| Literature DB >> 21583458 |
Hoong-Kun Fun, Chin Sing Yeap, Nirmal Kumar Das, Ajit Kumar Mahapatra, Shyamaprosad Goswami.
Abstract
The asymmetric unit of the title compound, C(10)H(10)N(2), contains one half-mol-ecule with the two shared C atoms lying on a twofold rotation axis. The 1,8-naphthyridine is almost planar with a dihedral angle of 0.42 (3)° between the fused pyridine rings. In the crystal, mol-ecules are linked into infinite chains along the c axis by inter-molecular C-H⋯N hydrogen bonds, generating R(2) (2)(8) ring motifs. In addition, the crystal structure is further stabilized by C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21583458 PMCID: PMC2977386 DOI: 10.1107/S1600536809024350
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H10N2 | |
| Orthorhombic, | Mo |
| Hall symbol: F 2 -2d | Cell parameters from 9922 reflections |
| θ = 3.0–40.6° | |
| µ = 0.08 mm−1 | |
| Block, colourless | |
| 0.57 × 0.41 × 0.24 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 1153 independent reflections |
| Radiation source: fine-focus sealed tube | 1116 reflections with |
| graphite | |
| φ and ω scans | θmax = 37.5°, θmin = 3.7° |
| Absorption correction: multi-scan ( | |
| 15454 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1153 reflections | (Δ/σ)max < 0.001 |
| 57 parameters | Δρmax = 0.51 e Å−3 |
| 1 restraint | Δρmin = −0.25 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N1 | 0.01020 (4) | 0.05928 (3) | 0.32666 (9) | 0.01333 (14) | |
| C1 | 0.0000 | 0.0000 | 0.44228 (13) | 0.01141 (18) | |
| C2 | 0.0000 | 0.0000 | 0.66711 (15) | 0.01275 (18) | |
| C3 | 0.01175 (6) | 0.06389 (4) | 0.77384 (11) | 0.01521 (15) | |
| H3A | 0.0129 | 0.0658 | 0.9211 | 0.018* | |
| C4 | 0.02138 (6) | 0.12274 (4) | 0.65545 (14) | 0.01597 (16) | |
| H4A | 0.0289 | 0.1653 | 0.7218 | 0.019* | |
| C5 | 0.01984 (5) | 0.11846 (4) | 0.42997 (11) | 0.01352 (15) | |
| C6 | 0.02718 (6) | 0.18360 (4) | 0.30155 (15) | 0.01878 (15) | |
| H6A | 0.0381 | 0.1721 | 0.1554 | 0.028* | |
| H6B | 0.0819 | 0.2110 | 0.3525 | 0.028* | |
| H6C | −0.0338 | 0.2094 | 0.3147 | 0.028* |
| N1 | 0.0165 (3) | 0.0124 (3) | 0.0111 (3) | −0.00003 (19) | −0.00022 (18) | 0.00128 (16) |
| C1 | 0.0132 (4) | 0.0123 (4) | 0.0087 (4) | 0.0005 (3) | 0.000 | 0.000 |
| C2 | 0.0148 (4) | 0.0138 (4) | 0.0096 (4) | −0.0002 (3) | 0.000 | 0.000 |
| C3 | 0.0189 (3) | 0.0159 (3) | 0.0108 (3) | −0.0010 (2) | 0.00012 (19) | −0.0019 (2) |
| C4 | 0.0196 (4) | 0.0138 (3) | 0.0144 (3) | −0.0006 (2) | 0.0004 (2) | −0.0025 (2) |
| C5 | 0.0150 (3) | 0.0124 (3) | 0.0131 (3) | 0.0001 (2) | −0.0002 (2) | 0.0010 (2) |
| C6 | 0.0229 (3) | 0.0137 (3) | 0.0197 (3) | −0.0013 (2) | −0.0009 (3) | 0.0038 (2) |
| N1—C5 | 1.3238 (8) | C3—H3A | 0.9300 |
| N1—C1 | 1.3662 (7) | C4—C5 | 1.4251 (11) |
| C1—N1i | 1.3662 (7) | C4—H4A | 0.9300 |
| C1—C2 | 1.4184 (13) | C5—C6 | 1.5017 (10) |
| C2—C3i | 1.4165 (9) | C6—H6A | 0.9600 |
| C2—C3 | 1.4165 (9) | C6—H6B | 0.9600 |
| C3—C4 | 1.3678 (10) | C6—H6C | 0.9600 |
| C5—N1—C1 | 118.23 (6) | C3—C4—H4A | 120.2 |
| N1i—C1—N1 | 115.46 (7) | C5—C4—H4A | 120.2 |
| N1i—C1—C2 | 122.27 (4) | N1—C5—C4 | 122.90 (7) |
| N1—C1—C2 | 122.27 (4) | N1—C5—C6 | 117.83 (6) |
| C3i—C2—C3 | 123.23 (9) | C4—C5—C6 | 119.26 (7) |
| C3i—C2—C1 | 118.39 (4) | C5—C6—H6A | 109.5 |
| C3—C2—C1 | 118.38 (4) | C5—C6—H6B | 109.5 |
| C4—C3—C2 | 118.51 (7) | H6A—C6—H6B | 109.5 |
| C4—C3—H3A | 120.7 | C5—C6—H6C | 109.5 |
| C2—C3—H3A | 120.7 | H6A—C6—H6C | 109.5 |
| C3—C4—C5 | 119.69 (7) | H6B—C6—H6C | 109.5 |
| C5—N1—C1—N1i | 179.65 (7) | C1—C2—C3—C4 | 0.76 (8) |
| C5—N1—C1—C2 | −0.35 (7) | C2—C3—C4—C5 | −0.28 (11) |
| N1i—C1—C2—C3i | −0.46 (5) | C1—N1—C5—C4 | 0.88 (11) |
| N1—C1—C2—C3i | 179.54 (5) | C1—N1—C5—C6 | −177.77 (5) |
| N1i—C1—C2—C3 | 179.54 (5) | C3—C4—C5—N1 | −0.57 (13) |
| N1—C1—C2—C3 | −0.46 (5) | C3—C4—C5—C6 | 178.06 (6) |
| C3i—C2—C3—C4 | −179.25 (8) |
| H··· | ||||
| C3—H3A···N1ii | 0.93 | 2.56 | 3.4889 (9) | 175 |
| C6—H6C···Cg1iii | 0.96 | 2.78 | 3.5742 (8) | 140 |
| C6—H6C···Cg2iv | 0.96 | 2.78 | 3.5742 (8) | 140 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3 | 0.93 | 2.56 | 3.4889 (9) | 175 |
| C6—H6 | 0.96 | 2.78 | 3.5742 (8) | 140 |
| C6—H6 | 0.96 | 2.78 | 3.5742 (8) | 140 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 and Cg2 are the centroids of the N1/C1–C5 and C1–C2/C3A–C5A/N1A rings, respectively.