| Literature DB >> 21200676 |
De-Hui Wang, Yao-Ming Yu, Jian-Hua Chen, Wen-Fu Fu.
Abstract
The air-stable title compound, C(12)H(13)N(3)O, which is of inter-est due to its anti-bacterial properties, is an almost planar mol-ecule in which the ten atoms forming the 1,8-naphthyridine ring have an r.m.s. deviation of 0.03 Å from the least-squares plane calculated using the ten atoms. The plane of the acetyl-amino group is slightly inclined [11.7 (2)°] to the plane of the 1,8-naphthyridine ring.Entities:
Year: 2007 PMID: 21200676 PMCID: PMC2915183 DOI: 10.1107/S1600536807042948
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13N3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1274 reflections |
| θ = 2.7–25.2º | |
| µ = 0.09 mm−1 | |
| β = 91.883 (14)º | Block, pale yellow |
| 0.52 × 0.36 × 0.24 mm | |
| SMART 1K CCD diffractometer | 1959 independent reflections |
| Radiation source: fine-focus sealed tube | 1169 reflections with |
| Monochromator: graphite | |
| Detector resolution: 10 pixels mm-1 | θmax = 25.0º |
| θmin = 2.1º | |
| φ and ω scans | |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2002) | |
| 5375 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 1959 reflections | Δρmax = 0.27 e Å−3 |
| 145 parameters | Δρmin = −0.19 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.8038 (2) | 0.1591 (3) | 0.16857 (10) | 0.0416 (5) | |
| N2 | 0.6692 (2) | −0.1164 (3) | 0.15749 (10) | 0.0443 (6) | |
| N3 | 0.9292 (3) | 0.4340 (3) | 0.18935 (10) | 0.0483 (6) | |
| H3 | 0.8956 | 0.4199 | 0.2314 | 0.058* | |
| O1 | 1.0871 (3) | 0.6171 (3) | 0.12288 (10) | 0.0856 (8) | |
| C1 | 0.7455 (3) | 0.0253 (3) | 0.12480 (11) | 0.0391 (6) | |
| C2 | 0.6113 (3) | −0.2514 (4) | 0.11782 (13) | 0.0480 (7) | |
| C3 | 0.6280 (3) | −0.2537 (4) | 0.04464 (14) | 0.0546 (7) | |
| H3A | 0.5891 | −0.3546 | 0.0192 | 0.066* | |
| C4 | 0.6991 (3) | −0.1130 (4) | 0.01004 (12) | 0.0472 (7) | |
| C5 | 0.7602 (3) | 0.0348 (3) | 0.05134 (12) | 0.0410 (6) | |
| C6 | 0.8324 (3) | 0.1936 (4) | 0.02437 (13) | 0.0498 (7) | |
| H6 | 0.8425 | 0.2063 | −0.0238 | 0.060* | |
| C7 | 0.8875 (3) | 0.3283 (4) | 0.06768 (13) | 0.0519 (7) | |
| H7 | 0.9331 | 0.4351 | 0.0499 | 0.062* | |
| C8 | 0.8742 (3) | 0.3032 (3) | 0.14080 (12) | 0.0415 (6) | |
| C9 | 0.5235 (4) | −0.4030 (4) | 0.15366 (15) | 0.0654 (8) | |
| H9A | 0.5582 | −0.4054 | 0.2023 | 0.098* | |
| H9B | 0.5514 | −0.5173 | 0.1322 | 0.098* | |
| H9C | 0.4045 | −0.3839 | 0.1496 | 0.098* | |
| C10 | 0.7102 (4) | −0.1127 (4) | −0.06836 (13) | 0.0670 (9) | |
| H10A | 0.6876 | −0.2334 | −0.0861 | 0.100* | |
| H10B | 0.8208 | −0.0758 | −0.0809 | 0.100* | |
| H10C | 0.6291 | −0.0287 | −0.0882 | 0.100* | |
| C11 | 1.0292 (3) | 0.5810 (4) | 0.17874 (14) | 0.0531 (7) | |
| C12 | 1.0655 (4) | 0.6957 (4) | 0.24196 (16) | 0.0728 (9) | |
| H12A | 1.1689 | 0.7605 | 0.2364 | 0.109* | |
| H12B | 1.0749 | 0.6188 | 0.2827 | 0.109* | |
| H12C | 0.9759 | 0.7818 | 0.2475 | 0.109* |
| N1 | 0.0491 (12) | 0.0434 (12) | 0.0325 (11) | −0.0017 (10) | 0.0048 (9) | 0.0003 (10) |
| N2 | 0.0509 (12) | 0.0426 (13) | 0.0394 (12) | 0.0014 (10) | 0.0001 (9) | 0.0032 (10) |
| N3 | 0.0605 (13) | 0.0505 (14) | 0.0348 (11) | −0.0094 (11) | 0.0131 (10) | −0.0031 (10) |
| O1 | 0.1048 (17) | 0.1011 (18) | 0.0518 (13) | −0.0489 (14) | 0.0190 (12) | 0.0028 (12) |
| C1 | 0.0413 (13) | 0.0436 (15) | 0.0323 (13) | 0.0071 (11) | 0.0007 (10) | −0.0007 (11) |
| C2 | 0.0502 (15) | 0.0443 (16) | 0.0490 (16) | 0.0052 (12) | −0.0052 (13) | 0.0001 (13) |
| C3 | 0.0593 (17) | 0.0520 (18) | 0.0515 (17) | 0.0047 (14) | −0.0120 (14) | −0.0105 (14) |
| C4 | 0.0478 (15) | 0.0560 (17) | 0.0376 (14) | 0.0117 (13) | −0.0033 (11) | −0.0068 (13) |
| C5 | 0.0408 (13) | 0.0503 (16) | 0.0318 (13) | 0.0076 (12) | 0.0005 (10) | 0.0005 (12) |
| C6 | 0.0562 (15) | 0.0649 (18) | 0.0285 (13) | 0.0037 (14) | 0.0053 (11) | 0.0025 (13) |
| C7 | 0.0626 (17) | 0.0556 (17) | 0.0381 (14) | −0.0031 (14) | 0.0096 (12) | 0.0073 (13) |
| C8 | 0.0463 (14) | 0.0448 (15) | 0.0339 (13) | 0.0024 (12) | 0.0073 (11) | 0.0011 (12) |
| C9 | 0.073 (2) | 0.0542 (19) | 0.069 (2) | −0.0094 (15) | −0.0014 (16) | 0.0020 (15) |
| C10 | 0.078 (2) | 0.085 (2) | 0.0372 (15) | 0.0111 (17) | −0.0053 (14) | −0.0135 (15) |
| C11 | 0.0555 (16) | 0.0564 (18) | 0.0479 (16) | −0.0107 (14) | 0.0118 (13) | 0.0033 (14) |
| C12 | 0.087 (2) | 0.068 (2) | 0.065 (2) | −0.0249 (18) | 0.0199 (16) | −0.0170 (16) |
| N1—C8 | 1.313 (3) | C5—C6 | 1.401 (3) |
| N1—C1 | 1.357 (3) | C6—C7 | 1.349 (4) |
| N2—C2 | 1.318 (3) | C6—H6 | 0.9300 |
| N2—C1 | 1.363 (3) | C7—C8 | 1.414 (3) |
| N3—C11 | 1.357 (3) | C7—H7 | 0.9300 |
| N3—C8 | 1.392 (3) | C9—H9A | 0.9600 |
| N3—H3 | 0.8600 | C9—H9B | 0.9600 |
| O1—C11 | 1.204 (3) | C9—H9C | 0.9600 |
| C1—C5 | 1.411 (3) | C10—H10A | 0.9600 |
| C2—C3 | 1.406 (4) | C10—H10B | 0.9600 |
| C2—C9 | 1.488 (4) | C10—H10C | 0.9600 |
| C3—C4 | 1.356 (4) | C11—C12 | 1.489 (4) |
| C3—H3A | 0.9300 | C12—H12A | 0.9600 |
| C4—C5 | 1.414 (3) | C12—H12B | 0.9600 |
| C4—C10 | 1.501 (4) | C12—H12C | 0.9600 |
| C8—N1—C1 | 118.2 (2) | C8—C7—H7 | 120.8 |
| C2—N2—C1 | 117.4 (2) | N1—C8—N3 | 114.4 (2) |
| C11—N3—C8 | 128.2 (2) | N1—C8—C7 | 123.3 (2) |
| C11—N3—H3 | 115.9 | N3—C8—C7 | 122.3 (2) |
| C8—N3—H3 | 115.9 | C2—C9—H9A | 109.5 |
| N1—C1—N2 | 114.5 (2) | C2—C9—H9B | 109.5 |
| N1—C1—C5 | 122.5 (2) | H9A—C9—H9B | 109.5 |
| N2—C1—C5 | 123.0 (2) | C2—C9—H9C | 109.5 |
| N2—C2—C3 | 122.4 (2) | H9A—C9—H9C | 109.5 |
| N2—C2—C9 | 117.0 (2) | H9B—C9—H9C | 109.5 |
| C3—C2—C9 | 120.5 (2) | C4—C10—H10A | 109.5 |
| C4—C3—C2 | 121.9 (2) | C4—C10—H10B | 109.5 |
| C4—C3—H3A | 119.0 | H10A—C10—H10B | 109.5 |
| C2—C3—H3A | 119.0 | C4—C10—H10C | 109.5 |
| C3—C4—C5 | 116.7 (2) | H10A—C10—H10C | 109.5 |
| C3—C4—C10 | 121.7 (2) | H10B—C10—H10C | 109.5 |
| C5—C4—C10 | 121.6 (3) | O1—C11—N3 | 123.3 (3) |
| C6—C5—C1 | 117.0 (2) | O1—C11—C12 | 121.6 (3) |
| C6—C5—C4 | 124.5 (2) | N3—C11—C12 | 115.1 (2) |
| C1—C5—C4 | 118.5 (2) | C11—C12—H12A | 109.5 |
| C7—C6—C5 | 120.6 (2) | C11—C12—H12B | 109.5 |
| C7—C6—H6 | 119.7 | H12A—C12—H12B | 109.5 |
| C5—C6—H6 | 119.7 | C11—C12—H12C | 109.5 |
| C6—C7—C8 | 118.4 (2) | H12A—C12—H12C | 109.5 |
| C6—C7—H7 | 120.8 | H12B—C12—H12C | 109.5 |