Literature DB >> 21581232

1,3-Di-4-pyridylpropane-4,4'-oxy-dibenzoic acid (1/1).

Guangzhe Li1, Chris Salim, Hirofumi Hinode.   

Abstract

The hydro-thermal reaction of Cd(NO(3))(2)·4H(2)O, 1,3-di-4-pyridylpropane (BPP) and 4,4'-oxydibenzoic acid (OBA) led to the formation of the title compound, C(13)H(14)N(2)·C(14)H(10)O(5). The asymmetric unit consists of one mol-ecule of OBA and one of BPP. In the OBA mol-ecule, one COOH group is nearly planar with its attached benzene ring [dihedral angle = 0.9 (1)°], while the other COOH group is slightly twisted with a dihedral angle of 10.8 (3)°. The carboxyl groups form strong inter-molecular O-H⋯N hydrogen bonds with N atoms of the pyridine rings in BPP, linking the mol-ecules into zigzag chains.

Entities:  

Year:  2008        PMID: 21581232      PMCID: PMC2960149          DOI: 10.1107/S160053680803331X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background see: Belcher et al. (2002 ▶); Hagrman et al. (1999 ▶); Han et al. (2007 ▶); Luan et al. (2005 ▶); Nguyen et al. (2006 ▶); Wang et al. (2005 ▶); Yaghi et al. (1998 ▶). For related structures, see: Dai et al. (2005 ▶); Ma et al. (2006 ▶); Hou et al. (2008 ▶); Lee et al. (2003 ▶); Wang et al. (2008 ▶); Najafpour et al. (2008 ▶). For an idependent determination of this structure, see: Dong et al. (2008 ▶).

Experimental

Crystal data

C13H14N2·C14H10O5 M = 456.48 Triclinic, a = 6.8938 (3) Å b = 11.5869 (6) Å c = 14.9570 (9) Å α = 86.493 (4)° β = 81.157 (4)° γ = 74.016 (3)° V = 1134.67 (10) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.47 × 0.45 × 0.45 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.957, T max = 0.962 8404 measured reflections 5645 independent reflections 2932 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.147 S = 1.01 5645 reflections 307 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXS97; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680803331X/fl2221sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680803331X/fl2221Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2·C14H10O5Z = 2
Mr = 456.48F000 = 480
Triclinic, P1Dx = 1.336 Mg m3
Hall symbol: -P1Melting point: not measured K
a = 6.8938 (3) ÅMo Kα radiation λ = 0.71073 Å
b = 11.5869 (6) ÅCell parameters from 5645 reflections
c = 14.9570 (9) Åθ = 1.8–28.4º
α = 86.493 (4)ºµ = 0.09 mm1
β = 81.157 (4)ºT = 298 (2) K
γ = 74.016 (3)ºBlock, colourless
V = 1134.67 (10) Å30.47 × 0.45 × 0.45 mm
Bruker SMART CCD area-detector diffractometer5645 independent reflections
Radiation source: fine-focus sealed tube2932 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.022
Detector resolution: 9.00cm pixels mm-1θmax = 28.4º
T = 298(2) Kθmin = 1.8º
φ and ω scansh = −8→9
Absorption correction: multi-scan(SADABS; Bruker, 2002)k = −14→15
Tmin = 0.957, Tmax = 0.962l = −19→16
8404 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.147  w = 1/[σ2(Fo2) + (0.0616P)2 + 0.0668P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
5645 reflectionsΔρmax = 0.19 e Å3
307 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.1086 (2)0.38623 (14)0.57527 (11)0.0497 (4)
N20.6799 (2)0.69499 (14)0.97352 (11)0.0497 (4)
C150.0705 (3)0.38146 (18)0.59963 (16)0.0580 (6)
H150.18000.31560.58270.080*
C160.1014 (3)0.46960 (19)0.64881 (16)0.0571 (6)
H160.23010.46230.66400.080*
C17−0.0570 (3)0.56910 (16)0.67593 (13)0.0427 (5)
C18−0.2430 (3)0.57321 (17)0.64994 (14)0.0488 (5)
H18−0.35530.63790.66620.080*
C19−0.2627 (3)0.48237 (19)0.60034 (15)0.0527 (5)
H19−0.38930.48790.58340.080*
C20−0.0312 (3)0.67052 (17)0.72756 (14)0.0508 (5)
H20A−0.15310.69900.77090.080*
H20B−0.02050.73620.68540.080*
C210.1517 (3)0.63922 (18)0.77781 (15)0.0541 (5)
H21A0.14160.57430.82090.080*
H21B0.27470.61120.73500.080*
C220.1678 (3)0.74500 (17)0.82751 (15)0.0538 (5)
H22A0.04540.77080.87100.080*
H22B0.17030.81060.78420.080*
C230.6401 (3)0.60151 (18)0.93963 (15)0.0564 (6)
H230.72500.52520.94830.080*
C240.4788 (3)0.61262 (17)0.89228 (15)0.0539 (6)
H240.45660.54450.87050.080*
C250.3504 (3)0.72434 (17)0.87710 (13)0.0437 (5)
C260.3944 (3)0.82112 (17)0.91119 (15)0.0504 (5)
H260.31400.89860.90220.080*
C270.5568 (3)0.80294 (18)0.95832 (15)0.0528 (5)
H270.58210.86960.98080.080*
O10.6084 (2)−0.16655 (12)0.27513 (10)0.0580 (4)
O20.5302 (2)0.29158 (14)0.50942 (13)0.0798 (6)
O30.8616 (2)0.20798 (13)0.48596 (12)0.0716 (5)
H30.86310.26420.51630.080*
O4−0.1236 (2)−0.11337 (12)0.04949 (11)0.0666 (5)
O5−0.0307 (2)−0.31076 (12)0.07640 (11)0.0603 (4)
H5−0.1219−0.30940.04670.080*
C10.6118 (3)−0.06807 (16)0.32224 (13)0.0440 (5)
C20.4410 (3)0.01727 (18)0.35955 (14)0.0496 (5)
H20.31200.01370.35100.080*
C30.4625 (3)0.10781 (17)0.40961 (14)0.0477 (5)
H3A0.34710.16550.43460.080*
C40.6537 (3)0.11418 (16)0.42333 (13)0.0412 (4)
C50.8235 (3)0.02569 (18)0.38713 (14)0.0487 (5)
H5A0.95240.02750.39720.080*
C60.8041 (3)−0.06484 (17)0.33646 (14)0.0500 (5)
H60.9190−0.12320.31200.080*
C70.6739 (3)0.21355 (17)0.47726 (14)0.0481 (5)
C80.4451 (3)−0.16717 (17)0.23154 (13)0.0454 (5)
C90.3450 (3)−0.07097 (17)0.18192 (14)0.0519 (5)
H90.37820.00180.18020.080*
C100.1958 (3)−0.08367 (16)0.13509 (14)0.0486 (5)
H100.1277−0.01880.10190.080*
C110.1450 (3)−0.19174 (16)0.13651 (13)0.0408 (4)
C120.2458 (3)−0.28742 (16)0.18693 (14)0.0481 (5)
H120.2126−0.36020.18890.080*
C130.3958 (3)−0.27513 (17)0.23433 (15)0.0513 (5)
H130.4635−0.33960.26810.080*
C14−0.0170 (3)−0.20004 (17)0.08383 (13)0.0442 (5)
U11U22U33U12U13U23
N10.0480 (10)0.0533 (10)0.0517 (11)−0.0151 (8)−0.0135 (8)−0.0097 (8)
N20.0498 (10)0.0505 (10)0.0547 (11)−0.0163 (8)−0.0186 (8)−0.0058 (8)
C150.0486 (12)0.0560 (13)0.0700 (16)−0.0095 (10)−0.0119 (11)−0.0195 (11)
C160.0407 (11)0.0625 (13)0.0725 (15)−0.0109 (10)−0.0191 (10)−0.0214 (11)
C170.0419 (10)0.0467 (11)0.0425 (11)−0.0126 (9)−0.0128 (9)−0.0054 (8)
C180.0422 (11)0.0497 (11)0.0563 (13)−0.0094 (9)−0.0166 (10)−0.0059 (9)
C190.0462 (11)0.0579 (13)0.0600 (14)−0.0157 (10)−0.0210 (10)−0.0052 (10)
C200.0483 (11)0.0509 (12)0.0578 (13)−0.0129 (9)−0.0184 (10)−0.0124 (10)
C210.0516 (12)0.0544 (12)0.0625 (14)−0.0151 (10)−0.0207 (10)−0.0132 (10)
C220.0558 (12)0.0519 (12)0.0594 (14)−0.0136 (10)−0.0236 (10)−0.0101 (10)
C230.0604 (13)0.0476 (12)0.0682 (15)−0.0155 (10)−0.0284 (11)−0.0020 (10)
C240.0617 (13)0.0434 (11)0.0655 (15)−0.0189 (10)−0.0251 (11)−0.0083 (10)
C250.0470 (11)0.0456 (11)0.0423 (11)−0.0156 (9)−0.0111 (9)−0.0052 (8)
C260.0489 (11)0.0431 (11)0.0625 (14)−0.0116 (9)−0.0165 (10)−0.0099 (9)
C270.0516 (12)0.0496 (12)0.0635 (14)−0.0171 (10)−0.0155 (10)−0.0157 (10)
O10.0535 (8)0.0512 (8)0.0755 (11)−0.0093 (6)−0.0305 (7)−0.0179 (7)
O20.0523 (9)0.0721 (11)0.1135 (15)0.0026 (8)−0.0246 (9)−0.0481 (10)
O30.0488 (9)0.0740 (10)0.0991 (13)−0.0148 (7)−0.0181 (8)−0.0448 (9)
O40.0742 (10)0.0471 (8)0.0893 (12)−0.0147 (7)−0.0498 (9)0.0038 (8)
O50.0661 (9)0.0437 (8)0.0821 (11)−0.0164 (7)−0.0396 (8)−0.0061 (7)
C10.0472 (11)0.0451 (11)0.0449 (12)−0.0148 (9)−0.0160 (9)−0.0064 (8)
C20.0375 (10)0.0591 (12)0.0571 (13)−0.0141 (9)−0.0171 (9)−0.0078 (10)
C30.0368 (10)0.0536 (12)0.0527 (13)−0.0070 (9)−0.0124 (9)−0.0098 (9)
C40.0405 (10)0.0450 (10)0.0398 (11)−0.0110 (8)−0.0104 (8)−0.0057 (8)
C50.0359 (10)0.0578 (12)0.0559 (13)−0.0147 (9)−0.0084 (9)−0.0147 (10)
C60.0392 (10)0.0552 (12)0.0563 (13)−0.0104 (9)−0.0074 (9)−0.0156 (10)
C70.0460 (11)0.0496 (12)0.0513 (13)−0.0100 (10)−0.0171 (10)−0.0086 (9)
C80.0463 (11)0.0472 (11)0.0471 (12)−0.0127 (9)−0.0166 (9)−0.0089 (9)
C90.0659 (13)0.0433 (11)0.0557 (13)−0.0234 (10)−0.0220 (11)0.0014 (9)
C100.0596 (12)0.0423 (11)0.0493 (12)−0.0155 (9)−0.0212 (10)0.0001 (9)
C110.0438 (10)0.0393 (10)0.0418 (11)−0.0115 (8)−0.0109 (9)−0.0059 (8)
C120.0533 (11)0.0383 (10)0.0581 (13)−0.0142 (9)−0.0199 (10)−0.0021 (9)
C130.0551 (12)0.0412 (11)0.0613 (14)−0.0104 (9)−0.0256 (10)0.0009 (9)
C140.0453 (11)0.0411 (11)0.0484 (12)−0.0112 (9)−0.0118 (9)−0.0071 (9)
N1—C151.326 (2)O1—C11.385 (2)
N1—C191.337 (2)O1—C81.387 (2)
N2—C271.333 (2)O2—C71.202 (2)
N2—C231.334 (2)O3—C71.304 (2)
C15—C161.375 (3)O3—H30.8200
C15—H150.9300O4—C141.208 (2)
C16—C171.383 (3)O5—C141.325 (2)
C16—H160.9300O5—H50.8200
C17—C181.384 (2)C1—C21.379 (3)
C17—C201.509 (2)C1—C61.385 (2)
C18—C191.372 (3)C2—C31.378 (3)
C18—H180.9300C2—H20.9300
C19—H190.9300C3—C41.387 (2)
C20—C211.514 (3)C3—H3A0.9300
C20—H20A0.9700C4—C51.388 (2)
C20—H20B0.9700C4—C71.494 (2)
C21—C221.510 (3)C5—C61.378 (2)
C21—H21A0.9700C5—H5A0.9300
C21—H21B0.9700C6—H60.9300
C22—C251.514 (3)C8—C91.379 (3)
C22—H22A0.9700C8—C131.380 (3)
C22—H22B0.9700C9—C101.374 (3)
C23—C241.381 (3)C9—H90.9300
C23—H230.9300C10—C111.388 (2)
C24—C251.380 (3)C10—H100.9300
C24—H240.9300C11—C121.384 (3)
C25—C261.384 (2)C11—C141.489 (2)
C26—C271.374 (3)C12—C131.382 (3)
C26—H260.9300C12—H120.9300
C27—H270.9300C13—H130.9300
C15—N1—C19117.07 (16)N2—C27—H27118.2
C27—N2—C23116.59 (16)C26—C27—H27118.2
N1—C15—C16122.91 (18)C1—O1—C8122.02 (14)
N1—C15—H15118.5C7—O3—H3109.5
C16—C15—H15118.5C14—O5—H5109.5
C15—C16—C17120.72 (17)C2—C1—C6120.44 (16)
C15—C16—H16119.6C2—C1—O1124.67 (16)
C17—C16—H16119.6C6—C1—O1114.70 (16)
C16—C17—C18115.85 (17)C3—C2—C1119.62 (17)
C16—C17—C20123.19 (16)C3—C2—H2120.2
C18—C17—C20120.92 (16)C1—C2—H2120.2
C19—C18—C17120.35 (17)C2—C3—C4120.95 (17)
C19—C18—H18119.8C2—C3—H3A119.5
C17—C18—H18119.8C4—C3—H3A119.5
N1—C19—C18123.10 (17)C3—C4—C5118.54 (16)
N1—C19—H19118.4C3—C4—C7120.15 (16)
C18—C19—H19118.4C5—C4—C7121.30 (16)
C17—C20—C21115.27 (16)C6—C5—C4121.02 (16)
C17—C20—H20A108.5C6—C5—H5A119.5
C21—C20—H20A108.5C4—C5—H5A119.5
C17—C20—H20B108.5C5—C6—C1119.39 (17)
C21—C20—H20B108.5C5—C6—H6120.3
H20A—C20—H20B107.5C1—C6—H6120.3
C22—C21—C20112.25 (16)O2—C7—O3123.16 (17)
C22—C21—H21A109.2O2—C7—C4122.99 (17)
C20—C21—H21A109.2O3—C7—C4113.85 (16)
C22—C21—H21B109.2C9—C8—C13120.40 (17)
C20—C21—H21B109.2C9—C8—O1123.73 (17)
H21A—C21—H21B107.9C13—C8—O1115.68 (17)
C21—C22—C25116.41 (17)C10—C9—C8119.34 (17)
C21—C22—H22A108.2C10—C9—H9120.3
C25—C22—H22A108.2C8—C9—H9120.3
C21—C22—H22B108.2C9—C10—C11121.15 (18)
C25—C22—H22B108.2C9—C10—H10119.4
H22A—C22—H22B107.3C11—C10—H10119.4
N2—C23—C24123.12 (18)C12—C11—C10118.96 (17)
N2—C23—H23118.4C12—C11—C14122.47 (17)
C24—C23—H23118.4C10—C11—C14118.57 (17)
C25—C24—C23120.29 (17)C13—C12—C11120.16 (17)
C25—C24—H24119.9C13—C12—H12119.9
C23—C24—H24119.9C11—C12—H12119.9
C24—C25—C26116.32 (17)C8—C13—C12119.99 (18)
C24—C25—C22124.00 (16)C8—C13—H13120.0
C26—C25—C22119.67 (17)C12—C13—H13120.0
C27—C26—C25120.08 (18)O4—C14—O5123.14 (17)
C27—C26—H26120.0O4—C14—C11122.70 (17)
C25—C26—H26120.0O5—C14—C11114.15 (16)
N2—C27—C26123.58 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3···N1i0.821.782.598 (2)174.0
O5—H5···N2ii0.821.872.685 (2)176.9
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯N1i0.821.782.598 (2)174
O5—H5⋯N2ii0.821.872.685 (2)177

Symmetry codes: (i) ; (ii) .

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1.  1,3-Di-4-pyridylpropane-4,4'-oxy-dibenzoic acid (1/1).

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