Literature DB >> 21581233

1,3-Di-4-pyridylpropane-4,4'-oxy-dibenzoic acid (1/1).

Wen-Wen Dong, Dong-Sheng Li, Jun Zhao, Long Tang, Xiang-Yang Hou.   

Abstract

In the title compound, C(13)H(14)N(2)·C(14)H(10)O(5), a 1:1 cocrystal of 1,3-di-4-pyridylpropane (bpp) and 4,4'-oxydibenzoic acid (H(2)oba), the dihedral angle between the two benzene rings of the flexible H(2)oba mol-ecule is 57.07 (1)°; the two pyridine rings of bpp make a dihedral angle of 27.52 (1)°. Strong inter-molecular O-H⋯N hydrogen bonds link the mol-ecules into chains, which are then linked into a three-dimensional network through inter-molecular C-H⋯O and π-π stacking inter-actions [centroid-centroid distance = 3.7838 (3) Å].

Entities:  

Year:  2008        PMID: 21581233      PMCID: PMC2959904          DOI: 10.1107/S1600536808034971

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of co-crystallization reactions in developing new methodologies in supra­molecular synthesis, see: Desiraju (2003 ▶); Shan et al. (2002 ▶). For hydrogen bonding and π–π stacking in mol­ecular synthesis, see: Shattock et al. (2005 ▶). For a related structure, see: Ma et al. (2006 ▶). An independent determination of this structure is reported in the preceeding paper (Li et al., 2008 ▶).

Experimental

Crystal data

C13H14N2·C14H10O5 M = 456.48 Triclinic, a = 6.8927 (12) Å b = 11.5788 (19) Å c = 14.974 (3) Å α = 86.638 (3)° β = 81.205 (3)° γ = 73.963 (3)° V = 1134.9 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.38 × 0.20 × 0.16 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.966, T max = 0.985 5767 measured reflections 3965 independent reflections 1530 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.232 S = 1.01 3965 reflections 309 parameters H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808034971/fl2224sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034971/fl2224Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H24N2O5Z = 2
Mr = 456.48F000 = 480
Triclinic, P1Dx = 1.336 Mg m3
a = 6.8927 (12) ÅMo Kα radiation λ = 0.71073 Å
b = 11.5788 (19) Åθ = 1.8–25.1º
c = 14.974 (3) ŵ = 0.09 mm1
α = 86.638 (3)ºT = 293 (2) K
β = 81.205 (3)ºPrism, colorless
γ = 73.963 (3)º0.38 × 0.20 × 0.16 mm
V = 1134.9 (3) Å3
Bruker SMART CCD diffractometer3965 independent reflections
Radiation source: fine-focus sealed tube1530 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.034
T = 293(2) Kθmax = 25.1º
φ and ω scansθmin = 1.8º
Absorption correction: Multi-scan(SADABS; Sheldrick, 1996)h = −4→8
Tmin = 0.966, Tmax = 0.985k = −11→13
5767 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.074H-atom parameters constrained
wR(F2) = 0.232  w = 1/[σ2(Fo2) + (0.09P)2 + 0.05P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
3965 reflectionsΔρmax = 0.64 e Å3
309 parametersΔρmin = −0.22 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.1091 (7)−0.1160 (4)0.5739 (3)0.0694 (12)
N20.6798 (6)0.1948 (4)0.9734 (2)0.0664 (12)
O10.6076 (5)0.3326 (3)0.2752 (2)0.0738 (10)
O2−0.0318 (6)0.1895 (3)0.0761 (2)0.0776 (11)
H2−0.12620.19110.04830.116*
O3−0.1240 (6)0.3872 (3)0.0493 (2)0.0835 (12)
O40.5299 (6)0.7923 (3)0.5091 (3)0.0970 (13)
O50.8627 (5)0.7071 (3)0.4860 (3)0.0918 (12)
H50.86520.76420.51520.138*
C10.6402 (8)0.1023 (4)0.9399 (3)0.0731 (15)
H10.72520.02590.94850.088*
C20.4779 (8)0.1132 (4)0.8923 (3)0.0720 (15)
H2A0.45520.04490.87110.086*
C30.3505 (7)0.2248 (4)0.8766 (3)0.0563 (12)
C40.3945 (7)0.3207 (4)0.9109 (3)0.0665 (14)
H40.31320.39820.90260.080*
C50.5569 (8)0.3026 (4)0.9570 (3)0.0717 (15)
H5A0.58360.36960.97830.086*
C60.1679 (7)0.2448 (4)0.8272 (3)0.0726 (15)
H6A0.04570.27120.87070.087*
H6B0.17050.31000.78370.087*
C70.1503 (7)0.1392 (4)0.7780 (3)0.0723 (15)
H7A0.13950.07490.82130.087*
H7B0.27350.11030.73550.087*
C8−0.0324 (7)0.1698 (4)0.7273 (3)0.0658 (14)
H8A−0.15470.19870.77030.079*
H8B−0.02140.23510.68490.079*
C9−0.0580 (7)0.0684 (4)0.6761 (3)0.0579 (13)
C10−0.2435 (7)0.0733 (4)0.6501 (3)0.0617 (13)
H10−0.35570.13810.66640.074*
C11−0.2627 (8)−0.0177 (5)0.6000 (3)0.0684 (14)
H11−0.3895−0.01120.58290.082*
C120.0675 (8)−0.1175 (4)0.5988 (3)0.0741 (15)
H120.1782−0.18290.58180.089*
C130.1000 (8)−0.0295 (4)0.6480 (3)0.0710 (15)
H130.2295−0.03650.66220.085*
C140.1947 (7)0.4155 (4)0.1356 (3)0.0669 (14)
H140.12440.48080.10350.080*
C150.3456 (8)0.4285 (4)0.1817 (3)0.0679 (14)
H150.38110.50070.17870.081*
C160.4428 (7)0.3329 (4)0.2322 (3)0.0600 (13)
C170.3950 (7)0.2251 (4)0.2337 (3)0.0686 (15)
H170.46330.16020.26680.082*
C180.2452 (7)0.2132 (4)0.1858 (3)0.0642 (14)
H180.21230.14030.18760.077*
C190.1451 (7)0.3072 (4)0.1360 (3)0.0520 (12)
C20−0.0181 (8)0.3011 (5)0.0835 (3)0.0645 (14)
C210.6111 (8)0.4317 (4)0.3224 (3)0.0572 (12)
C220.4418 (8)0.5167 (4)0.3598 (3)0.0655 (14)
H220.31260.51290.35180.079*
C230.4631 (7)0.6079 (4)0.4093 (3)0.0618 (13)
H230.34830.66670.43360.074*
C240.6554 (7)0.6123 (4)0.4232 (3)0.0533 (12)
C250.8227 (7)0.5255 (4)0.3868 (3)0.0659 (14)
H250.95190.52760.39620.079*
C260.8021 (7)0.4350 (4)0.3364 (3)0.0656 (13)
H260.91680.37630.31200.079*
C270.6727 (9)0.7134 (5)0.4775 (3)0.0678 (14)
U11U22U33U12U13U23
N10.055 (3)0.088 (3)0.072 (3)−0.025 (3)−0.024 (2)0.011 (2)
N20.069 (3)0.065 (3)0.075 (3)−0.024 (2)−0.024 (2)−0.006 (2)
O10.070 (2)0.069 (2)0.090 (3)−0.0147 (18)−0.036 (2)−0.0197 (18)
O20.090 (3)0.060 (2)0.098 (3)−0.0266 (19)−0.045 (2)−0.0052 (17)
O30.088 (3)0.066 (2)0.105 (3)−0.015 (2)−0.055 (2)0.007 (2)
O40.073 (3)0.086 (3)0.132 (3)−0.001 (2)−0.034 (3)−0.050 (2)
O50.071 (3)0.096 (3)0.119 (3)−0.026 (2)−0.027 (2)−0.041 (2)
C10.084 (4)0.060 (3)0.086 (4)−0.025 (3)−0.032 (3)−0.002 (3)
C20.086 (4)0.061 (3)0.082 (4)−0.027 (3)−0.035 (3)−0.005 (3)
C30.058 (3)0.056 (3)0.058 (3)−0.019 (3)−0.011 (3)−0.011 (2)
C40.058 (3)0.057 (3)0.087 (4)−0.013 (3)−0.019 (3)−0.013 (3)
C50.073 (4)0.059 (3)0.089 (4)−0.019 (3)−0.022 (3)−0.015 (3)
C60.068 (4)0.072 (3)0.083 (4)−0.021 (3)−0.020 (3)−0.014 (3)
C70.074 (4)0.074 (3)0.080 (4)−0.027 (3)−0.026 (3)−0.013 (3)
C80.062 (3)0.072 (3)0.069 (3)−0.018 (3)−0.025 (3)−0.012 (3)
C90.058 (4)0.067 (3)0.053 (3)−0.018 (3)−0.020 (3)−0.004 (2)
C100.059 (4)0.059 (3)0.071 (3)−0.012 (3)−0.026 (3)−0.008 (2)
C110.054 (4)0.080 (3)0.079 (4)−0.019 (3)−0.032 (3)−0.001 (3)
C120.062 (4)0.071 (3)0.084 (4)−0.007 (3)−0.008 (3)−0.019 (3)
C130.055 (4)0.075 (3)0.085 (4)−0.010 (3)−0.021 (3)−0.026 (3)
C140.078 (4)0.059 (3)0.070 (3)−0.019 (3)−0.030 (3)−0.001 (2)
C150.079 (4)0.063 (3)0.077 (4)−0.033 (3)−0.029 (3)−0.003 (3)
C160.066 (4)0.059 (3)0.062 (3)−0.018 (3)−0.024 (3)−0.009 (2)
C170.075 (4)0.056 (3)0.080 (4)−0.012 (3)−0.034 (3)−0.005 (3)
C180.074 (4)0.047 (3)0.080 (4)−0.021 (3)−0.027 (3)−0.003 (2)
C190.055 (3)0.050 (3)0.055 (3)−0.016 (2)−0.014 (2)−0.010 (2)
C200.066 (4)0.063 (3)0.071 (4)−0.022 (3)−0.019 (3)−0.007 (3)
C210.062 (4)0.058 (3)0.059 (3)−0.021 (3)−0.021 (3)−0.002 (2)
C220.049 (3)0.079 (3)0.075 (4)−0.021 (3)−0.019 (3)−0.009 (3)
C230.056 (3)0.060 (3)0.068 (3)−0.002 (3)−0.026 (3)−0.011 (2)
C240.057 (3)0.060 (3)0.050 (3)−0.020 (3)−0.017 (3)−0.005 (2)
C250.050 (3)0.078 (3)0.075 (4)−0.024 (3)−0.008 (3)−0.020 (3)
C260.047 (3)0.072 (3)0.076 (4)−0.009 (3)−0.010 (3)−0.018 (3)
C270.065 (4)0.070 (4)0.075 (4)−0.019 (3)−0.025 (3)−0.007 (3)
N1—C121.321 (6)C9—C131.372 (6)
N1—C111.352 (6)C9—C101.379 (5)
N2—C11.320 (5)C10—C111.375 (6)
N2—C51.333 (5)C10—H100.9300
O1—C161.387 (5)C11—H110.9300
O1—C211.390 (5)C12—C131.376 (6)
O2—C201.333 (5)C12—H120.9300
O2—H20.8200C13—H130.9300
O3—C201.201 (5)C14—C151.378 (6)
O4—C271.200 (5)C14—C191.387 (5)
O5—C271.317 (6)C14—H140.9300
O5—H50.8200C15—C161.376 (6)
C1—C21.388 (6)C15—H150.9300
C1—H10.9300C16—C171.374 (6)
C2—C31.377 (6)C17—C181.384 (6)
C2—H2A0.9300C17—H170.9300
C3—C41.374 (5)C18—C191.365 (6)
C3—C61.513 (6)C18—H180.9300
C4—C51.365 (6)C19—C201.487 (6)
C4—H40.9300C21—C221.369 (6)
C5—H5A0.9300C21—C261.375 (6)
C6—C71.505 (5)C22—C231.378 (5)
C6—H6A0.9700C22—H220.9300
C6—H6B0.9700C23—C241.387 (6)
C7—C81.518 (6)C23—H230.9300
C7—H7A0.9700C24—C251.367 (6)
C7—H7B0.9700C24—C271.505 (6)
C8—C91.502 (5)C25—C261.377 (6)
C8—H8A0.9700C25—H250.9300
C8—H8B0.9700C26—H260.9300
C12—N1—C11114.4 (4)N1—C12—H12117.5
C1—N2—C5116.0 (4)C13—C12—H12117.5
C16—O1—C21121.5 (4)C9—C13—C12120.3 (5)
C20—O2—H2109.5C9—C13—H13119.9
C27—O5—H5109.5C12—C13—H13119.9
N2—C1—C2123.2 (5)C15—C14—C19121.6 (4)
N2—C1—H1118.4C15—C14—H14119.2
C2—C1—H1118.4C19—C14—H14119.2
C3—C2—C1120.3 (4)C16—C15—C14118.8 (4)
C3—C2—H2A119.9C16—C15—H15120.6
C1—C2—H2A119.9C14—C15—H15120.6
C4—C3—C2116.0 (4)C17—C16—C15120.3 (4)
C4—C3—C6120.2 (4)C17—C16—O1115.6 (4)
C2—C3—C6123.8 (4)C15—C16—O1123.7 (4)
C5—C4—C3120.2 (4)C16—C17—C18120.0 (4)
C5—C4—H4119.9C16—C17—H17120.0
C3—C4—H4119.9C18—C17—H17120.0
N2—C5—C4124.2 (4)C19—C18—C17120.7 (4)
N2—C5—H5A117.9C19—C18—H18119.6
C4—C5—H5A117.9C17—C18—H18119.6
C7—C6—C3116.9 (4)C18—C19—C14118.5 (4)
C7—C6—H6A108.1C18—C19—C20123.6 (4)
C3—C6—H6A108.1C14—C19—C20117.9 (4)
C7—C6—H6B108.1O3—C20—O2123.2 (4)
C3—C6—H6B108.1O3—C20—C19123.7 (5)
H6A—C6—H6B107.3O2—C20—C19113.1 (4)
C6—C7—C8112.9 (4)C22—C21—C26120.2 (4)
C6—C7—H7A109.0C22—C21—O1124.9 (4)
C8—C7—H7A109.0C26—C21—O1114.7 (4)
C6—C7—H7B109.0C21—C22—C23119.9 (4)
C8—C7—H7B109.0C21—C22—H22120.0
H7A—C7—H7B107.8C23—C22—H22120.0
C9—C8—C7115.6 (4)C22—C23—C24120.2 (4)
C9—C8—H8A108.4C22—C23—H23119.9
C7—C8—H8A108.4C24—C23—H23119.9
C9—C8—H8B108.4C25—C24—C23119.2 (4)
C7—C8—H8B108.4C25—C24—C27122.1 (4)
H8A—C8—H8B107.4C23—C24—C27118.7 (5)
C13—C9—C10116.1 (4)C24—C25—C26120.8 (4)
C13—C9—C8123.2 (4)C24—C25—H25119.6
C10—C9—C8120.6 (4)C26—C25—H25119.6
C11—C10—C9120.1 (4)C21—C26—C25119.7 (5)
C11—C10—H10120.0C21—C26—H26120.1
C9—C10—H10120.0C25—C26—H26120.1
N1—C11—C10124.2 (4)O4—C27—O5123.2 (5)
N1—C11—H11117.9O4—C27—C24124.1 (5)
C10—C11—H11117.9O5—C27—C24112.7 (5)
N1—C12—C13125.0 (5)
C5—N2—C1—C2−1.8 (7)C15—C16—C17—C18−1.5 (8)
N2—C1—C2—C31.2 (8)O1—C16—C17—C18−174.2 (4)
C1—C2—C3—C4−0.4 (7)C16—C17—C18—C190.8 (8)
C1—C2—C3—C6−178.7 (5)C17—C18—C19—C14−1.0 (7)
C2—C3—C4—C50.4 (7)C17—C18—C19—C20−179.6 (4)
C6—C3—C4—C5178.8 (4)C15—C14—C19—C182.1 (7)
C1—N2—C5—C41.8 (7)C15—C14—C19—C20−179.3 (4)
C3—C4—C5—N2−1.1 (8)C18—C19—C20—O3170.0 (5)
C4—C3—C6—C7169.8 (4)C14—C19—C20—O3−8.5 (7)
C2—C3—C6—C7−11.9 (7)C18—C19—C20—O2−11.6 (7)
C3—C6—C7—C8−177.5 (4)C14—C19—C20—O2169.8 (4)
C6—C7—C8—C9179.6 (4)C16—O1—C21—C2224.9 (7)
C7—C8—C9—C13−23.0 (7)C16—O1—C21—C26−160.3 (4)
C7—C8—C9—C10160.9 (4)C26—C21—C22—C232.0 (7)
C13—C9—C10—C110.9 (7)O1—C21—C22—C23176.6 (4)
C8—C9—C10—C11177.2 (4)C21—C22—C23—C24−1.5 (7)
C12—N1—C11—C10−1.6 (7)C22—C23—C24—C250.2 (7)
C9—C10—C11—N10.8 (7)C22—C23—C24—C27179.9 (4)
C11—N1—C12—C130.8 (7)C23—C24—C25—C260.5 (7)
C10—C9—C13—C12−1.7 (7)C27—C24—C25—C26−179.2 (4)
C8—C9—C13—C12−177.9 (4)C22—C21—C26—C25−1.3 (7)
N1—C12—C13—C90.9 (8)O1—C21—C26—C25−176.4 (4)
C19—C14—C15—C16−2.8 (8)C24—C25—C26—C210.0 (7)
C14—C15—C16—C172.4 (8)C25—C24—C27—O4178.6 (5)
C14—C15—C16—O1174.5 (4)C23—C24—C27—O4−1.1 (8)
C21—O1—C16—C17−144.3 (4)C25—C24—C27—O5−0.5 (7)
C21—O1—C16—C1543.3 (7)C23—C24—C27—O5179.8 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2···N2i0.821.862.679 (5)174
O5—H5···N1ii0.821.752.566 (5)175
C4—H4···O3iii0.932.553.418 (6)155
C5—H5A···O3iv0.932.483.160 (6)130
C12—H12···O4v0.932.453.174 (7)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N2i0.821.862.679 (5)174
O5—H5⋯N1ii0.821.752.566 (5)175
C4—H4⋯O3iii0.932.553.418 (6)155
C5—H5A⋯O3iv0.932.483.160 (6)130
C12—H12⋯O4v0.932.453.174 (7)135

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,3-Di-4-pyridylpropane-4,4'-oxy-dibenzoic acid (1/1).

Authors:  Guangzhe Li; Chris Salim; Hirofumi Hinode
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
  2 in total
  2 in total

1.  1,3-Di-4-pyridylpropane-4,4'-oxy-dibenzoic acid (1/1).

Authors:  Guangzhe Li; Chris Salim; Hirofumi Hinode
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

2.  4,4'-(Ethene-1,2-diyl)dipyridinium bis-[4-(2-carboxy-benzo-yl)benzoate].

Authors:  Cai Li; Dong-Sheng Li; Jun Zhao; Xue-Gang Zheng; Xi-Jun Ke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-25
  2 in total

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