9)0.43427 (9)0.97830 (10)0.0229 (2)
H6AA0.76120.39801.01800.027*
H6AB0.86220.38910.95830.027*
C7A0.85868 (10)0.51357 (9)1.04276 (11)0.0247 (2)
H7AA0.90510.55121.00270.030*
H7AB0.89930.48301.09610.030*
C8A0.78136 (10)0.58263 (9)1.08808 (10)0.0238 (2)
H8AA0.81760.62521.13520.029*
H8AB0.73270.54431.12500.029*
C9A0.51184 (9)0.50023 (8)0.81473 (9)0.0182 (2)
H9AA0.49950.45110.86070.022*
S1B0.86151 (2)0.28160 (2)0.29985 (2)0.01813 (6)
S2B1.02461 (2)0.43886 (2)0.33386 (2)0.01876 (6)
S3B0.78758 (2)0.51420 (2)0.34283 (2)0.01985 (6)
S4B0.75193 (2)0.35947 (2)0.49927 (2)0.02279 (6)
O1B1.00970 (7)0.22837 (7)0.47436 (7)0.02534 (18)
C1B0.96908 (9)0.21483 (9)0.24967 (10)0.0238 (2)
H1BA0.99860.17320.30170.029*
H1BB0.94320.17270.19640.029*
C2B1.05386 (10)0.27878 (11)0.20949 (10)0.0276 (3)
H2BA1.02460.32010.15710.033*
H2BB1.10490.23710.17990.033*
C3B1.10724 (9)0.34340 (10)0.28785 (10)0.0239 (2)
H3BA1.16720.37320.25930.029*
H3BB1.13080.30300.34340.029*
C4B0.92466 (8)0.36320 (7)0.38847 (8)0.01385 (17)
C5B0.84575 (8)0.43202 (8)0.43385 (8)0.01527 (18)
H5BA0.88260.47230.48370.018*
C6B0.71805 (10)0.58963 (9)0.42935 (10)0.0251 (2)
H6BA0.76750.62150.47420.030*
H6BB0.68180.64030.39190.030*
C7B0.64127 (10)0.53471 (10)0.49091 (10)0.0256 (2)
H7BA0.59300.50120.44620.031*
H7BB0.60260.58160.52900.031*
C8B0.68984 (11)0.46041 (11)0.56230 (10)0.0275 (3)
H8BA0.63700.43440.60430.033*
H8BB0.74040.49320.60520.033*
C9B0.98274 (9)0.31267 (8)0.47398 (9)0.01764 (19)
H9BA0.99880.34970.53050.021*
U11U22U33U12U13U23
S1A0.01482 (11)0.01624 (11)0.01573 (12)0.00201 (8)0.00224 (9)−0.00020 (9)
S2A0.01485 (11)0.02094 (12)0.01797 (13)0.00106 (9)0.00283 (9)0.00538 (9)
S3A0.01766 (12)0.01907 (12)0.02204 (14)0.00508 (9)0.00125 (10)−0.00104 (10)
S4A0.02219 (13)0.01382 (11)0.02366 (14)0.00037 (9)−0.00701 (10)−0.00098 (9)
O1A0.0337 (5)0.0184 (4)0.0268 (5)0.0044 (3)−0.0117 (4)−0.0054 (3)
C1A0.0144 (4)0.0167 (5)0.0210 (5)0.0019 (3)−0.0002 (4)0.0004 (4)
C2A0.0185 (5)0.0158 (5)0.0226 (5)0.0031 (4)−0.0013 (4)0.0032 (4)
C3A0.0206 (5)0.0216 (5)0.0180 (5)0.0030 (4)0.0008 (4)0.0063 (4)
C4A0.0146 (4)0.0122 (4)0.0152 (5)0.0007 (3)0.0017 (3)0.0002 (3)
C5A0.0140 (4)0.0120 (4)0.0170 (5)0.0001 (3)0.0004 (3)0.0008 (3)
C6A0.0200 (5)0.0180 (5)0.0306 (6)0.0042 (4)−0.0018 (4)0.0039 (4)
C7A0.0199 (5)0.0217 (5)0.0320 (7)0.0011 (4)−0.0078 (5)0.0051 (5)
C8A0.0246 (5)0.0226 (5)0.0236 (6)0.0005 (4)−0.0089 (4)0.0013 (4)
C9A0.0180 (5)0.0137 (4)0.0229 (5)0.0016 (3)−0.0010 (4)−0.0010 (4)
S1B0.01571 (11)0.01880 (12)0.01966 (13)0.00048 (9)−0.00272 (9)−0.00554 (9)
S2B0.01721 (11)0.01821 (12)0.02107 (13)−0.00308 (9)0.00389 (10)0.00171 (9)
S3B0.02317 (13)0.01821 (12)0.01821 (13)0.00516 (9)0.00150 (10)0.00249 (9)
S4B0.02262 (13)0.02165 (13)0.02473 (15)0.00012 (10)0.01028 (11)0.00316 (11)
O1B0.0301 (5)0.0229 (4)0.0227 (4)0.0064 (3)−0.0031 (4)0.0032 (3)
C1B0.0233 (5)0.0241 (6)0.0239 (6)0.0056 (4)−0.0001 (4)−0.0093 (4)
C2B0.0267 (6)0.0357 (7)0.0207 (6)0.0061 (5)0.0059 (5)−0.0043 (5)
C3B0.0179 (5)0.0285 (6)0.0258 (6)0.0027 (4)0.0075 (4)0.0016 (5)
C4B0.0142 (4)0.0144 (4)0.0129 (4)−0.0013 (3)0.0005 (3)−0.0001 (3)
C5B0.0170 (4)0.0145 (4)0.0143 (5)−0.0005 (3)0.0006 (3)0.0000 (3)
C6B0.0277 (6)0.0199 (5)0.0278 (6)0.0083 (4)−0.0003 (5)−0.0044 (4)
C7B0.0218 (5)0.0311 (6)0.0238 (6)0.0065 (4)0.0022 (4)−0.0093 (5)
C8B0.0260 (6)0.0360 (7)0.0211 (6)0.0051 (5)0.0085 (5)−0.0033 (5)
C9B0.0179 (4)0.0207 (5)0.0143 (5)−0.0006 (4)0.0001 (4)0.0015 (4)
S1A—C1A1.8171 (12)S1B—C4B1.8088 (11)
S1A—C4A1.8330 (10)S1B—C1B1.8183 (12)
S2A—C4A1.8119 (11)S2B—C3B1.8123 (13)
S2A—C3A1.8227 (12)S2B—C4B1.8329 (10)
S3A—C6A1.8185 (13)S3B—C5B1.8079 (11)
S3A—C5A1.8207 (11)S3B—C6B1.8165 (13)
S4A—C5A1.8099 (11)S4B—C5B1.8206 (11)
S4A—C8A1.8162 (13)S4B—C8B1.8218 (13)
O1A—C9A1.2013 (15)O1B—C9B1.2052 (14)
C1A—C2A1.5222 (16)C1B—C2B1.5200 (19)
C1A—H1AA0.9700C1B—H1BA0.9700
C1A—H1AB0.9700C1B—H1BB0.9700
C2A—C3A1.5193 (16)C2B—C3B1.524 (2)
C2A—H2AA0.9700C2B—H2BA0.9700
C2A—H2AB0.9700C2B—H2BB0.9700
C3A—H3AA0.9700C3B—H3BA0.9700
C3A—H3AB0.9700C3B—H3BB0.9700
C4A—C9A1.5287 (15)C4B—C9B1.5197 (16)
C4A—C5A1.5350 (15)C4B—C5B1.5333 (15)
C5A—H5AA0.9800C5B—H5BA0.9800
C6A—C7A1.5177 (19)C6B—C7B1.5159 (19)
C6A—H6AA0.9700C6B—H6BA0.9700
C6A—H6AB0.9700C6B—H6BB0.9700
C7A—C8A1.5210 (19)C7B—C8B1.520 (2)
C7A—H7AA0.9700C7B—H7BA0.9700
C7A—H7AB0.9700C7B—H7BB0.9700
C8A—H8AA0.9700C8B—H8BA0.9700
C8A—H8AB0.9700C8B—H8BB0.9700
C9A—H9AA0.9300C9B—H9BA0.9300
C1A—S1A—C4A100.07 (5)C4B—S1B—C1B102.44 (5)
C4A—S2A—C3A102.32 (5)C3B—S2B—C4B99.53 (5)
C6A—S3A—C5A97.44 (6)C5B—S3B—C6B97.30 (6)
C5A—S4A—C8A96.48 (5)C5B—S4B—C8B97.18 (6)
C2A—C1A—S1A112.77 (8)C2B—C1B—S1B114.71 (9)
C2A—C1A—H1AA109.0C2B—C1B—H1BA108.6
S1A—C1A—H1AA109.0S1B—C1B—H1BA108.6
C2A—C1A—H1AB109.0C2B—C1B—H1BB108.6
S1A—C1A—H1AB109.0S1B—C1B—H1BB108.6
H1AA—C1A—H1AB107.8H1BA—C1B—H1BB107.6
C3A—C2A—C1A113.07 (9)C1B—C2B—C3B114.09 (11)
C3A—C2A—H2AA109.0C1B—C2B—H2BA108.7
C1A—C2A—H2AA109.0C3B—C2B—H2BA108.7
C3A—C2A—H2AB109.0C1B—C2B—H2BB108.7
C1A—C2A—H2AB109.0C3B—C2B—H2BB108.7
H2AA—C2A—H2AB107.8H2BA—C2B—H2BB107.6
C2A—C3A—S2A114.46 (9)C2B—C3B—S2B113.05 (9)
C2A—C3A—H3AA108.6C2B—C3B—H3BA109.0
S2A—C3A—H3AA108.6S2B—C3B—H3BA109.0
C2A—C3A—H3AB108.6C2B—C3B—H3BB109.0
S2A—C3A—H3AB108.6S2B—C3B—H3BB109.0
H3AA—C3A—H3AB107.6H3BA—C3B—H3BB107.8
C9A—C4A—C5A106.84 (8)C9B—C4B—C5B107.55 (9)
C9A—C4A—S2A114.46 (8)C9B—C4B—S1B114.83 (8)
C5A—C4A—S2A110.63 (7)C5B—C4B—S1B110.18 (7)
C9A—C4A—S1A103.39 (7)C9B—C4B—S2B102.57 (7)
C5A—C4A—S1A107.36 (7)C5B—C4B—S2B107.74 (7)
S2A—C4A—S1A113.58 (5)S1B—C4B—S2B113.45 (6)
C4A—C5A—S4A113.09 (7)C4B—C5B—S3B112.57 (7)
C4A—C5A—S3A109.25 (7)C4B—C5B—S4B108.94 (7)
S4A—C5A—S3A113.55 (6)S3B—C5B—S4B113.13 (6)
C4A—C5A—H5AA106.8C4B—C5B—H5BA107.3
S4A—C5A—H5AA106.8S3B—C5B—H5BA107.3
S3A—C5A—H5AA106.8S4B—C5B—H5BA107.3
C7A—C6A—S3A114.14 (8)C7B—C6B—S3B114.68 (9)
C7A—C6A—H6AA108.7C7B—C6B—H6BA108.6
S3A—C6A—H6AA108.7S3B—C6B—H6BA108.6
C7A—C6A—H6AB108.7C7B—C6B—H6BB108.6
S3A—C6A—H6AB108.7S3B—C6B—H6BB108.6
H6AA—C6A—H6AB107.6H6BA—C6B—H6BB107.6
C6A—C7A—C8A113.48 (10)C6B—C7B—C8B114.05 (11)
C6A—C7A—H7AA108.9C6B—C7B—H7BA108.7
C8A—C7A—H7AA108.9C8B—C7B—H7BA108.7
C6A—C7A—H7AB108.9C6B—C7B—H7BB108.7
C8A—C7A—H7AB108.9C8B—C7B—H7BB108.7
H7AA—C7A—H7AB107.7H7BA—C7B—H7BB107.6
C7A—C8A—S4A114.41 (10)C7B—C8B—S4B113.28 (9)
C7A—C8A—H8AA108.7C7B—C8B—H8BA108.9
S4A—C8A—H8AA108.7S4B—C8B—H8BA108.9
C7A—C8A—H8AB108.7C7B—C8B—H8BB108.9
S4A—C8A—H8AB108.7S4B—C8B—H8BB108.9
H8AA—C8A—H8AB107.6H8BA—C8B—H8BB107.7
O1A—C9A—C4A125.78 (11)O1B—C9B—C4B125.14 (11)
O1A—C9A—H9AA117.1O1B—C9B—H9BA117.4
C4A—C9A—H9AA117.1C4B—C9B—H9BA117.4
C4A—S1A—C1A—C2A−61.63 (9)C4B—S1B—C1B—C2B−53.25 (11)
S1A—C1A—C2A—C3A69.59 (12)S1B—C1B—C2B—C3B62.79 (14)
C1A—C2A—C3A—S2A−65.11 (12)C1B—C2B—C3B—S2B−68.27 (13)
C4A—S2A—C3A—C2A54.44 (10)C4B—S2B—C3B—C2B61.78 (10)
C3A—S2A—C4A—C9A64.43 (9)C1B—S1B—C4B—C9B−62.56 (9)
C3A—S2A—C4A—C5A−174.81 (7)C1B—S1B—C4B—C5B175.84 (8)
C3A—S2A—C4A—S1A−54.00 (7)C1B—S1B—C4B—S2B54.96 (7)
C1A—S1A—C4A—C9A−67.55 (8)C3B—S2B—C4B—C9B65.98 (8)
C1A—S1A—C4A—C5A179.71 (7)C3B—S2B—C4B—C5B179.29 (8)
C1A—S1A—C4A—S2A57.08 (7)C3B—S2B—C4B—S1B−58.47 (7)
C9A—C4A—C5A—S4A−171.08 (7)C9B—C4B—C5B—S3B169.01 (7)
S2A—C4A—C5A—S4A63.73 (9)S1B—C4B—C5B—S3B−65.16 (8)
S1A—C4A—C5A—S4A−60.71 (8)S2B—C4B—C5B—S3B59.08 (8)
C9A—C4A—C5A—S3A61.41 (9)C9B—C4B—C5B—S4B−64.66 (9)
S2A—C4A—C5A—S3A−63.79 (8)S1B—C4B—C5B—S4B61.17 (8)
S1A—C4A—C5A—S3A171.78 (5)S2B—C4B—C5B—S4B−174.59 (5)
C8A—S4A—C5A—C4A170.50 (8)C6B—S3B—C5B—C4B−172.25 (8)
C8A—S4A—C5A—S3A−64.27 (7)C6B—S3B—C5B—S4B63.71 (7)
C6A—S3A—C5A—C4A−168.90 (7)C8B—S4B—C5B—C4B169.19 (8)
C6A—S3A—C5A—S4A63.85 (7)C8B—S4B—C5B—S3B−64.81 (7)
C5A—S3A—C6A—C7A−59.07 (10)C5B—S3B—C6B—C7B−59.23 (10)
S3A—C6A—C7A—C8A64.76 (13)S3B—C6B—C7B—C8B64.90 (14)
C6A—C7A—C8A—S4A−66.24 (13)C6B—C7B—C8B—S4B−65.45 (14)
C5A—S4A—C8A—C7A61.09 (10)C5B—S4B—C8B—C7B60.64 (11)
C5A—C4A—C9A—O1A−140.54 (12)C5B—C4B—C9B—O1B141.54 (11)
S2A—C4A—C9A—O1A−17.70 (15)S1B—C4B—C9B—O1B18.52 (15)
S1A—C4A—C9A—O1A106.35 (12)S2B—C4B—C9B—O1B−105.02 (12)
D—H···AD—HH···AD···AD—H···A
C2A—H2AB···O1Ai0.972.513.3530 (15)146
C3A—H3AB···O1A0.972.483.1024 (16)122
C6A—H6AB···O1Bii0.972.513.4292 (15)159
C1B—H1BA···O1B0.972.443.0508 (16)121
C2B—H2BA···O1Biii0.972.543.1913 (16)124
C3B—H3BA···S2Aiv0.972.813.5932 (12)138
C7B—H7BA···O1Av0.972.543.3436 (17)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2A—H2AB⋯O1Ai0.972.513.3530 (15)146
C3A—H3AB⋯O1A0.972.483.1024 (16)122
C6A—H6AB⋯O1Bii0.972.513.4292 (15)159
C1B—H1BA⋯O1B0.972.443.0508 (16)121
C2B—H2BA⋯O1Biii0.972.543.1913 (16)124
C3B—H3BA⋯S2Aiv0.972.813.5932 (12)138
C7B—H7BA⋯O1Av0.972.543.3436 (17)140

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  The chemistry of vicinal polycarbonyl compounds.

Authors:  M B Rubin; R Gleiter
Journal:  Chem Rev       Date:  2000-03-08       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  The chemistry of vicinal tricarbonyls and related systems.

Authors:  Harry H Wasserman; Jonathan Parr
Journal:  Acc Chem Res       Date:  2004-09       Impact factor: 22.384

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1.  2-(4-Nitro-phen-yl)-1,3-dithiane.

Authors:  Hoong-Kun Fun; Reza Kia; Annada C Maity; Shyamaprosad Goswami
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-17

2.  7-Nitro-1,2,3,4-tetra-hydro-naphthalene-1-spiro-2'-(1,3-dithiane).

Authors:  Hoong-Kun Fun; Reza Kia; Annada C Maity; Shyamaprosad Goswami
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-17

3.  2-(Pyrene-1-yl)-1,3-dithiane.

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