| Literature DB >> 24427070 |
Ismail Warad1, Salim F Haddad2, Mousa Al-Noaimi3, Belkheir Hammouti4, Taibi Ben Hadda5.
Abstract
There are two independent mol-ecules in the asymmetric unit of the title compound, C12H9ClN2OS, a Schiff base derived from hydrazide, in which the dihedral angles between the thio-phene and benzene rings are 3.6 (3) and 7.3 (3)°. In the crystal, the two independent mol-ecules are arranged about an approximate non-crystallographic inversion center and are connected by two N-H⋯O hydrogen bonds. Weak C-H⋯Cl contacts are also present. Conversely, there are neither significant aromatic stacking inter-actions nor contacts involving S atoms.Entities:
Year: 2013 PMID: 24427070 PMCID: PMC3884466 DOI: 10.1107/S1600536813020850
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H9ClN2OS | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 3090 reflections |
| θ = 2.9–29.2° | |
| µ = 0.48 mm−1 | |
| Parallelpiped, colourless | |
| 0.30 × 0.20 × 0.10 mm |
| Agilent Xcalibur Eos diffractometer | 3845 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 3341 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0534 pixels mm-1 | θmax = 25.0°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 9965 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3845 reflections | (Δ/σ)max < 0.001 |
| 316 parameters | Δρmax = 0.32 e Å−3 |
| 1 restraint | Δρmin = −0.32 e Å−3 |
| 0 constraints |
| S1 | 0.30063 (4) | 0.4329 (3) | 0.72298 (6) | 0.0619 (3) | |
| O1 | 0.17505 (11) | −0.0648 (6) | 0.67301 (13) | 0.0509 (7) | |
| N1 | 0.17938 (14) | 0.2450 (8) | 0.7547 (2) | 0.0414 (9) | |
| H1A | 0.1555 (17) | 0.166 (10) | 0.770 (2) | 0.046 (13)* | |
| N2 | 0.20518 (12) | 0.4548 (7) | 0.78995 (15) | 0.0363 (7) | |
| Cl1 | 0.11381 (5) | 0.7410 (3) | 0.94945 (7) | 0.0663 (4) | |
| C1 | 0.34789 (17) | 0.3764 (12) | 0.6679 (2) | 0.0598 (12) | |
| H1 | 0.3823 | 0.4576 | 0.6701 | 0.072* | |
| C2 | 0.33115 (19) | 0.2071 (12) | 0.6219 (3) | 0.0684 (16) | |
| H2B | 0.3532 | 0.1601 | 0.5889 | 0.082* | |
| C3 | 0.27627 (15) | 0.0975 (10) | 0.6257 (2) | 0.0502 (11) | |
| H3 | 0.2582 | −0.0210 | 0.5969 | 0.060* | |
| C4 | 0.25557 (16) | 0.2105 (8) | 0.6832 (2) | 0.0412 (11) | |
| C5 | 0.20111 (14) | 0.1229 (9) | 0.70353 (18) | 0.0372 (9) | |
| C6 | 0.17984 (14) | 0.5461 (8) | 0.83769 (19) | 0.0376 (9) | |
| H6A | 0.1454 | 0.4745 | 0.8454 | 0.045* | |
| C7 | 0.20468 (14) | 0.7612 (8) | 0.8799 (2) | 0.0357 (10) | |
| C8 | 0.17872 (15) | 0.8624 (8) | 0.93273 (19) | 0.0427 (9) | |
| C9 | 0.20295 (19) | 1.0600 (10) | 0.9746 (2) | 0.0527 (11) | |
| H9A | 0.1849 | 1.1230 | 1.0098 | 0.063* | |
| C10 | 0.25406 (18) | 1.1590 (11) | 0.9628 (3) | 0.0580 (13) | |
| H10A | 0.2707 | 1.2914 | 0.9902 | 0.070* | |
| C11 | 0.28077 (17) | 1.0671 (9) | 0.9117 (2) | 0.0551 (11) | |
| H11A | 0.3156 | 1.1352 | 0.9048 | 0.066* | |
| C12 | 0.25639 (14) | 0.8721 (9) | 0.8698 (2) | 0.0451 (10) | |
| H12A | 0.2748 | 0.8147 | 0.8345 | 0.054* | |
| S2 | 0.45222 (4) | −0.0291 (3) | 0.74612 (7) | 0.0598 (3) | |
| O2 | 0.57997 (11) | −0.5028 (7) | 0.79635 (13) | 0.0506 (7) | |
| N3 | 0.57520 (13) | −0.1945 (7) | 0.71524 (18) | 0.0367 (8) | |
| H3A | 0.6055 (17) | −0.260 (9) | 0.705 (2) | 0.050 (13)* | |
| N4 | 0.54883 (11) | 0.0161 (7) | 0.67961 (15) | 0.0365 (7) | |
| Cl2 | 0.63843 (4) | 0.3111 (3) | 0.52014 (6) | 0.0597 (3) | |
| C13 | 0.40651 (17) | −0.0776 (12) | 0.8022 (3) | 0.0656 (14) | |
| H13 | 0.3718 | −0.0001 | 0.8000 | 0.079* | |
| C14 | 0.4247 (2) | −0.2383 (13) | 0.8504 (3) | 0.0694 (17) | |
| H14A | 0.4040 | −0.2836 | 0.8846 | 0.083* | |
| C15 | 0.47921 (17) | −0.3327 (11) | 0.8438 (2) | 0.0565 (12) | |
| H15 | 0.4986 | −0.4426 | 0.8728 | 0.068* | |
| C16 | 0.49924 (15) | −0.2344 (8) | 0.7868 (2) | 0.0384 (10) | |
| C17 | 0.55391 (15) | −0.3165 (9) | 0.7665 (2) | 0.0401 (10) | |
| C18 | 0.57349 (13) | 0.1124 (8) | 0.63301 (19) | 0.0356 (8) | |
| H18A | 0.6082 | 0.0442 | 0.6253 | 0.043* | |
| C19 | 0.54850 (14) | 0.3293 (8) | 0.5909 (2) | 0.0352 (9) | |
| C20 | 0.57460 (14) | 0.4371 (8) | 0.53871 (18) | 0.0390 (9) | |
| C21 | 0.54954 (18) | 0.6404 (9) | 0.4982 (2) | 0.0497 (10) | |
| H21A | 0.5678 | 0.7094 | 0.4636 | 0.060* | |
| C22 | 0.49814 (19) | 0.7381 (9) | 0.5093 (3) | 0.0558 (14) | |
| H22A | 0.4811 | 0.8710 | 0.4823 | 0.067* | |
| C23 | 0.47194 (17) | 0.6338 (10) | 0.5620 (2) | 0.0523 (11) | |
| H23A | 0.4373 | 0.7006 | 0.5705 | 0.063* | |
| C24 | 0.49638 (16) | 0.4368 (9) | 0.6010 (2) | 0.0441 (10) | |
| H24A | 0.4779 | 0.3706 | 0.6355 | 0.053* |
| S1 | 0.0423 (5) | 0.0769 (8) | 0.0665 (8) | −0.0039 (6) | 0.0064 (5) | −0.0024 (7) |
| O1 | 0.0488 (15) | 0.0610 (17) | 0.0427 (17) | −0.0089 (14) | 0.0008 (13) | −0.0127 (15) |
| N1 | 0.0348 (18) | 0.0425 (19) | 0.047 (3) | −0.0051 (15) | 0.0052 (18) | −0.0039 (16) |
| N2 | 0.0339 (15) | 0.0370 (17) | 0.0382 (19) | −0.0004 (13) | 0.0010 (14) | −0.0001 (15) |
| Cl1 | 0.0465 (6) | 0.0949 (9) | 0.0576 (9) | −0.0116 (6) | 0.0170 (6) | −0.0179 (7) |
| C1 | 0.039 (2) | 0.073 (3) | 0.067 (4) | 0.004 (2) | 0.014 (2) | 0.008 (3) |
| C2 | 0.056 (3) | 0.080 (4) | 0.070 (5) | 0.017 (3) | 0.026 (3) | 0.006 (3) |
| C3 | 0.038 (2) | 0.058 (2) | 0.055 (3) | 0.0039 (18) | 0.014 (2) | 0.003 (2) |
| C4 | 0.038 (2) | 0.043 (2) | 0.043 (3) | 0.0051 (16) | 0.0018 (19) | 0.0027 (19) |
| C5 | 0.0393 (19) | 0.042 (2) | 0.031 (2) | 0.0044 (17) | 0.0010 (16) | 0.0014 (19) |
| C6 | 0.0319 (17) | 0.039 (2) | 0.042 (2) | −0.0008 (16) | 0.0034 (16) | 0.0036 (18) |
| C7 | 0.035 (2) | 0.0319 (19) | 0.040 (3) | 0.0033 (14) | 0.0008 (17) | 0.0033 (17) |
| C8 | 0.0385 (19) | 0.042 (2) | 0.048 (3) | 0.0041 (17) | 0.0052 (17) | 0.001 (2) |
| C9 | 0.064 (3) | 0.052 (3) | 0.042 (3) | 0.003 (2) | −0.001 (2) | −0.011 (2) |
| C10 | 0.061 (3) | 0.053 (3) | 0.059 (4) | −0.007 (2) | −0.010 (3) | −0.015 (3) |
| C11 | 0.041 (2) | 0.058 (3) | 0.067 (3) | −0.010 (2) | −0.008 (2) | 0.006 (3) |
| C12 | 0.040 (2) | 0.049 (2) | 0.046 (3) | −0.0008 (18) | 0.0025 (18) | −0.003 (2) |
| S2 | 0.0419 (5) | 0.0785 (8) | 0.0590 (7) | 0.0063 (5) | 0.0047 (5) | 0.0152 (7) |
| O2 | 0.0478 (15) | 0.0633 (17) | 0.0407 (17) | 0.0165 (13) | 0.0013 (14) | 0.0141 (15) |
| N3 | 0.0345 (17) | 0.0403 (17) | 0.035 (2) | 0.0015 (14) | 0.0038 (16) | 0.0036 (16) |
| N4 | 0.0341 (15) | 0.0363 (16) | 0.039 (2) | 0.0009 (13) | 0.0017 (14) | 0.0008 (15) |
| Cl2 | 0.0472 (6) | 0.0745 (7) | 0.0574 (9) | −0.0028 (5) | 0.0165 (6) | 0.0058 (7) |
| C13 | 0.040 (2) | 0.081 (3) | 0.076 (4) | 0.006 (2) | 0.009 (2) | 0.019 (3) |
| C14 | 0.067 (3) | 0.088 (4) | 0.053 (4) | 0.006 (3) | 0.026 (3) | 0.024 (3) |
| C15 | 0.042 (2) | 0.072 (3) | 0.056 (3) | 0.008 (2) | 0.015 (2) | 0.006 (3) |
| C16 | 0.041 (2) | 0.039 (2) | 0.035 (3) | −0.0035 (16) | 0.0003 (19) | 0.0010 (17) |
| C17 | 0.0366 (19) | 0.040 (2) | 0.044 (3) | −0.0036 (17) | −0.0027 (17) | −0.0040 (19) |
| C18 | 0.0311 (16) | 0.0359 (19) | 0.040 (2) | −0.0023 (15) | 0.0006 (16) | −0.0043 (18) |
| C19 | 0.037 (2) | 0.0332 (19) | 0.035 (3) | −0.0094 (16) | −0.0012 (17) | −0.0077 (17) |
| C20 | 0.0425 (19) | 0.038 (2) | 0.037 (2) | −0.0054 (16) | 0.0015 (16) | −0.0065 (18) |
| C21 | 0.070 (3) | 0.044 (2) | 0.036 (2) | −0.010 (2) | −0.002 (2) | 0.005 (2) |
| C22 | 0.066 (3) | 0.044 (2) | 0.058 (4) | 0.005 (2) | −0.020 (3) | 0.003 (2) |
| C23 | 0.044 (2) | 0.050 (2) | 0.062 (3) | 0.004 (2) | −0.005 (2) | −0.003 (2) |
| C24 | 0.041 (2) | 0.041 (2) | 0.050 (3) | −0.0003 (17) | 0.0006 (17) | −0.003 (2) |
| S1—C1 | 1.701 (5) | S2—C13 | 1.686 (5) |
| S1—C4 | 1.720 (5) | S2—C16 | 1.723 (4) |
| O1—C5 | 1.240 (4) | O2—C17 | 1.229 (5) |
| N1—C5 | 1.350 (5) | N3—C17 | 1.347 (6) |
| N1—N2 | 1.359 (5) | N3—N4 | 1.373 (4) |
| N1—H1A | 0.77 (4) | N3—H3A | 0.84 (4) |
| N2—C6 | 1.282 (5) | N4—C18 | 1.260 (5) |
| Cl1—C8 | 1.743 (4) | Cl2—C20 | 1.733 (4) |
| C1—C2 | 1.314 (8) | C13—C14 | 1.342 (7) |
| C1—H1 | 0.9300 | C13—H13 | 0.9300 |
| C2—C3 | 1.453 (6) | C14—C15 | 1.427 (6) |
| C2—H2B | 0.9300 | C14—H14A | 0.9300 |
| C3—C4 | 1.445 (7) | C15—C16 | 1.407 (7) |
| C3—H3 | 0.9300 | C15—H15 | 0.9300 |
| C4—C5 | 1.479 (5) | C16—C17 | 1.478 (5) |
| C6—C7 | 1.454 (6) | C18—C19 | 1.459 (6) |
| C6—H6A | 0.9300 | C18—H18A | 0.9300 |
| C7—C8 | 1.393 (6) | C19—C20 | 1.394 (6) |
| C7—C12 | 1.396 (5) | C19—C24 | 1.400 (5) |
| C8—C9 | 1.395 (6) | C20—C21 | 1.401 (6) |
| C9—C10 | 1.371 (6) | C21—C22 | 1.373 (6) |
| C9—H9A | 0.9300 | C21—H21A | 0.9300 |
| C10—C11 | 1.358 (7) | C22—C23 | 1.399 (7) |
| C10—H10A | 0.9300 | C22—H22A | 0.9300 |
| C11—C12 | 1.390 (6) | C23—C24 | 1.354 (6) |
| C11—H11A | 0.9300 | C23—H23A | 0.9300 |
| C12—H12A | 0.9300 | C24—H24A | 0.9300 |
| C1—S1—C4 | 90.9 (3) | C13—S2—C16 | 91.2 (2) |
| C5—N1—N2 | 123.0 (4) | C17—N3—N4 | 123.1 (3) |
| C5—N1—H1A | 120 (4) | C17—N3—H3A | 117 (3) |
| N2—N1—H1A | 115 (4) | N4—N3—H3A | 120 (3) |
| C6—N2—N1 | 115.9 (3) | C18—N4—N3 | 116.5 (3) |
| C2—C1—S1 | 113.6 (4) | C14—C13—S2 | 113.8 (4) |
| C2—C1—H1 | 123.2 | C14—C13—H13 | 123.1 |
| S1—C1—H1 | 123.2 | S2—C13—H13 | 123.1 |
| C1—C2—C3 | 116.2 (5) | C13—C14—C15 | 113.3 (5) |
| C1—C2—H2B | 121.9 | C13—C14—H14A | 123.3 |
| C3—C2—H2B | 121.9 | C15—C14—H14A | 123.3 |
| C4—C3—C2 | 105.8 (4) | C16—C15—C14 | 109.8 (4) |
| C4—C3—H3 | 127.1 | C16—C15—H15 | 125.1 |
| C2—C3—H3 | 127.1 | C14—C15—H15 | 125.1 |
| C3—C4—C5 | 120.0 (4) | C15—C16—C17 | 121.2 (4) |
| C3—C4—S1 | 113.4 (3) | C15—C16—S2 | 111.8 (3) |
| C5—C4—S1 | 126.6 (4) | C17—C16—S2 | 126.9 (4) |
| O1—C5—N1 | 119.6 (3) | O2—C17—N3 | 119.6 (4) |
| O1—C5—C4 | 119.5 (4) | O2—C17—C16 | 119.4 (4) |
| N1—C5—C4 | 120.9 (4) | N3—C17—C16 | 121.1 (4) |
| N2—C6—C7 | 120.4 (3) | N4—C18—C19 | 121.0 (3) |
| N2—C6—H6A | 119.8 | N4—C18—H18A | 119.5 |
| C7—C6—H6A | 119.8 | C19—C18—H18A | 119.5 |
| C8—C7—C12 | 116.7 (4) | C20—C19—C24 | 116.6 (4) |
| C8—C7—C6 | 122.0 (3) | C20—C19—C18 | 122.3 (3) |
| C12—C7—C6 | 121.2 (4) | C24—C19—C18 | 121.1 (4) |
| C7—C8—C9 | 122.5 (4) | C19—C20—C21 | 121.5 (4) |
| C7—C8—Cl1 | 120.5 (3) | C19—C20—Cl2 | 120.8 (3) |
| C9—C8—Cl1 | 117.0 (3) | C21—C20—Cl2 | 117.6 (3) |
| C10—C9—C8 | 118.3 (4) | C22—C21—C20 | 120.1 (4) |
| C10—C9—H9A | 120.8 | C22—C21—H21A | 119.9 |
| C8—C9—H9A | 120.8 | C20—C21—H21A | 119.9 |
| C11—C10—C9 | 121.2 (4) | C21—C22—C23 | 118.7 (4) |
| C11—C10—H10A | 119.4 | C21—C22—H22A | 120.6 |
| C9—C10—H10A | 119.4 | C23—C22—H22A | 120.6 |
| C10—C11—C12 | 120.4 (4) | C24—C23—C22 | 120.8 (4) |
| C10—C11—H11A | 119.8 | C24—C23—H23A | 119.6 |
| C12—C11—H11A | 119.8 | C22—C23—H23A | 119.6 |
| C11—C12—C7 | 120.9 (4) | C23—C24—C19 | 122.3 (4) |
| C11—C12—H12A | 119.6 | C23—C24—H24A | 118.9 |
| C7—C12—H12A | 119.6 | C19—C24—H24A | 118.9 |
| C5—N1—N2—C6 | −178.9 (4) | C17—N3—N4—C18 | 179.7 (4) |
| C4—S1—C1—C2 | 1.1 (4) | C16—S2—C13—C14 | 0.5 (5) |
| S1—C1—C2—C3 | −0.2 (6) | S2—C13—C14—C15 | 0.3 (7) |
| C1—C2—C3—C4 | −1.1 (6) | C13—C14—C15—C16 | −1.1 (7) |
| C2—C3—C4—C5 | −176.0 (4) | C14—C15—C16—C17 | −176.5 (4) |
| C2—C3—C4—S1 | 1.9 (5) | C14—C15—C16—S2 | 1.5 (5) |
| C1—S1—C4—C3 | −1.8 (3) | C13—S2—C16—C15 | −1.2 (4) |
| C1—S1—C4—C5 | 176.0 (4) | C13—S2—C16—C17 | 176.7 (4) |
| N2—N1—C5—O1 | −179.1 (3) | N4—N3—C17—O2 | −179.6 (3) |
| N2—N1—C5—C4 | 0.7 (6) | N4—N3—C17—C16 | 1.6 (6) |
| C3—C4—C5—O1 | 5.1 (6) | C15—C16—C17—O2 | 8.7 (6) |
| S1—C4—C5—O1 | −172.5 (3) | S2—C16—C17—O2 | −168.9 (3) |
| C3—C4—C5—N1 | −174.7 (4) | C15—C16—C17—N3 | −172.5 (4) |
| S1—C4—C5—N1 | 7.6 (6) | S2—C16—C17—N3 | 9.9 (6) |
| N1—N2—C6—C7 | 177.5 (3) | N3—N4—C18—C19 | 178.0 (3) |
| N2—C6—C7—C8 | −179.1 (3) | N4—C18—C19—C20 | −179.3 (3) |
| N2—C6—C7—C12 | −0.2 (6) | N4—C18—C19—C24 | −0.1 (5) |
| C12—C7—C8—C9 | −1.3 (6) | C24—C19—C20—C21 | −0.6 (5) |
| C6—C7—C8—C9 | 177.6 (4) | C18—C19—C20—C21 | 178.7 (3) |
| C12—C7—C8—Cl1 | 179.4 (3) | C24—C19—C20—Cl2 | −177.9 (3) |
| C6—C7—C8—Cl1 | −1.7 (5) | C18—C19—C20—Cl2 | 1.3 (5) |
| C7—C8—C9—C10 | 0.5 (6) | C19—C20—C21—C22 | 0.0 (6) |
| Cl1—C8—C9—C10 | 179.9 (4) | Cl2—C20—C21—C22 | 177.4 (3) |
| C8—C9—C10—C11 | −0.2 (7) | C20—C21—C22—C23 | 0.8 (6) |
| C9—C10—C11—C12 | 0.7 (7) | C21—C22—C23—C24 | −1.0 (7) |
| C10—C11—C12—C7 | −1.5 (6) | C22—C23—C24—C19 | 0.3 (6) |
| C8—C7—C12—C11 | 1.7 (6) | C20—C19—C24—C23 | 0.5 (6) |
| C6—C7—C12—C11 | −177.2 (4) | C18—C19—C24—C23 | −178.8 (4) |
| H··· | ||||
| N3—H3 | 0.84 (4) | 2.02 (5) | 2.856 (4) | 175 (4) |
| N1—H1 | 0.77 (4) | 2.09 (4) | 2.845 (5) | 166 (5) |
| C10—H10 | 0.93 | 2.93 | 3.758 (5) | 149 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.84 (4) | 2.02 (5) | 2.856 (4) | 175 (4) |
| N1—H1 | 0.77 (4) | 2.09 (4) | 2.845 (5) | 166 (5) |
| C10—H10 | 0.93 | 2.93 | 3.758 (5) | 149 |
Symmetry codes: (i) ; (ii) ; (iii) .