Literature DB >> 21580380

2,7-Bis-(trichloro-meth-yl)-1,8-naphthyridine.

Hoong-Kun Fun, Suchada Chantrapromma, Annada C Maity, Shyamaprosad Goswami.   

Abstract

The complete mol-ecule of the title compound, C(10)H(4)Cl(6)N(2), is generated by crystallographic twofold symmetry, with two C atoms lying on the rotation axis; the 1,8-naphthyridine ring is almost planar with an r.m.s. deviation of 0.0002 Å. In the crystal structure, the mol-ecules are stacked in an anti-parallel manner along [001]. Short Cl⋯Cl [3.3502 (4)] and Cl⋯N [3.2004 (11)-3.2220 (10) Å] contacts are observed in the crystal structure.

Entities:  

Year:  2010        PMID: 21580380      PMCID: PMC2983609          DOI: 10.1107/S1600536810005234

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For graph-set notation of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Fun et al. (2009 ▶); Wang et al. (2008 ▶). For background to the properties and applications of 1,8-naphthyridines, see: Braccio et al. (2008 ▶); Chen et al. (2001 ▶); Ferrarini et al. (1998 ▶; 2000 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H4Cl6N2 M = 364.85 Monoclinic, a = 19.9154 (4) Å b = 6.5977 (1) Å c = 10.5975 (2) Å β = 111.483 (2)° V = 1295.73 (4) Å3 Z = 4 Mo Kα radiation μ = 1.30 mm−1 T = 100 K 0.40 × 0.26 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.624, T max = 0.944 28872 measured reflections 4010 independent reflections 3136 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.089 S = 1.05 4010 reflections 91 parameters All H-atom parameters refined Δρmax = 0.64 e Å−3 Δρmin = −0.56 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810005234/hb5307sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005234/hb5307Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H4Cl6N2F(000) = 720
Mr = 364.85Dx = 1.870 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4010 reflections
a = 19.9154 (4) Åθ = 2.2–40.0°
b = 6.5977 (1) ŵ = 1.30 mm1
c = 10.5975 (2) ÅT = 100 K
β = 111.483 (2)°Slab, colorless
V = 1295.73 (4) Å30.40 × 0.26 × 0.05 mm
Z = 4
Bruker APEXII CCD diffractometer4010 independent reflections
Radiation source: sealed tube3136 reflections with I > 2σ(I)
graphiteRint = 0.053
φ and ω scansθmax = 40.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −36→34
Tmin = 0.624, Tmax = 0.944k = −11→11
28872 measured reflectionsl = −18→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089All H-atom parameters refined
S = 1.05w = 1/[σ2(Fo2) + (0.0403P)2 + 0.889P] where P = (Fo2 + 2Fc2)/3
4010 reflections(Δ/σ)max = 0.002
91 parametersΔρmax = 0.64 e Å3
0 restraintsΔρmin = −0.56 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.090117 (15)0.01827 (4)1.12884 (3)0.01585 (6)
Cl20.194324 (15)0.02817 (4)0.99732 (3)0.01645 (6)
Cl30.202697 (15)0.31574 (4)1.20815 (3)0.01848 (6)
N10.04657 (5)0.21807 (14)0.85379 (9)0.01358 (15)
C10.09721 (6)0.53166 (17)0.96675 (12)0.01599 (18)
C20.09266 (6)0.31794 (16)0.95656 (11)0.01302 (16)
C30.00000.3281 (2)0.75000.0124 (2)
C40.00000.5430 (2)0.75000.0136 (2)
C5−0.05049 (6)0.64457 (17)0.63741 (11)0.01611 (18)
C60.14272 (6)0.17959 (16)1.06796 (10)0.01333 (16)
H6−0.0513 (10)0.788 (3)0.6355 (18)0.021 (4)*
H10.1292 (10)0.598 (3)1.038 (2)0.024 (5)*
U11U22U33U12U13U23
Cl10.01798 (11)0.01518 (11)0.01362 (10)−0.00263 (8)0.00487 (8)0.00164 (8)
Cl20.01578 (11)0.01700 (12)0.01533 (11)0.00202 (8)0.00425 (8)0.00040 (8)
Cl30.02005 (12)0.01629 (11)0.01330 (11)−0.00383 (9)−0.00076 (8)−0.00181 (8)
N10.0155 (4)0.0114 (3)0.0115 (3)−0.0004 (3)0.0021 (3)0.0002 (3)
C10.0186 (4)0.0110 (4)0.0152 (4)−0.0022 (3)0.0025 (4)−0.0012 (3)
C20.0145 (4)0.0113 (4)0.0123 (4)−0.0008 (3)0.0038 (3)0.0001 (3)
C30.0137 (5)0.0101 (5)0.0117 (5)0.0000.0027 (4)0.000
C40.0173 (6)0.0095 (5)0.0132 (5)0.0000.0045 (5)0.000
C50.0198 (5)0.0104 (4)0.0155 (4)0.0011 (3)0.0033 (4)0.0009 (3)
C60.0148 (4)0.0122 (4)0.0113 (4)−0.0015 (3)0.0028 (3)−0.0007 (3)
Cl1—C61.7725 (11)C2—C61.5358 (15)
Cl2—C61.7827 (11)C3—N1i1.3602 (12)
Cl3—C61.7723 (10)C3—C41.418 (2)
N1—C21.3156 (14)C4—C51.4160 (13)
N1—C31.3602 (12)C4—C5i1.4160 (13)
C1—C5i1.3736 (16)C5—C1i1.3737 (16)
C1—C21.4145 (15)C5—H60.95 (2)
C1—H10.90 (2)
C2—N1—C3117.68 (10)C5—C4—C3118.24 (7)
C5i—C1—C2118.28 (10)C5i—C4—C3118.24 (7)
C5i—C1—H1118.1 (14)C1i—C5—C4118.91 (11)
C2—C1—H1123.6 (14)C1i—C5—H6121.6 (11)
N1—C2—C1124.62 (10)C4—C5—H6119.5 (11)
N1—C2—C6113.48 (9)C2—C6—Cl3113.05 (7)
C1—C2—C6121.90 (9)C2—C6—Cl1109.44 (7)
N1—C3—N1i115.46 (13)Cl3—C6—Cl1107.82 (6)
N1—C3—C4122.27 (6)C2—C6—Cl2108.79 (7)
N1i—C3—C4122.27 (6)Cl3—C6—Cl2108.72 (6)
C5—C4—C5i123.51 (14)Cl1—C6—Cl2108.95 (6)
C3—N1—C2—C10.00 (16)N1i—C3—C4—C5i179.98 (8)
C3—N1—C2—C6−179.95 (8)C5i—C4—C5—C1i180.00 (13)
C5i—C1—C2—N1−0.02 (19)C3—C4—C5—C1i0.00 (13)
C5i—C1—C2—C6179.92 (11)N1—C2—C6—Cl3−178.20 (8)
C2—N1—C3—N1i−179.98 (11)C1—C2—C6—Cl31.85 (14)
C2—N1—C3—C40.02 (11)N1—C2—C6—Cl1−58.01 (11)
N1—C3—C4—C5179.98 (8)C1—C2—C6—Cl1122.04 (10)
N1i—C3—C4—C5−0.02 (8)N1—C2—C6—Cl260.93 (11)
N1—C3—C4—C5i−0.02 (8)C1—C2—C6—Cl2−119.02 (10)
D—H···AD—HH···AD···AD—H···A
C1—H1···Cl30.90 (2)2.63 (2)3.0085 (12)106.0 (14)
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