Literature DB >> 21202722

4-[5-(4-Pyrid-yl)-1,3,4-oxadiazol-2-yl]pyridine N-oxide-isophthalic acid (1/1).

Gui-Ge Hou1, Li-Li Liu, Jian-Ping Ma, Ru-Qi Huang, Yu-Bin Dong.   

Abstract

The title compound, C(12)H(8)N(4)O(2)·C(8)H(6)O(4), was synthesized from 4-[5-(4-pyrid-yl)-1,3,4-oxadiazol-2-yl]pyridine N-oxide and isophthalic acid. The two mol-ecules are linked through O-H⋯O and O-H⋯N hydrogen bonds. Weak intra-molecular π-π inter-actions between the two hydrogen-bonded chains result in the formation a one-dimensional supra-molecular curved tape (the face-to-face distance between the pyridine N-oxide ring and the benzene ring is 3.7 Å).

Entities:  

Year:  2008        PMID: 21202722      PMCID: PMC2961495          DOI: 10.1107/S1600536808012622

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Beckmann & Jänicke (2006 ▶); Dong et al. (2003 ▶); Du et al. (2006 ▶); Hunter (1994 ▶); Kitagawa et al. (2004 ▶); Long et al. (2004 ▶); Lu et al. (1997 ▶); Ma et al. (2005 ▶); Ren et al. (1995 ▶); Tan et al. (2006 ▶).

Experimental

Crystal data

C12H8N4O2·C8H6O4 M = 406.35 Triclinic, a = 7.0993 (18) Å b = 7.1770 (19) Å c = 19.823 (5) Å α = 93.003 (4)° β = 98.481 (3)° γ = 112.745 (4)° V = 914.6 (4) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 298 (2) K 0.30 × 0.15 × 0.06 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: none 4661 measured reflections 3189 independent reflections 1972 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.132 S = 0.98 3189 reflections 272 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker 2000 ▶); cell refinement: SMART; data reduction: SAINT (Bruker 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808012622/bv2095sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012622/bv2095Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8N4O2·C8H6O4Z = 2
Mr = 406.35F000 = 420
Triclinic, P1Dx = 1.475 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.0993 (18) ÅCell parameters from 893 reflections
b = 7.1770 (19) Åθ = 3.2–21.1º
c = 19.823 (5) ŵ = 0.11 mm1
α = 93.003 (4)ºT = 298 (2) K
β = 98.481 (3)ºBar, colourless
γ = 112.745 (4)º0.30 × 0.15 × 0.06 mm
V = 914.6 (4) Å3
Bruker SMART APEX diffractometer1972 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
Monochromator: graphiteθmax = 25.0º
T = 298(2) Kθmin = 3.1º
φ and ω scansh = −8→8
Absorption correction: nonek = −8→8
4661 measured reflectionsl = −17→23
3189 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.132  w = 1/[σ2(Fo2) + (0.0637P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max = 0.001
3189 reflectionsΔρmax = 0.30 e Å3
272 parametersΔρmin = −0.15 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7708 (3)0.9021 (3)0.64281 (9)0.0693 (6)
O21.0221 (3)0.8709 (4)0.59557 (10)0.0861 (7)
O5−0.2941 (3)0.2221 (4)−0.02763 (9)0.0882 (8)
O30.8643 (3)1.0843 (3)0.88695 (9)0.0738 (6)
H30.83091.12760.92030.111*
O41.1774 (3)1.2181 (3)0.95238 (9)0.0726 (6)
C1−0.4071 (4)0.2792 (4)0.06980 (13)0.0592 (8)
H1A−0.54080.23740.04460.071*
C2−0.3697 (4)0.3405 (4)0.13821 (12)0.0528 (7)
H2−0.47810.33990.15950.063*
C3−0.1721 (4)0.4035 (4)0.17649 (11)0.0427 (6)
C4−0.0155 (4)0.4016 (4)0.14322 (12)0.0515 (7)
H40.11890.44290.16780.062*
C5−0.0572 (4)0.3385 (4)0.07365 (12)0.0558 (7)
H5A0.04890.33750.05130.067*
C6−0.1345 (4)0.4706 (4)0.24973 (12)0.0436 (6)
C70.0337 (4)0.5784 (4)0.35129 (11)0.0431 (6)
C80.2083 (4)0.6463 (4)0.40831 (11)0.0415 (6)
C90.1803 (4)0.7064 (4)0.47216 (12)0.0496 (7)
H90.05330.70760.47820.059*
C100.3421 (4)0.7639 (4)0.52633 (12)0.0520 (7)
H100.32050.80000.56940.062*
C110.5555 (4)0.7154 (4)0.45907 (13)0.0551 (7)
H110.68560.72050.45420.066*
C120.4001 (4)0.6505 (4)0.40169 (12)0.0490 (7)
H120.42450.61050.35960.059*
C130.9602 (4)0.9161 (4)0.64414 (14)0.0521 (7)
C141.0945 (4)0.9948 (4)0.71368 (11)0.0453 (6)
C151.0149 (4)1.0271 (4)0.77116 (12)0.0451 (6)
H150.87380.99750.76700.054*
C161.1455 (4)1.1037 (4)0.83507 (11)0.0436 (6)
C171.3553 (4)1.1470 (4)0.84013 (13)0.0533 (7)
H171.44431.19950.88220.064*
C181.4324 (4)1.1130 (4)0.78334 (13)0.0577 (8)
H181.57341.14190.78740.069*
C191.3043 (4)1.0369 (4)0.72065 (13)0.0542 (7)
H191.35861.01340.68270.065*
C201.0666 (4)1.1418 (4)0.89757 (13)0.0509 (7)
N1−0.2515 (3)0.2788 (3)0.03830 (10)0.0569 (6)
N2−0.2670 (3)0.4826 (3)0.28576 (10)0.0511 (6)
N3−0.1552 (3)0.5550 (3)0.35274 (10)0.0529 (6)
N40.5295 (3)0.7709 (3)0.52071 (10)0.0525 (6)
H10.70160.85260.60430.079*
O60.0597 (2)0.5275 (2)0.28698 (7)0.0451 (5)
U11U22U33U12U13U23
O10.0608 (14)0.0982 (17)0.0411 (11)0.0313 (12)−0.0073 (9)−0.0095 (10)
O20.0854 (16)0.128 (2)0.0449 (12)0.0492 (15)0.0062 (11)−0.0239 (12)
O50.0759 (15)0.157 (2)0.0339 (12)0.0592 (15)−0.0082 (10)−0.0223 (12)
O30.0545 (13)0.1118 (18)0.0450 (12)0.0277 (12)0.0025 (9)−0.0144 (11)
O40.0630 (13)0.1144 (18)0.0341 (11)0.0374 (12)−0.0070 (9)−0.0135 (11)
C10.0494 (17)0.077 (2)0.0459 (17)0.0259 (15)−0.0048 (13)−0.0079 (14)
C20.0514 (17)0.0658 (19)0.0379 (16)0.0239 (14)0.0000 (12)−0.0024 (13)
C30.0490 (16)0.0424 (16)0.0352 (14)0.0190 (12)0.0020 (12)0.0006 (11)
C40.0498 (17)0.0596 (19)0.0377 (16)0.0182 (14)−0.0013 (12)−0.0006 (12)
C50.0523 (18)0.075 (2)0.0405 (16)0.0282 (15)0.0051 (13)0.0002 (14)
C60.0501 (17)0.0421 (16)0.0331 (14)0.0167 (13)−0.0027 (12)0.0002 (11)
C70.0534 (17)0.0443 (16)0.0326 (15)0.0210 (13)0.0079 (12)0.0010 (11)
C80.0474 (16)0.0436 (16)0.0313 (14)0.0182 (12)0.0019 (11)0.0009 (11)
C90.0487 (16)0.0590 (18)0.0375 (15)0.0193 (14)0.0060 (12)−0.0018 (12)
C100.0591 (19)0.0614 (19)0.0319 (15)0.0225 (15)0.0052 (13)−0.0025 (12)
C110.0491 (17)0.066 (2)0.0508 (18)0.0258 (15)0.0033 (14)0.0032 (14)
C120.0551 (18)0.0575 (18)0.0338 (15)0.0228 (14)0.0073 (13)−0.0006 (12)
C130.0625 (19)0.0471 (18)0.0468 (18)0.0236 (14)0.0068 (14)0.0024 (13)
C140.0574 (17)0.0467 (17)0.0315 (14)0.0233 (13)0.0020 (12)−0.0004 (11)
C150.0472 (15)0.0468 (16)0.0417 (15)0.0221 (13)0.0003 (12)0.0039 (12)
C160.0492 (16)0.0482 (16)0.0329 (14)0.0220 (13)−0.0005 (12)0.0029 (11)
C170.0537 (18)0.0604 (19)0.0428 (16)0.0251 (15)−0.0042 (13)−0.0001 (13)
C180.0508 (17)0.073 (2)0.0485 (18)0.0270 (16)0.0037 (14)0.0004 (15)
C190.0609 (19)0.0605 (19)0.0458 (17)0.0285 (15)0.0126 (14)0.0029 (13)
C200.0509 (18)0.0600 (19)0.0408 (16)0.0251 (14)−0.0007 (13)0.0014 (13)
N10.0585 (16)0.0779 (18)0.0301 (13)0.0295 (13)−0.0054 (11)−0.0088 (11)
N20.0505 (14)0.0635 (16)0.0366 (13)0.0230 (12)0.0021 (10)−0.0024 (10)
N30.0525 (15)0.0684 (16)0.0351 (13)0.0244 (12)0.0016 (10)−0.0013 (10)
N40.0582 (15)0.0540 (15)0.0382 (13)0.0189 (12)−0.0012 (11)0.0011 (10)
O60.0486 (11)0.0548 (11)0.0293 (9)0.0211 (9)0.0009 (8)−0.0035 (7)
O1—C131.306 (3)C8—C121.377 (3)
O1—H10.8221C8—C91.382 (3)
O2—C131.195 (3)C9—C101.366 (3)
O5—N11.303 (2)C9—H90.9300
O3—C201.312 (3)C10—N41.333 (3)
O3—H30.8200C10—H100.9300
O4—C201.205 (3)C11—N41.326 (3)
C1—N11.347 (3)C11—C121.380 (3)
C1—C21.358 (3)C11—H110.9300
C1—H1A0.9300C12—H120.9300
C2—C31.381 (3)C13—C141.497 (3)
C2—H20.9300C14—C191.384 (3)
C3—C41.378 (3)C14—C151.391 (3)
C3—C61.457 (3)C15—C161.398 (3)
C4—C51.380 (3)C15—H150.9300
C4—H40.9300C16—C171.385 (3)
C5—N11.343 (3)C16—C201.487 (3)
C5—H5A0.9300C17—C181.372 (3)
C6—N21.287 (3)C17—H170.9300
C6—O61.358 (3)C18—C191.372 (3)
C7—N31.290 (3)C18—H180.9300
C7—O61.366 (3)C19—H190.9300
C7—C81.454 (3)N2—N31.400 (3)
C13—O1—H1109.3C8—C12—C11118.4 (2)
C20—O3—H3109.5C8—C12—H12120.8
N1—C1—C2120.3 (2)C11—C12—H12120.8
N1—C1—H1A119.8O2—C13—O1124.3 (3)
C2—C1—H1A119.8O2—C13—C14122.8 (3)
C1—C2—C3120.7 (2)O1—C13—C14112.8 (2)
C1—C2—H2119.7C19—C14—C15119.2 (2)
C3—C2—H2119.7C19—C14—C13118.7 (2)
C4—C3—C2118.0 (2)C15—C14—C13122.0 (2)
C4—C3—C6122.1 (2)C14—C15—C16120.4 (2)
C2—C3—C6119.9 (2)C14—C15—H15119.8
C3—C4—C5120.3 (2)C16—C15—H15119.8
C3—C4—H4119.8C17—C16—C15118.9 (2)
C5—C4—H4119.8C17—C16—C20119.1 (2)
N1—C5—C4119.7 (2)C15—C16—C20122.0 (2)
N1—C5—H5A120.1C18—C17—C16120.3 (2)
C4—C5—H5A120.1C18—C17—H17119.8
N2—C6—O6113.3 (2)C16—C17—H17119.8
N2—C6—C3127.5 (2)C19—C18—C17120.8 (3)
O6—C6—C3119.1 (2)C19—C18—H18119.6
N3—C7—O6112.1 (2)C17—C18—H18119.6
N3—C7—C8127.9 (2)C18—C19—C14120.2 (2)
O6—C7—C8120.0 (2)C18—C19—H19119.9
C12—C8—C9118.4 (2)C14—C19—H19119.9
C12—C8—C7122.7 (2)O4—C20—O3123.4 (2)
C9—C8—C7118.8 (2)O4—C20—C16123.4 (2)
C10—C9—C8119.0 (2)O3—C20—C16113.2 (2)
C10—C9—H9120.5O5—N1—C5120.9 (2)
C8—C9—H9120.5O5—N1—C1118.2 (2)
N4—C10—C9123.4 (2)C5—N1—C1120.9 (2)
N4—C10—H10118.3C6—N2—N3105.6 (2)
C9—C10—H10118.3C7—N3—N2106.81 (19)
N4—C11—C12123.7 (2)C11—N4—C10117.1 (2)
N4—C11—H11118.2C6—O6—C7102.14 (18)
C12—C11—H11118.2
N1—C1—C2—C30.2 (4)C14—C15—C16—C20179.5 (2)
C1—C2—C3—C4−0.2 (4)C15—C16—C17—C18−0.7 (4)
C1—C2—C3—C6179.4 (2)C20—C16—C17—C18179.9 (2)
C2—C3—C4—C50.1 (4)C16—C17—C18—C190.4 (4)
C6—C3—C4—C5−179.5 (2)C17—C18—C19—C140.6 (4)
C3—C4—C5—N10.0 (4)C15—C14—C19—C18−1.2 (4)
C4—C3—C6—N2178.5 (3)C13—C14—C19—C18178.7 (2)
C2—C3—C6—N2−1.1 (4)C17—C16—C20—O43.7 (4)
C4—C3—C6—O6−2.0 (4)C15—C16—C20—O4−175.7 (3)
C2—C3—C6—O6178.4 (2)C17—C16—C20—O3−176.5 (2)
N3—C7—C8—C12174.8 (2)C15—C16—C20—O34.1 (4)
O6—C7—C8—C12−4.2 (4)C4—C5—N1—O5178.7 (2)
N3—C7—C8—C9−4.2 (4)C4—C5—N1—C10.0 (4)
O6—C7—C8—C9176.9 (2)C2—C1—N1—O5−178.8 (2)
C12—C8—C9—C10−1.1 (4)C2—C1—N1—C50.0 (4)
C7—C8—C9—C10177.9 (2)O6—C6—N2—N30.5 (3)
C8—C9—C10—N42.0 (4)C3—C6—N2—N3−179.9 (2)
C9—C8—C12—C11−0.3 (4)O6—C7—N3—N20.4 (3)
C7—C8—C12—C11−179.3 (2)C8—C7—N3—N2−178.6 (2)
N4—C11—C12—C81.2 (4)C6—N2—N3—C7−0.5 (3)
O2—C13—C14—C196.8 (4)C12—C11—N4—C10−0.5 (4)
O1—C13—C14—C19−173.4 (2)C9—C10—N4—C11−1.1 (4)
O2—C13—C14—C15−173.3 (3)N2—C6—O6—C7−0.3 (3)
O1—C13—C14—C156.5 (4)C3—C6—O6—C7−179.9 (2)
C19—C14—C15—C160.9 (4)N3—C7—O6—C60.0 (3)
C13—C14—C15—C16−179.0 (2)C8—C7—O6—C6179.0 (2)
C14—C15—C16—C170.1 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N40.821.822.640 (2)171
O3—H3···O5i0.821.722.521 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N40.821.822.640 (2)171
O3—H3⋯O5i0.821.722.521 (3)163

Symmetry code: (i) .

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