Literature DB >> 21582599

2-(Pyrene-1-yl)-1,3-dithiane.

Hoong-Kun Fun, Samuel Robinson Jebas, Annada C Maity, Nirmal K Das, Shyamaprasad Goswami.   

Abstract

In the title compound, C(20)H(16)S(2), the pyrene ring is planar [maximum deviation 0.0144 (15) Å] and the dithiane ring adopts a chair conformation. The crystal packing is stabilized by C-H⋯π inter-actions. An intra-molecular C-H⋯S hydrogen bond generates an S(5) ring motif.

Entities:  

Year:  2009        PMID: 21582599      PMCID: PMC2969099          DOI: 10.1107/S1600536809010320

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For thio­nation reactions, see: Goswami & Maity (2008 ▶); Goswami et al. (2009 ▶); Fun et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶). For graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H16S2 M = 320.45 Orthorhombic, a = 7.1424 (1) Å b = 8.6016 (1) Å c = 24.5049 (2) Å V = 1505.48 (3) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 100 K 0.36 × 0.17 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.885, T max = 0.962 29712 measured reflections 6424 independent reflections 5501 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.092 S = 1.05 6424 reflections 199 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 2662 Friedel pairs Flack parameter: 0.03 (5) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809010320/at2745sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010320/at2745Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16S2F(000) = 672
Mr = 320.45Dx = 1.414 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 9340 reflections
a = 7.1424 (1) Åθ = 2.5–33.7°
b = 8.6016 (1) ŵ = 0.35 mm1
c = 24.5049 (2) ÅT = 100 K
V = 1505.48 (3) Å3Block, colourless
Z = 40.36 × 0.17 × 0.11 mm
Bruker SMART APEXII CCD area-detector diffractometer6424 independent reflections
Radiation source: fine-focus sealed tube5501 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 35.1°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −11→11
Tmin = 0.885, Tmax = 0.962k = −13→13
29712 measured reflectionsl = −39→39
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0461P)2 + 0.0807P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.004
6424 reflectionsΔρmax = 0.48 e Å3
199 parametersΔρmin = −0.27 e Å3
0 restraintsAbsolute structure: Flack (1983), 2662 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (5)
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.38288 (5)0.10233 (4)0.977454 (13)0.01668 (8)
S20.68513 (5)−0.07534 (4)1.037145 (12)0.01665 (8)
C10.6709 (2)−0.12016 (15)0.77433 (5)0.0134 (2)
C20.73272 (19)−0.07300 (16)0.82744 (5)0.0131 (2)
C30.9112 (2)−0.00108 (16)0.83308 (5)0.0140 (2)
C41.0265 (2)0.01927 (17)0.78565 (6)0.0173 (3)
H4A1.14430.06400.78940.021*
C50.9675 (2)−0.02513 (17)0.73559 (6)0.0177 (3)
H5A1.0456−0.01070.70570.021*
C60.7869 (2)−0.09392 (16)0.72787 (5)0.0156 (3)
C70.7187 (2)−0.13545 (17)0.67611 (5)0.0180 (3)
H7A0.7932−0.11930.64550.022*
C80.5425 (2)−0.19998 (17)0.66994 (6)0.0190 (3)
H8A0.4998−0.22640.63530.023*
C90.4287 (2)−0.22556 (16)0.71502 (5)0.0180 (3)
H9A0.3102−0.26820.71030.022*
C100.4912 (2)−0.18750 (16)0.76761 (5)0.0145 (2)
C110.3773 (2)−0.21097 (16)0.81490 (5)0.0162 (3)
H11A0.2612−0.25880.81100.019*
C120.4341 (2)−0.16537 (17)0.86520 (5)0.0155 (3)
H12A0.3555−0.18100.89500.019*
C130.61341 (19)−0.09331 (15)0.87345 (5)0.0129 (2)
C140.6739 (2)−0.03780 (15)0.92506 (5)0.0139 (2)
C150.8468 (2)0.03716 (16)0.92932 (5)0.0159 (3)
H15A0.88380.07710.96290.019*
C160.9649 (2)0.05354 (16)0.88468 (5)0.0164 (3)
H16A1.08080.10120.88900.020*
C170.54924 (19)−0.05773 (15)0.97455 (5)0.0142 (2)
H17A0.4780−0.15420.96980.017*
C180.2364 (2)0.03068 (18)1.03263 (5)0.0201 (3)
H18A0.13660.10491.03910.024*
H18B0.1791−0.06631.02130.024*
C190.3411 (2)0.00340 (18)1.08623 (5)0.0184 (3)
H19A0.39930.10011.09750.022*
H19B0.2516−0.02591.11420.022*
C200.4911 (2)−0.12196 (17)1.08241 (5)0.0174 (3)
H20A0.4331−0.21751.06990.021*
H20B0.5404−0.14101.11870.021*
U11U22U33U12U13U23
S10.01679 (16)0.01854 (16)0.01470 (14)0.00372 (13)−0.00236 (11)0.00034 (12)
S20.01684 (15)0.02099 (17)0.01214 (13)0.00328 (14)−0.00233 (11)0.00104 (12)
C10.0165 (6)0.0116 (5)0.0120 (5)0.0012 (5)−0.0008 (4)−0.0008 (4)
C20.0142 (6)0.0121 (6)0.0131 (5)0.0004 (5)−0.0012 (4)0.0010 (4)
C30.0131 (6)0.0128 (6)0.0160 (5)0.0010 (5)−0.0021 (5)0.0015 (4)
C40.0148 (7)0.0169 (6)0.0203 (6)0.0002 (5)0.0011 (5)0.0020 (5)
C50.0171 (7)0.0185 (7)0.0177 (6)0.0019 (5)0.0038 (5)0.0024 (5)
C60.0174 (6)0.0145 (6)0.0148 (5)0.0021 (5)0.0004 (4)0.0012 (5)
C70.0236 (7)0.0177 (7)0.0128 (6)0.0025 (5)0.0003 (5)0.0001 (5)
C80.0256 (7)0.0182 (7)0.0133 (6)0.0021 (6)−0.0034 (5)−0.0019 (5)
C90.0216 (7)0.0158 (6)0.0166 (6)−0.0008 (5)−0.0035 (5)−0.0020 (5)
C100.0178 (6)0.0124 (6)0.0134 (5)0.0001 (5)−0.0017 (5)−0.0019 (4)
C110.0159 (6)0.0169 (6)0.0159 (6)−0.0033 (5)−0.0015 (5)−0.0010 (5)
C120.0159 (6)0.0164 (6)0.0141 (5)−0.0028 (5)0.0002 (5)0.0007 (5)
C130.0153 (6)0.0103 (5)0.0130 (5)0.0004 (5)−0.0015 (4)0.0001 (4)
C140.0151 (6)0.0133 (6)0.0133 (5)0.0012 (5)−0.0021 (5)0.0003 (4)
C150.0181 (7)0.0157 (6)0.0138 (5)−0.0010 (5)−0.0043 (5)−0.0001 (5)
C160.0147 (6)0.0160 (6)0.0186 (6)−0.0016 (5)−0.0027 (5)0.0016 (5)
C170.0163 (6)0.0148 (6)0.0115 (5)0.0014 (5)−0.0024 (4)−0.0008 (4)
C180.0154 (6)0.0269 (7)0.0179 (6)0.0021 (6)−0.0001 (5)−0.0018 (5)
C190.0212 (7)0.0212 (7)0.0128 (5)0.0008 (6)0.0005 (5)−0.0010 (5)
C200.0207 (7)0.0179 (7)0.0136 (5)−0.0005 (6)0.0001 (5)0.0018 (5)
S1—C181.8173 (15)C9—H9A0.9300
S1—C171.8200 (14)C10—C111.4301 (19)
S2—C201.8200 (15)C11—C121.3557 (18)
S2—C171.8214 (13)C11—H11A0.9300
C1—C101.418 (2)C12—C131.4373 (19)
C1—C61.4260 (18)C12—H12A0.9300
C1—C21.4328 (17)C13—C141.4191 (17)
C2—C31.4239 (19)C14—C151.397 (2)
C2—C131.4242 (17)C14—C171.5144 (18)
C3—C161.4024 (18)C15—C161.3884 (19)
C3—C41.4349 (19)C15—H15A0.9300
C4—C51.3521 (19)C16—H16A0.9300
C4—H4A0.9300C17—H17A0.9800
C5—C61.432 (2)C18—C191.5298 (19)
C5—H5A0.9300C18—H18A0.9700
C6—C71.4047 (18)C18—H18B0.9700
C7—C81.384 (2)C19—C201.523 (2)
C7—H7A0.9300C19—H19A0.9700
C8—C91.389 (2)C19—H19B0.9700
C8—H8A0.9300C20—H20A0.9700
C9—C101.4025 (18)C20—H20B0.9700
C18—S1—C1798.54 (7)C13—C12—H12A119.4
C20—S2—C1797.23 (6)C14—C13—C2118.82 (12)
C10—C1—C6119.86 (11)C14—C13—C12122.81 (12)
C10—C1—C2120.01 (12)C2—C13—C12118.34 (11)
C6—C1—C2120.09 (12)C15—C14—C13119.42 (12)
C3—C2—C13120.81 (11)C15—C14—C17120.80 (11)
C3—C2—C1119.16 (12)C13—C14—C17119.77 (12)
C13—C2—C1120.00 (12)C16—C15—C14121.66 (12)
C16—C3—C2118.55 (12)C16—C15—H15A119.2
C16—C3—C4122.18 (13)C14—C15—H15A119.2
C2—C3—C4119.21 (12)C15—C16—C3120.69 (13)
C5—C4—C3121.43 (14)C15—C16—H16A119.7
C5—C4—H4A119.3C3—C16—H16A119.7
C3—C4—H4A119.3C14—C17—S1109.24 (9)
C4—C5—C6121.17 (13)C14—C17—S2111.75 (9)
C4—C5—H5A119.4S1—C17—S2112.20 (7)
C6—C5—H5A119.4C14—C17—H17A107.8
C7—C6—C1118.64 (13)S1—C17—H17A107.8
C7—C6—C5122.46 (12)S2—C17—H17A107.8
C1—C6—C5118.89 (11)C19—C18—S1114.16 (10)
C8—C7—C6121.05 (13)C19—C18—H18A108.7
C8—C7—H7A119.5S1—C18—H18A108.7
C6—C7—H7A119.5C19—C18—H18B108.7
C7—C8—C9120.58 (13)S1—C18—H18B108.7
C7—C8—H8A119.7H18A—C18—H18B107.6
C9—C8—H8A119.7C20—C19—C18113.57 (11)
C8—C9—C10120.51 (14)C20—C19—H19A108.9
C8—C9—H9A119.7C18—C19—H19A108.9
C10—C9—H9A119.7C20—C19—H19B108.9
C9—C10—C1119.35 (13)C18—C19—H19B108.9
C9—C10—C11122.04 (13)H19A—C19—H19B107.7
C1—C10—C11118.60 (11)C19—C20—S2114.65 (10)
C12—C11—C10121.71 (13)C19—C20—H20A108.6
C12—C11—H11A119.1S2—C20—H20A108.6
C10—C11—H11A119.1C19—C20—H20B108.6
C11—C12—C13121.29 (13)S2—C20—H20B108.6
C11—C12—H12A119.4H20A—C20—H20B107.6
C10—C1—C2—C3−178.01 (12)C10—C11—C12—C13−1.0 (2)
C6—C1—C2—C3−0.47 (19)C3—C2—C13—C141.21 (19)
C10—C1—C2—C13−0.20 (19)C1—C2—C13—C14−176.56 (12)
C6—C1—C2—C13177.34 (12)C3—C2—C13—C12179.43 (12)
C13—C2—C3—C16−1.84 (19)C1—C2—C13—C121.66 (19)
C1—C2—C3—C16175.95 (13)C11—C12—C13—C14177.07 (13)
C13—C2—C3—C4−179.16 (13)C11—C12—C13—C2−1.1 (2)
C1—C2—C3—C4−1.37 (19)C2—C13—C14—C150.97 (19)
C16—C3—C4—C5−175.68 (14)C12—C13—C14—C15−177.17 (13)
C2—C3—C4—C51.5 (2)C2—C13—C14—C17179.86 (12)
C3—C4—C5—C60.2 (2)C12—C13—C14—C171.7 (2)
C10—C1—C6—C70.25 (19)C13—C14—C15—C16−2.6 (2)
C2—C1—C6—C7−177.30 (13)C17—C14—C15—C16178.56 (12)
C10—C1—C6—C5179.72 (13)C14—C15—C16—C31.9 (2)
C2—C1—C6—C52.17 (19)C2—C3—C16—C150.3 (2)
C4—C5—C6—C7177.38 (14)C4—C3—C16—C15177.52 (13)
C4—C5—C6—C1−2.1 (2)C15—C14—C17—S193.99 (13)
C1—C6—C7—C80.3 (2)C13—C14—C17—S1−84.88 (13)
C5—C6—C7—C8−179.18 (13)C15—C14—C17—S2−30.77 (16)
C6—C7—C8—C9−0.2 (2)C13—C14—C17—S2150.36 (10)
C7—C8—C9—C10−0.5 (2)C18—S1—C17—C14171.69 (9)
C8—C9—C10—C11.0 (2)C18—S1—C17—S2−63.82 (9)
C8—C9—C10—C11179.45 (13)C20—S2—C17—C14−172.85 (9)
C6—C1—C10—C9−0.88 (19)C20—S2—C17—S164.05 (8)
C2—C1—C10—C9176.67 (13)C17—S1—C18—C1959.16 (12)
C6—C1—C10—C11−179.38 (13)S1—C18—C19—C20−63.42 (15)
C2—C1—C10—C11−1.83 (19)C18—C19—C20—S265.04 (15)
C9—C10—C11—C12−175.99 (14)C17—S2—C20—C19−61.20 (11)
C1—C10—C11—C122.5 (2)
D—H···AD—HH···AD···AD—H···A
C15—H15A···S20.932.653.0416 (13)106
C9—H9A···Cg1i0.932.683.4196 (15)137
C4—H4A···Cg2ii0.932.983.8073 (16)149
C20—H20A···Cg3iii0.972.783.5339 (15)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15A⋯S20.932.653.0416 (13)106
C9—H9ACg1i0.932.683.4196 (15)137
C4—H4ACg2ii0.932.983.8073 (16)149
C20—H20ACg3iii0.972.783.5339 (15)135

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C1–C6 ring, Cg2 is the centroid of the C1/C6–C10 ring and Cg3 is the centroid of the C2/C3/C13–C16 ring.

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