Literature DB >> 21754430

Ethyl 2-[3-(3,5-Dinitrobenzo-yl)thio-ureido]benzoate.

Sohail Saeed, Naghmana Rashid, Moazzam H Bhatti, Wing-Tak Wong.   

Abstract

In the title compound, C(17)H(14)N(4)O(7)S, the dihedral angle between the two benzene rings is 9.04 (15)°. The centroid-centroid distance of 3.9825 (19) Å between nearly parallel benzene rings of adjacent mol-ecules suggests the existence of π-π stacking. Inter-molecular and intra-mol-ecular N-H⋯O hydrogen bonding is present in the structure. The eth-oxy group is disordered over two sets of sites with an occupancy ratio of 0.580 (15):0.420 (15). The crystal studied was an inversion twin.

Entities:  

Year:  2011        PMID: 21754430      PMCID: PMC3089348          DOI: 10.1107/S1600536811012918

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of thiourea derivatives and their bioloical activity, and a related structure, see: Saeed et al. (2010 ▶).

Experimental

Crystal data

C17H14N4O7S M = 418.38 Monoclinic, a = 11.7264 (19) Å b = 16.617 (3) Å c = 9.9630 (16) Å β = 101.522 (2)° V = 1902.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 299 K 0.27 × 0.16 × 0.08 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.943, T max = 0.983 4944 measured reflections 3011 independent reflections 2727 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.095 S = 1.10 3011 reflections 301 parameters 42 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack (1983 ▶), 1340 Friedel pairs Flack parameter: 0.39 (8) Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811012918/xu5177sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012918/xu5177Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14N4O7SF(000) = 864
Mr = 418.38Dx = 1.461 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 6458 reflections
a = 11.7264 (19) Åθ = 2.1–25.0°
b = 16.617 (3) ŵ = 0.22 mm1
c = 9.9630 (16) ÅT = 299 K
β = 101.522 (2)°Block, yellow
V = 1902.3 (5) Å30.27 × 0.16 × 0.08 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3011 independent reflections
Radiation source: fine-focus sealed tube2727 reflections with I > 2σ(I)
graphiteRint = 0.014
ω and φ scansθmax = 25.0°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −13→13
Tmin = 0.943, Tmax = 0.983k = −19→15
4944 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0536P)2 + 0.3273P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
3011 reflectionsΔρmax = 0.22 e Å3
301 parametersΔρmin = −0.24 e Å3
42 restraintsAbsolute structure: Flack (1983), 1340 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.39 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.94150 (8)0.19793 (4)0.68183 (8)0.0759 (3)
O20.8103 (2)0.05570 (13)1.0967 (3)0.0866 (7)
O30.99391 (19)−0.01499 (10)0.97679 (18)0.0663 (5)
O41.0187 (3)−0.31100 (14)0.9255 (4)0.1022 (8)
O51.1263 (3)−0.35915 (14)0.7937 (3)0.1095 (10)
O61.2496 (4)−0.1832 (2)0.4646 (3)0.1355 (14)
O71.2710 (4)−0.0571 (3)0.5114 (4)0.1459 (15)
N10.9176 (2)0.13747 (12)0.9269 (2)0.0543 (5)
H10.911 (2)0.0912 (17)0.974 (3)0.064 (8)*
H20.997 (2)0.0472 (15)0.704 (3)0.045 (7)*
N20.9902 (2)0.05353 (12)0.7789 (2)0.0555 (5)
N31.0798 (3)−0.30348 (14)0.8423 (3)0.0773 (8)
N41.2402 (3)−0.1244 (3)0.5338 (3)0.0976 (10)
C10.7736 (3)0.11786 (17)1.1281 (3)0.0647 (7)
C20.8103 (2)0.19844 (15)1.0865 (3)0.0563 (6)
C30.7770 (3)0.26756 (18)1.1485 (3)0.0713 (8)
H30.72960.26261.21250.086*
C40.8124 (4)0.3418 (2)1.1176 (4)0.0842 (10)
H40.78850.38701.15960.101*
C50.8830 (3)0.35007 (17)1.0248 (3)0.0782 (9)
H50.90800.40101.00510.094*
C60.9179 (3)0.28322 (16)0.9596 (3)0.0657 (7)
H60.96620.28960.89680.079*
C70.8809 (2)0.20717 (14)0.9882 (2)0.0531 (6)
C80.9476 (2)0.13033 (14)0.8043 (3)0.0525 (6)
C91.0156 (2)−0.01157 (13)0.8622 (2)0.0518 (6)
C101.0713 (2)−0.08065 (14)0.8043 (3)0.0539 (6)
C111.0528 (2)−0.15737 (14)0.8509 (3)0.0555 (6)
H111.0103−0.16500.91930.067*
C121.0991 (2)−0.22190 (15)0.7933 (3)0.0595 (7)
C131.1609 (3)−0.21360 (18)0.6905 (3)0.0695 (8)
H131.1890−0.25820.65080.083*
C141.1797 (3)−0.1366 (2)0.6489 (3)0.0677 (8)
C151.1379 (3)−0.07002 (16)0.7053 (3)0.0618 (7)
H151.1542−0.01860.67750.074*
O10.7136 (10)0.1247 (5)1.2262 (9)0.083 (2)0.580 (15)
C160.6730 (10)0.0532 (7)1.2838 (13)0.113 (4)0.580 (15)
H16A0.69310.05481.38300.135*0.580 (15)
H16B0.70770.00561.25230.135*0.580 (15)
C170.5404 (10)0.0522 (6)1.2345 (19)0.161 (6)0.580 (15)
H17A0.50700.01251.28510.193*0.580 (15)
H17B0.52190.03921.13870.193*0.580 (15)
H17C0.50930.10421.24890.193*0.580 (15)
O1'0.6758 (12)0.1178 (7)1.1805 (14)0.085 (3)0.420 (15)
C16'0.6436 (15)0.0411 (7)1.2287 (14)0.084 (4)0.420 (15)
H16C0.71190.00731.25490.101*0.420 (15)
H16D0.58890.01391.15710.101*0.420 (15)
C17'0.5883 (19)0.0568 (8)1.3511 (18)0.134 (6)0.420 (15)
H17D0.57380.00651.39200.161*0.420 (15)
H17E0.51620.08501.32190.161*0.420 (15)
H17F0.63990.08881.41690.161*0.420 (15)
U11U22U33U12U13U23
S10.1117 (6)0.0590 (4)0.0655 (4)0.0263 (4)0.0381 (4)0.0158 (3)
O20.1105 (17)0.0589 (12)0.1056 (17)0.0112 (11)0.0580 (14)0.0120 (11)
O30.1054 (16)0.0478 (10)0.0498 (10)0.0112 (9)0.0252 (10)−0.0004 (7)
O40.131 (2)0.0570 (13)0.122 (2)−0.0046 (13)0.031 (2)0.0083 (13)
O50.118 (2)0.0524 (12)0.153 (3)0.0257 (13)0.0147 (19)−0.0192 (14)
O60.172 (3)0.163 (3)0.0823 (18)0.073 (3)0.052 (2)−0.0065 (18)
O70.179 (4)0.131 (3)0.163 (3)0.028 (3)0.119 (3)0.026 (2)
N10.0734 (15)0.0413 (10)0.0509 (12)0.0056 (9)0.0185 (10)−0.0003 (8)
N20.0776 (15)0.0480 (11)0.0434 (12)0.0094 (10)0.0178 (11)−0.0029 (9)
N30.0820 (18)0.0479 (13)0.092 (2)0.0105 (12)−0.0056 (16)−0.0079 (13)
N40.099 (2)0.123 (3)0.0795 (19)0.049 (2)0.0396 (17)0.0068 (19)
C10.076 (2)0.0658 (17)0.0559 (15)0.0108 (14)0.0209 (14)0.0059 (12)
C20.0635 (17)0.0569 (14)0.0459 (13)0.0114 (11)0.0046 (12)−0.0053 (10)
C30.081 (2)0.0679 (18)0.0663 (18)0.0144 (14)0.0178 (16)−0.0096 (14)
C40.103 (3)0.0639 (19)0.086 (2)0.0187 (17)0.0186 (19)−0.0250 (16)
C50.103 (2)0.0453 (14)0.084 (2)0.0031 (14)0.0121 (18)−0.0134 (13)
C60.080 (2)0.0526 (14)0.0644 (17)−0.0012 (12)0.0144 (15)−0.0065 (12)
C70.0631 (16)0.0459 (12)0.0478 (13)0.0070 (10)0.0049 (12)−0.0029 (10)
C80.0577 (15)0.0476 (13)0.0520 (13)0.0034 (10)0.0100 (11)−0.0010 (10)
C90.0643 (17)0.0453 (13)0.0462 (14)0.0029 (10)0.0119 (12)−0.0023 (10)
C100.0649 (17)0.0507 (13)0.0445 (12)0.0062 (11)0.0069 (12)−0.0030 (10)
C110.0637 (17)0.0486 (13)0.0516 (13)0.0047 (11)0.0056 (12)−0.0062 (10)
C120.0622 (17)0.0462 (13)0.0641 (17)0.0098 (11)−0.0015 (14)−0.0033 (11)
C130.0718 (19)0.0740 (18)0.0574 (16)0.0290 (14)0.0001 (14)−0.0162 (14)
C140.0655 (18)0.082 (2)0.0568 (16)0.0240 (14)0.0151 (14)0.0023 (14)
C150.0686 (18)0.0592 (14)0.0581 (15)0.0113 (13)0.0138 (13)0.0029 (12)
O10.103 (6)0.083 (3)0.075 (4)0.006 (3)0.043 (4)0.008 (3)
C160.130 (8)0.116 (7)0.104 (7)−0.012 (5)0.053 (6)0.018 (5)
C170.191 (12)0.086 (5)0.212 (14)−0.002 (6)0.056 (10)0.002 (7)
O1'0.087 (6)0.081 (4)0.093 (7)0.005 (4)0.035 (5)−0.008 (4)
C16'0.090 (7)0.070 (5)0.108 (8)−0.013 (4)0.055 (6)0.007 (5)
C17'0.209 (14)0.092 (7)0.135 (10)0.039 (8)0.116 (10)0.024 (7)
S1—C81.649 (2)C6—C71.385 (4)
O2—C11.185 (3)C6—H60.9300
O3—C91.219 (3)C9—C101.493 (3)
O4—N31.205 (4)C10—C151.386 (4)
O5—N31.222 (4)C10—C111.388 (3)
O6—N41.213 (4)C11—C121.377 (4)
O7—N41.210 (5)C11—H110.9300
N1—C81.342 (3)C12—C131.375 (4)
N1—C71.416 (3)C13—C141.376 (5)
N1—H10.91 (3)C13—H130.9300
N2—C91.360 (3)C14—C151.375 (4)
N2—C81.412 (3)C15—H150.9300
N2—H20.77 (3)O1—C161.442 (8)
N3—C121.474 (4)C16—C171.535 (9)
N4—C141.478 (4)C16—H16A0.9700
C1—O11.318 (10)C16—H16B0.9700
C1—O1'1.351 (14)C17—H17A0.9600
C1—C21.490 (4)C17—H17B0.9600
C2—C31.396 (4)C17—H17C0.9600
C2—C71.410 (4)O1'—C16'1.440 (9)
C3—C41.356 (5)C16'—C17'1.514 (9)
C3—H30.9300C16'—H16C0.9700
C4—C51.365 (5)C16'—H16D0.9700
C4—H40.9300C17'—H17D0.9600
C5—C61.389 (4)C17'—H17E0.9600
C5—H50.9300C17'—H17F0.9600
C8—N1—C7128.5 (2)N2—C9—C10115.8 (2)
C8—N1—H1117.1 (18)C15—C10—C11120.2 (2)
C7—N1—H1114.0 (18)C15—C10—C9122.0 (2)
C9—N2—C8130.7 (2)C11—C10—C9117.9 (2)
C9—N2—H2115.4 (18)C12—C11—C10118.4 (3)
C8—N2—H2113.8 (19)C12—C11—H11120.8
O4—N3—O5124.6 (3)C10—C11—H11120.8
O4—N3—C12118.4 (2)C13—C12—C11122.8 (3)
O5—N3—C12117.1 (3)C13—C12—N3118.5 (2)
O7—N4—O6125.1 (4)C11—C12—N3118.6 (3)
O7—N4—C14118.6 (3)C12—C13—C14117.2 (2)
O6—N4—C14116.2 (4)C12—C13—H13121.4
O2—C1—O1123.2 (5)C14—C13—H13121.4
O2—C1—O1'118.9 (6)C15—C14—C13122.3 (3)
O2—C1—C2124.7 (3)C15—C14—N4118.1 (3)
O1—C1—C2110.8 (4)C13—C14—N4119.5 (3)
O1'—C1—C2115.0 (5)C14—C15—C10119.0 (3)
C3—C2—C7118.5 (2)C14—C15—H15120.5
C3—C2—C1119.6 (3)C10—C15—H15120.5
C7—C2—C1121.9 (2)C1—O1—C16119.4 (9)
C4—C3—C2121.5 (3)O1—C16—C17106.0 (9)
C4—C3—H3119.2O1—C16—H16A110.5
C2—C3—H3119.2C17—C16—H16A110.5
C3—C4—C5120.0 (3)O1—C16—H16B110.5
C3—C4—H4120.0C17—C16—H16B110.5
C5—C4—H4120.0H16A—C16—H16B108.7
C4—C5—C6120.7 (3)C1—O1'—C16'115.3 (10)
C4—C5—H5119.6O1'—C16'—C17'107.4 (10)
C6—C5—H5119.6O1'—C16'—H16C110.2
C7—C6—C5120.0 (3)C17'—C16'—H16C110.2
C7—C6—H6120.0O1'—C16'—H16D110.2
C5—C6—H6120.0C17'—C16'—H16D110.2
C6—C7—C2119.3 (2)H16C—C16'—H16D108.5
C6—C7—N1121.5 (2)C16'—C17'—H17D109.5
C2—C7—N1119.1 (2)C16'—C17'—H17E109.5
N1—C8—N2114.2 (2)H17D—C17'—H17E109.5
N1—C8—S1129.22 (19)C16'—C17'—H17F109.5
N2—C8—S1116.62 (19)H17D—C17'—H17F109.5
O3—C9—N2123.2 (2)H17E—C17'—H17F109.5
O3—C9—C10121.0 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.91 (3)1.95 (3)2.672 (3)134 (2)
N1—H1···O30.91 (3)2.01 (3)2.700 (3)131 (2)
N2—H2···O3i0.77 (3)2.32 (3)3.086 (3)172 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.91 (3)1.95 (3)2.672 (3)134 (2)
N1—H1⋯O30.91 (3)2.01 (3)2.700 (3)131 (2)
N2—H2⋯O3i0.77 (3)2.32 (3)3.086 (3)172 (2)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 2-[3-(4-nitro-benzo-yl)thio-ureido]benzoate.

Authors:  Sohail Saeed; Naghmana Rashid; Wing-Tak Wong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31
  2 in total

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