Literature DB >> 24427070

N'-[(E)-2-Chloro-benzyl-idene]thio-phene-2-carbohydrazide.

Ismail Warad1, Salim F Haddad2, Mousa Al-Noaimi3, Belkheir Hammouti4, Taibi Ben Hadda5.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C12H9ClN2OS, a Schiff base derived from hydrazide, in which the dihedral angles between the thio-phene and benzene rings are 3.6 (3) and 7.3 (3)°. In the crystal, the two independent mol-ecules are arranged about an approximate non-crystallographic inversion center and are connected by two N-H⋯O hydrogen bonds. Weak C-H⋯Cl contacts are also present. Conversely, there are neither significant aromatic stacking inter-actions nor contacts involving S atoms.

Entities:  

Year:  2013        PMID: 24427070      PMCID: PMC3884466          DOI: 10.1107/S1600536813020850

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of Schiff bases, see: Cimerman et al. (1997 ▶); Ren et al. (2002 ▶). For related structures, see: Warad et al. (2009 ▶); Jiang (2010 ▶, 2011 ▶); Li & Jian (2010 ▶); Li & Meng (2010 ▶).

Experimental

Crystal data

C12H9ClN2OS M = 264.72 Orthorhombic, a = 24.9465 (15) Å b = 4.3709 (3) Å c = 21.8091 (13) Å V = 2378.0 (2) Å3 Z = 8 Mo Kα radiation μ = 0.48 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.870, T max = 0.954 9965 measured reflections 3845 independent reflections 3341 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.113 S = 1.08 3845 reflections 316 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813020850/bh2481sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813020850/bh2481Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813020850/bh2481Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9ClN2OSF(000) = 1088
Mr = 264.72Dx = 1.479 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3090 reflections
a = 24.9465 (15) Åθ = 2.9–29.2°
b = 4.3709 (3) ŵ = 0.48 mm1
c = 21.8091 (13) ÅT = 293 K
V = 2378.0 (2) Å3Parallelpiped, colourless
Z = 80.30 × 0.20 × 0.10 mm
Agilent Xcalibur Eos diffractometer3845 independent reflections
Radiation source: Enhance (Mo) X-ray Source3341 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
Detector resolution: 16.0534 pixels mm-1θmax = 25.0°, θmin = 3.2°
ω scansh = −29→29
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −5→4
Tmin = 0.870, Tmax = 0.954l = −25→21
9965 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0575P)2 + 0.3988P] where P = (Fo2 + 2Fc2)/3
3845 reflections(Δ/σ)max < 0.001
316 parametersΔρmax = 0.32 e Å3
1 restraintΔρmin = −0.32 e Å3
0 constraints
xyzUiso*/Ueq
S10.30063 (4)0.4329 (3)0.72298 (6)0.0619 (3)
O10.17505 (11)−0.0648 (6)0.67301 (13)0.0509 (7)
N10.17938 (14)0.2450 (8)0.7547 (2)0.0414 (9)
H1A0.1555 (17)0.166 (10)0.770 (2)0.046 (13)*
N20.20518 (12)0.4548 (7)0.78995 (15)0.0363 (7)
Cl10.11381 (5)0.7410 (3)0.94945 (7)0.0663 (4)
C10.34789 (17)0.3764 (12)0.6679 (2)0.0598 (12)
H10.38230.45760.67010.072*
C20.33115 (19)0.2071 (12)0.6219 (3)0.0684 (16)
H2B0.35320.16010.58890.082*
C30.27627 (15)0.0975 (10)0.6257 (2)0.0502 (11)
H30.2582−0.02100.59690.060*
C40.25557 (16)0.2105 (8)0.6832 (2)0.0412 (11)
C50.20111 (14)0.1229 (9)0.70353 (18)0.0372 (9)
C60.17984 (14)0.5461 (8)0.83769 (19)0.0376 (9)
H6A0.14540.47450.84540.045*
C70.20468 (14)0.7612 (8)0.8799 (2)0.0357 (10)
C80.17872 (15)0.8624 (8)0.93273 (19)0.0427 (9)
C90.20295 (19)1.0600 (10)0.9746 (2)0.0527 (11)
H9A0.18491.12301.00980.063*
C100.25406 (18)1.1590 (11)0.9628 (3)0.0580 (13)
H10A0.27071.29140.99020.070*
C110.28077 (17)1.0671 (9)0.9117 (2)0.0551 (11)
H11A0.31561.13520.90480.066*
C120.25639 (14)0.8721 (9)0.8698 (2)0.0451 (10)
H12A0.27480.81470.83450.054*
S20.45222 (4)−0.0291 (3)0.74612 (7)0.0598 (3)
O20.57997 (11)−0.5028 (7)0.79635 (13)0.0506 (7)
N30.57520 (13)−0.1945 (7)0.71524 (18)0.0367 (8)
H3A0.6055 (17)−0.260 (9)0.705 (2)0.050 (13)*
N40.54883 (11)0.0161 (7)0.67961 (15)0.0365 (7)
Cl20.63843 (4)0.3111 (3)0.52014 (6)0.0597 (3)
C130.40651 (17)−0.0776 (12)0.8022 (3)0.0656 (14)
H130.3718−0.00010.80000.079*
C140.4247 (2)−0.2383 (13)0.8504 (3)0.0694 (17)
H14A0.4040−0.28360.88460.083*
C150.47921 (17)−0.3327 (11)0.8438 (2)0.0565 (12)
H150.4986−0.44260.87280.068*
C160.49924 (15)−0.2344 (8)0.7868 (2)0.0384 (10)
C170.55391 (15)−0.3165 (9)0.7665 (2)0.0401 (10)
C180.57349 (13)0.1124 (8)0.63301 (19)0.0356 (8)
H18A0.60820.04420.62530.043*
C190.54850 (14)0.3293 (8)0.5909 (2)0.0352 (9)
C200.57460 (14)0.4371 (8)0.53871 (18)0.0390 (9)
C210.54954 (18)0.6404 (9)0.4982 (2)0.0497 (10)
H21A0.56780.70940.46360.060*
C220.49814 (19)0.7381 (9)0.5093 (3)0.0558 (14)
H22A0.48110.87100.48230.067*
C230.47194 (17)0.6338 (10)0.5620 (2)0.0523 (11)
H23A0.43730.70060.57050.063*
C240.49638 (16)0.4368 (9)0.6010 (2)0.0441 (10)
H24A0.47790.37060.63550.053*
U11U22U33U12U13U23
S10.0423 (5)0.0769 (8)0.0665 (8)−0.0039 (6)0.0064 (5)−0.0024 (7)
O10.0488 (15)0.0610 (17)0.0427 (17)−0.0089 (14)0.0008 (13)−0.0127 (15)
N10.0348 (18)0.0425 (19)0.047 (3)−0.0051 (15)0.0052 (18)−0.0039 (16)
N20.0339 (15)0.0370 (17)0.0382 (19)−0.0004 (13)0.0010 (14)−0.0001 (15)
Cl10.0465 (6)0.0949 (9)0.0576 (9)−0.0116 (6)0.0170 (6)−0.0179 (7)
C10.039 (2)0.073 (3)0.067 (4)0.004 (2)0.014 (2)0.008 (3)
C20.056 (3)0.080 (4)0.070 (5)0.017 (3)0.026 (3)0.006 (3)
C30.038 (2)0.058 (2)0.055 (3)0.0039 (18)0.014 (2)0.003 (2)
C40.038 (2)0.043 (2)0.043 (3)0.0051 (16)0.0018 (19)0.0027 (19)
C50.0393 (19)0.042 (2)0.031 (2)0.0044 (17)0.0010 (16)0.0014 (19)
C60.0319 (17)0.039 (2)0.042 (2)−0.0008 (16)0.0034 (16)0.0036 (18)
C70.035 (2)0.0319 (19)0.040 (3)0.0033 (14)0.0008 (17)0.0033 (17)
C80.0385 (19)0.042 (2)0.048 (3)0.0041 (17)0.0052 (17)0.001 (2)
C90.064 (3)0.052 (3)0.042 (3)0.003 (2)−0.001 (2)−0.011 (2)
C100.061 (3)0.053 (3)0.059 (4)−0.007 (2)−0.010 (3)−0.015 (3)
C110.041 (2)0.058 (3)0.067 (3)−0.010 (2)−0.008 (2)0.006 (3)
C120.040 (2)0.049 (2)0.046 (3)−0.0008 (18)0.0025 (18)−0.003 (2)
S20.0419 (5)0.0785 (8)0.0590 (7)0.0063 (5)0.0047 (5)0.0152 (7)
O20.0478 (15)0.0633 (17)0.0407 (17)0.0165 (13)0.0013 (14)0.0141 (15)
N30.0345 (17)0.0403 (17)0.035 (2)0.0015 (14)0.0038 (16)0.0036 (16)
N40.0341 (15)0.0363 (16)0.039 (2)0.0009 (13)0.0017 (14)0.0008 (15)
Cl20.0472 (6)0.0745 (7)0.0574 (9)−0.0028 (5)0.0165 (6)0.0058 (7)
C130.040 (2)0.081 (3)0.076 (4)0.006 (2)0.009 (2)0.019 (3)
C140.067 (3)0.088 (4)0.053 (4)0.006 (3)0.026 (3)0.024 (3)
C150.042 (2)0.072 (3)0.056 (3)0.008 (2)0.015 (2)0.006 (3)
C160.041 (2)0.039 (2)0.035 (3)−0.0035 (16)0.0003 (19)0.0010 (17)
C170.0366 (19)0.040 (2)0.044 (3)−0.0036 (17)−0.0027 (17)−0.0040 (19)
C180.0311 (16)0.0359 (19)0.040 (2)−0.0023 (15)0.0006 (16)−0.0043 (18)
C190.037 (2)0.0332 (19)0.035 (3)−0.0094 (16)−0.0012 (17)−0.0077 (17)
C200.0425 (19)0.038 (2)0.037 (2)−0.0054 (16)0.0015 (16)−0.0065 (18)
C210.070 (3)0.044 (2)0.036 (2)−0.010 (2)−0.002 (2)0.005 (2)
C220.066 (3)0.044 (2)0.058 (4)0.005 (2)−0.020 (3)0.003 (2)
C230.044 (2)0.050 (2)0.062 (3)0.004 (2)−0.005 (2)−0.003 (2)
C240.041 (2)0.041 (2)0.050 (3)−0.0003 (17)0.0006 (17)−0.003 (2)
S1—C11.701 (5)S2—C131.686 (5)
S1—C41.720 (5)S2—C161.723 (4)
O1—C51.240 (4)O2—C171.229 (5)
N1—C51.350 (5)N3—C171.347 (6)
N1—N21.359 (5)N3—N41.373 (4)
N1—H1A0.77 (4)N3—H3A0.84 (4)
N2—C61.282 (5)N4—C181.260 (5)
Cl1—C81.743 (4)Cl2—C201.733 (4)
C1—C21.314 (8)C13—C141.342 (7)
C1—H10.9300C13—H130.9300
C2—C31.453 (6)C14—C151.427 (6)
C2—H2B0.9300C14—H14A0.9300
C3—C41.445 (7)C15—C161.407 (7)
C3—H30.9300C15—H150.9300
C4—C51.479 (5)C16—C171.478 (5)
C6—C71.454 (6)C18—C191.459 (6)
C6—H6A0.9300C18—H18A0.9300
C7—C81.393 (6)C19—C201.394 (6)
C7—C121.396 (5)C19—C241.400 (5)
C8—C91.395 (6)C20—C211.401 (6)
C9—C101.371 (6)C21—C221.373 (6)
C9—H9A0.9300C21—H21A0.9300
C10—C111.358 (7)C22—C231.399 (7)
C10—H10A0.9300C22—H22A0.9300
C11—C121.390 (6)C23—C241.354 (6)
C11—H11A0.9300C23—H23A0.9300
C12—H12A0.9300C24—H24A0.9300
C1—S1—C490.9 (3)C13—S2—C1691.2 (2)
C5—N1—N2123.0 (4)C17—N3—N4123.1 (3)
C5—N1—H1A120 (4)C17—N3—H3A117 (3)
N2—N1—H1A115 (4)N4—N3—H3A120 (3)
C6—N2—N1115.9 (3)C18—N4—N3116.5 (3)
C2—C1—S1113.6 (4)C14—C13—S2113.8 (4)
C2—C1—H1123.2C14—C13—H13123.1
S1—C1—H1123.2S2—C13—H13123.1
C1—C2—C3116.2 (5)C13—C14—C15113.3 (5)
C1—C2—H2B121.9C13—C14—H14A123.3
C3—C2—H2B121.9C15—C14—H14A123.3
C4—C3—C2105.8 (4)C16—C15—C14109.8 (4)
C4—C3—H3127.1C16—C15—H15125.1
C2—C3—H3127.1C14—C15—H15125.1
C3—C4—C5120.0 (4)C15—C16—C17121.2 (4)
C3—C4—S1113.4 (3)C15—C16—S2111.8 (3)
C5—C4—S1126.6 (4)C17—C16—S2126.9 (4)
O1—C5—N1119.6 (3)O2—C17—N3119.6 (4)
O1—C5—C4119.5 (4)O2—C17—C16119.4 (4)
N1—C5—C4120.9 (4)N3—C17—C16121.1 (4)
N2—C6—C7120.4 (3)N4—C18—C19121.0 (3)
N2—C6—H6A119.8N4—C18—H18A119.5
C7—C6—H6A119.8C19—C18—H18A119.5
C8—C7—C12116.7 (4)C20—C19—C24116.6 (4)
C8—C7—C6122.0 (3)C20—C19—C18122.3 (3)
C12—C7—C6121.2 (4)C24—C19—C18121.1 (4)
C7—C8—C9122.5 (4)C19—C20—C21121.5 (4)
C7—C8—Cl1120.5 (3)C19—C20—Cl2120.8 (3)
C9—C8—Cl1117.0 (3)C21—C20—Cl2117.6 (3)
C10—C9—C8118.3 (4)C22—C21—C20120.1 (4)
C10—C9—H9A120.8C22—C21—H21A119.9
C8—C9—H9A120.8C20—C21—H21A119.9
C11—C10—C9121.2 (4)C21—C22—C23118.7 (4)
C11—C10—H10A119.4C21—C22—H22A120.6
C9—C10—H10A119.4C23—C22—H22A120.6
C10—C11—C12120.4 (4)C24—C23—C22120.8 (4)
C10—C11—H11A119.8C24—C23—H23A119.6
C12—C11—H11A119.8C22—C23—H23A119.6
C11—C12—C7120.9 (4)C23—C24—C19122.3 (4)
C11—C12—H12A119.6C23—C24—H24A118.9
C7—C12—H12A119.6C19—C24—H24A118.9
C5—N1—N2—C6−178.9 (4)C17—N3—N4—C18179.7 (4)
C4—S1—C1—C21.1 (4)C16—S2—C13—C140.5 (5)
S1—C1—C2—C3−0.2 (6)S2—C13—C14—C150.3 (7)
C1—C2—C3—C4−1.1 (6)C13—C14—C15—C16−1.1 (7)
C2—C3—C4—C5−176.0 (4)C14—C15—C16—C17−176.5 (4)
C2—C3—C4—S11.9 (5)C14—C15—C16—S21.5 (5)
C1—S1—C4—C3−1.8 (3)C13—S2—C16—C15−1.2 (4)
C1—S1—C4—C5176.0 (4)C13—S2—C16—C17176.7 (4)
N2—N1—C5—O1−179.1 (3)N4—N3—C17—O2−179.6 (3)
N2—N1—C5—C40.7 (6)N4—N3—C17—C161.6 (6)
C3—C4—C5—O15.1 (6)C15—C16—C17—O28.7 (6)
S1—C4—C5—O1−172.5 (3)S2—C16—C17—O2−168.9 (3)
C3—C4—C5—N1−174.7 (4)C15—C16—C17—N3−172.5 (4)
S1—C4—C5—N17.6 (6)S2—C16—C17—N39.9 (6)
N1—N2—C6—C7177.5 (3)N3—N4—C18—C19178.0 (3)
N2—C6—C7—C8−179.1 (3)N4—C18—C19—C20−179.3 (3)
N2—C6—C7—C12−0.2 (6)N4—C18—C19—C24−0.1 (5)
C12—C7—C8—C9−1.3 (6)C24—C19—C20—C21−0.6 (5)
C6—C7—C8—C9177.6 (4)C18—C19—C20—C21178.7 (3)
C12—C7—C8—Cl1179.4 (3)C24—C19—C20—Cl2−177.9 (3)
C6—C7—C8—Cl1−1.7 (5)C18—C19—C20—Cl21.3 (5)
C7—C8—C9—C100.5 (6)C19—C20—C21—C220.0 (6)
Cl1—C8—C9—C10179.9 (4)Cl2—C20—C21—C22177.4 (3)
C8—C9—C10—C11−0.2 (7)C20—C21—C22—C230.8 (6)
C9—C10—C11—C120.7 (7)C21—C22—C23—C24−1.0 (7)
C10—C11—C12—C7−1.5 (6)C22—C23—C24—C190.3 (6)
C8—C7—C12—C111.7 (6)C20—C19—C24—C230.5 (6)
C6—C7—C12—C11−177.2 (4)C18—C19—C24—C23−178.8 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O1i0.84 (4)2.02 (5)2.856 (4)175 (4)
N1—H1A···O2ii0.77 (4)2.09 (4)2.845 (5)166 (5)
C10—H10A···Cl2iii0.932.933.758 (5)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O1i 0.84 (4)2.02 (5)2.856 (4)175 (4)
N1—H1A⋯O2ii 0.77 (4)2.09 (4)2.845 (5)166 (5)
C10—H10A⋯Cl2iii 0.932.933.758 (5)149

Symmetry codes: (i) ; (ii) ; (iii) .

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