Literature DB >> 21583458

2,7-Dimethyl-1,8-naphthyridine.

Hoong-Kun Fun, Chin Sing Yeap, Nirmal Kumar Das, Ajit Kumar Mahapatra, Shyamaprosad Goswami.   

Abstract

The asymmetric unit of the title compound, C(10)H(10)N(2), contains one half-mol-ecule with the two shared C atoms lying on a twofold rotation axis. The 1,8-naphthyridine is almost planar with a dihedral angle of 0.42 (3)° between the fused pyridine rings. In the crystal, mol-ecules are linked into infinite chains along the c axis by inter-molecular C-H⋯N hydrogen bonds, generating R(2) (2)(8) ring motifs. In addition, the crystal structure is further stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583458      PMCID: PMC2977386          DOI: 10.1107/S1600536809024350

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of naphthyridines, see: Badawneh et al. (2001 ▶); Hawes et al. (1977 ▶); Gorecki & Hawes (1977 ▶). For mol­ecular recognition chemistry of naphthyridines, see: Goswami & Mukherjee (1997 ▶); Goswami et al. (2001 ▶, 2005 ▶). For the preparation of 2,7-dimethyl-[1,8]naphthyridine, see: Chandler et al. (1982 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H10N2 M = 158.20 Orthorhombic, a = 13.3977 (2) Å b = 19.3492 (4) Å c = 6.3089 (1) Å V = 1635.49 (5) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.57 × 0.41 × 0.24 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.939, T max = 0.981 15454 measured reflections 1153 independent reflections 1116 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.098 S = 1.09 1153 reflections 57 parameters 1 restraint H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809024350/bq2147sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024350/bq2147Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N2F(000) = 672
Mr = 158.20Dx = 1.285 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 9922 reflections
a = 13.3977 (2) Åθ = 3.0–40.6°
b = 19.3492 (4) ŵ = 0.08 mm1
c = 6.3089 (1) ÅT = 100 K
V = 1635.49 (5) Å3Block, colourless
Z = 80.57 × 0.41 × 0.24 mm
Bruker SMART APEXII CCD area-detector diffractometer1153 independent reflections
Radiation source: fine-focus sealed tube1116 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 37.5°, θmin = 3.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −21→22
Tmin = 0.939, Tmax = 0.981k = −32→31
15454 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0689P)2 + 0.3523P] where P = (Fo2 + 2Fc2)/3
1153 reflections(Δ/σ)max < 0.001
57 parametersΔρmax = 0.51 e Å3
1 restraintΔρmin = −0.25 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.01020 (4)0.05928 (3)0.32666 (9)0.01333 (14)
C10.00000.00000.44228 (13)0.01141 (18)
C20.00000.00000.66711 (15)0.01275 (18)
C30.01175 (6)0.06389 (4)0.77384 (11)0.01521 (15)
H3A0.01290.06580.92110.018*
C40.02138 (6)0.12274 (4)0.65545 (14)0.01597 (16)
H4A0.02890.16530.72180.019*
C50.01984 (5)0.11846 (4)0.42997 (11)0.01352 (15)
C60.02718 (6)0.18360 (4)0.30155 (15)0.01878 (15)
H6A0.03810.17210.15540.028*
H6B0.08190.21100.35250.028*
H6C−0.03380.20940.31470.028*
U11U22U33U12U13U23
N10.0165 (3)0.0124 (3)0.0111 (3)−0.00003 (19)−0.00022 (18)0.00128 (16)
C10.0132 (4)0.0123 (4)0.0087 (4)0.0005 (3)0.0000.000
C20.0148 (4)0.0138 (4)0.0096 (4)−0.0002 (3)0.0000.000
C30.0189 (3)0.0159 (3)0.0108 (3)−0.0010 (2)0.00012 (19)−0.0019 (2)
C40.0196 (4)0.0138 (3)0.0144 (3)−0.0006 (2)0.0004 (2)−0.0025 (2)
C50.0150 (3)0.0124 (3)0.0131 (3)0.0001 (2)−0.0002 (2)0.0010 (2)
C60.0229 (3)0.0137 (3)0.0197 (3)−0.0013 (2)−0.0009 (3)0.0038 (2)
N1—C51.3238 (8)C3—H3A0.9300
N1—C11.3662 (7)C4—C51.4251 (11)
C1—N1i1.3662 (7)C4—H4A0.9300
C1—C21.4184 (13)C5—C61.5017 (10)
C2—C3i1.4165 (9)C6—H6A0.9600
C2—C31.4165 (9)C6—H6B0.9600
C3—C41.3678 (10)C6—H6C0.9600
C5—N1—C1118.23 (6)C3—C4—H4A120.2
N1i—C1—N1115.46 (7)C5—C4—H4A120.2
N1i—C1—C2122.27 (4)N1—C5—C4122.90 (7)
N1—C1—C2122.27 (4)N1—C5—C6117.83 (6)
C3i—C2—C3123.23 (9)C4—C5—C6119.26 (7)
C3i—C2—C1118.39 (4)C5—C6—H6A109.5
C3—C2—C1118.38 (4)C5—C6—H6B109.5
C4—C3—C2118.51 (7)H6A—C6—H6B109.5
C4—C3—H3A120.7C5—C6—H6C109.5
C2—C3—H3A120.7H6A—C6—H6C109.5
C3—C4—C5119.69 (7)H6B—C6—H6C109.5
C5—N1—C1—N1i179.65 (7)C1—C2—C3—C40.76 (8)
C5—N1—C1—C2−0.35 (7)C2—C3—C4—C5−0.28 (11)
N1i—C1—C2—C3i−0.46 (5)C1—N1—C5—C40.88 (11)
N1—C1—C2—C3i179.54 (5)C1—N1—C5—C6−177.77 (5)
N1i—C1—C2—C3179.54 (5)C3—C4—C5—N1−0.57 (13)
N1—C1—C2—C3−0.46 (5)C3—C4—C5—C6178.06 (6)
C3i—C2—C3—C4−179.25 (8)
D—H···AD—HH···AD···AD—H···A
C3—H3A···N1ii0.932.563.4889 (9)175
C6—H6C···Cg1iii0.962.783.5742 (8)140
C6—H6C···Cg2iv0.962.783.5742 (8)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯N1i0.932.563.4889 (9)175
C6—H6CCg1ii0.962.783.5742 (8)140
C6—H6CCg2iii0.962.783.5742 (8)140

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 and Cg2 are the centroids of the N1/C1–C5 and C1–C2/C3A–C5A/N1A rings, respectively.

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and evaluation of antihypertensive activity of 1,8-naphthyridine derivatives. Part X.

Authors:  M Badawneh; P L Ferrarini; V Calderone; C Manera; E Martinotti; C Mori; G Saccomanni; L Testai
Journal:  Eur J Med Chem       Date:  2001 Nov-Dec       Impact factor: 6.514

3.  2,3-Disubstituted 1,8-naphthyridines as potential diuretic agents. 2. 5,7-Dimethyl derivatives.

Authors:  E M Hawes; D K Gorecki; R G Gedir
Journal:  J Med Chem       Date:  1977-06       Impact factor: 7.446

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

5.  Simple and efficient synthesis of 2,7-difunctionalized-1,8-naphthyridines.

Authors:  Shyamaprosad Goswami; Reshmi Mukherjee; Rakhi Mukherjee; Subrata Jana; Annada C Maity; Avijit Kumar Adak
Journal:  Molecules       Date:  2005-08-31       Impact factor: 4.411

  5 in total
  2 in total

1.  2,7-Bis-(trichloro-meth-yl)-1,8-naphthyridine.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; Annada C Maity; Shyamaprosad Goswami
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

2.  7-(2-Chloro-phen-yl)-2,6,9-trimethyl-dibenzo[b,h][1,6]naphthyridine.

Authors:  K N Vennila; K Prabha; M Manoj; K J Rajendra Prasad; D Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28
  2 in total

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