Literature DB >> 21580379

2-Amino-5-methyl-pyridinium 4-nitro-benzoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title compound, C(6)n class="Species">H(9)N(2) (+)·C(7)H(4)NO(4) (-), the nitro group of the 4-nitro-benzoate anion is twisted by 6.2 (2)° from the attached ring. In the crystal structure, the cations and anions are linked via strong N-H⋯O and weak C-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2010        PMID: 21580379      PMCID: PMC2983711          DOI: 10.1107/S1600536810005301

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶); Hemamalini & Fun (2010 ▶). For details of n class="Chemical">hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2n class="Chemical">C7H4NO4 − M = 275.26 Monoclinic, a = 13.684 (12) Å b = 4.025 (4) Å c = 12.706 (11) Å β = 114.94 (2)° V = 634.5 (10) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.36 × 0.18 × 0.08 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.961, T max = 0.991 7053 measured reflections 1854 independent reflections 1283 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.116 S = 1.06 1854 reflections 222 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAIn class="Chemical">NT program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810005301/sj2727sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005301/sj2727Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4NO4F(000) = 288
Mr = 275.26Dx = 1.441 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 1854 reflections
a = 13.684 (12) Åθ = 3.2–28.2°
b = 4.025 (4) ŵ = 0.11 mm1
c = 12.706 (11) ÅT = 100 K
β = 114.94 (2)°Block, colourless
V = 634.5 (10) Å30.36 × 0.18 × 0.08 mm
Z = 2
Bruker APEX DUO CCD area-detector diffractometer1854 independent reflections
Radiation source: fine-focus sealed tube1283 reflections with I > 2σ(I)
graphiteRint = 0.042
φ and ω scansθmax = 30.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→19
Tmin = 0.961, Tmax = 0.991k = −5→5
7053 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0604P)2] where P = (Fo2 + 2Fc2)/3
1854 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.19 e Å3
2 restraintsΔρmin = −0.20 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) k.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.83203 (19)0.0861 (6)0.16111 (18)0.0407 (6)
N20.7398 (2)0.0221 (8)−0.0369 (2)0.0498 (7)
C10.8230 (2)0.1476 (7)0.0532 (2)0.0399 (7)
C20.9053 (3)0.3372 (8)0.0431 (3)0.0489 (8)
C30.9897 (3)0.4449 (9)0.1392 (3)0.0508 (8)
C40.9979 (3)0.3777 (7)0.2514 (3)0.0459 (7)
C50.9169 (2)0.1971 (8)0.2569 (3)0.0429 (7)
C61.0921 (3)0.4935 (10)0.3582 (3)0.0653 (9)
H6A1.07810.45400.42510.098*
H6B1.10300.72690.35190.098*
H6C1.15550.37390.36620.098*
O10.1957 (2)−0.0891 (11)0.1134 (2)0.0995 (12)
O20.2751 (3)−0.0198 (10)0.2954 (3)0.0953 (11)
O30.61995 (19)0.6210 (7)0.04604 (18)0.0613 (7)
O40.70099 (15)0.7415 (6)0.23282 (17)0.0504 (5)
N30.2718 (2)0.0063 (7)0.1991 (2)0.0548 (7)
C70.5306 (2)0.4378 (8)0.2704 (2)0.0401 (6)
C80.4456 (2)0.2895 (8)0.2828 (2)0.0428 (6)
C90.3641 (2)0.1565 (7)0.1870 (2)0.0400 (6)
C100.3648 (3)0.1575 (8)0.0790 (3)0.0470 (7)
C110.4522 (2)0.3019 (8)0.0683 (2)0.0443 (7)
C120.5345 (2)0.4473 (7)0.1622 (2)0.0339 (5)
C130.6260 (2)0.6165 (7)0.1462 (2)0.0401 (7)
H2A0.896 (2)0.396 (9)−0.035 (3)0.048 (8)*
H3A1.042 (3)0.577 (9)0.131 (3)0.059 (10)*
H5A0.915 (3)0.145 (9)0.328 (3)0.055 (9)*
H7A0.585 (2)0.545 (7)0.333 (2)0.034 (7)*
H9A0.442 (3)0.273 (8)0.355 (4)0.061 (10)*
H10A0.308 (3)0.083 (10)0.017 (3)0.065 (11)*
H11A0.459 (3)0.323 (10)−0.006 (4)0.070 (11)*
H1N10.775 (4)−0.035 (9)0.171 (3)0.059 (10)*
H1N20.728 (3)0.097 (9)−0.107 (3)0.052 (9)*
H2N20.691 (3)−0.087 (9)−0.019 (3)0.055 (10)*
U11U22U33U12U13U23
N10.0419 (14)0.0442 (13)0.0410 (12)0.0003 (11)0.0224 (11)0.0046 (11)
N20.0518 (16)0.0608 (17)0.0392 (13)0.0021 (13)0.0217 (12)0.0057 (12)
C10.0431 (16)0.0395 (16)0.0406 (14)0.0106 (12)0.0211 (13)0.0076 (12)
C20.061 (2)0.0446 (17)0.0533 (17)0.0047 (14)0.0356 (16)0.0118 (14)
C30.0485 (19)0.0460 (18)0.064 (2)−0.0025 (15)0.0299 (16)0.0072 (15)
C40.0455 (17)0.0389 (15)0.0514 (16)0.0041 (13)0.0186 (14)0.0031 (14)
C50.0444 (16)0.0457 (16)0.0393 (15)0.0034 (13)0.0183 (13)0.0043 (13)
C60.052 (2)0.064 (2)0.066 (2)−0.0083 (17)0.0123 (16)0.0025 (17)
O10.069 (2)0.162 (3)0.0674 (18)−0.061 (2)0.0293 (16)−0.0244 (19)
O20.090 (2)0.152 (3)0.0620 (17)−0.046 (2)0.0490 (17)−0.0059 (18)
O30.0633 (15)0.0915 (18)0.0378 (11)−0.0184 (13)0.0299 (11)−0.0033 (12)
O40.0455 (12)0.0696 (14)0.0406 (11)−0.0138 (11)0.0224 (9)−0.0070 (10)
N30.0509 (16)0.0659 (18)0.0539 (16)−0.0126 (14)0.0283 (13)−0.0038 (14)
C70.0454 (16)0.0462 (16)0.0284 (12)−0.0042 (13)0.0151 (12)−0.0026 (11)
C80.0498 (17)0.0510 (18)0.0330 (13)−0.0057 (14)0.0227 (12)−0.0005 (12)
C90.0410 (16)0.0405 (16)0.0424 (15)0.0001 (11)0.0216 (13)0.0031 (12)
C100.0476 (18)0.0576 (19)0.0325 (14)−0.0095 (15)0.0135 (13)−0.0051 (13)
C110.0524 (18)0.0542 (19)0.0305 (13)−0.0037 (14)0.0216 (13)−0.0002 (12)
C120.0377 (14)0.0360 (14)0.0297 (11)0.0035 (10)0.0160 (10)0.0013 (10)
C130.0445 (17)0.0470 (16)0.0330 (14)−0.0004 (13)0.0203 (12)0.0017 (11)
N1—C11.347 (3)O1—N31.208 (4)
N1—C51.355 (4)O2—N31.210 (4)
N1—H1N10.97 (4)O3—C131.241 (3)
N2—C11.328 (4)O4—C131.251 (3)
N2—H1N20.89 (4)N3—C91.466 (4)
N2—H2N20.90 (4)C7—C81.374 (4)
C1—C21.410 (4)C7—C121.399 (4)
C2—C31.350 (5)C7—H7A0.94 (3)
C2—H2A0.97 (3)C8—C91.366 (4)
C3—C41.408 (5)C8—H9A0.94 (4)
C3—H3A0.94 (4)C9—C101.375 (4)
C4—C51.352 (5)C10—C111.387 (5)
C4—C61.499 (5)C10—H10A0.89 (4)
C5—H5A0.93 (4)C11—C121.379 (4)
C6—H6A0.9600C11—H11A0.98 (4)
C6—H6B0.9600C12—C131.512 (4)
C6—H6C0.9600
C1—N1—C5122.0 (3)H6B—C6—H6C109.5
C1—N1—H1N1119 (2)O1—N3—O2122.2 (3)
C5—N1—H1N1119 (2)O1—N3—C9119.3 (3)
C1—N2—H1N2117 (2)O2—N3—C9118.4 (3)
C1—N2—H2N2115 (2)C8—C7—C12120.6 (3)
H1N2—N2—H2N2125 (3)C8—C7—H7A121.1 (18)
N2—C1—N1119.0 (3)C12—C7—H7A118.2 (18)
N2—C1—C2123.7 (3)C9—C8—C7118.7 (3)
N1—C1—C2117.2 (3)C9—C8—H9A118 (2)
C3—C2—C1120.2 (3)C7—C8—H9A123 (2)
C3—C2—H2A122.6 (19)C8—C9—C10122.8 (3)
C1—C2—H2A117.1 (19)C8—C9—N3118.9 (2)
C2—C3—C4121.7 (3)C10—C9—N3118.3 (3)
C2—C3—H3A119 (2)C9—C10—C11117.9 (3)
C4—C3—H3A119 (2)C9—C10—H10A120 (2)
C5—C4—C3116.0 (3)C11—C10—H10A122 (2)
C5—C4—C6122.1 (3)C12—C11—C10121.1 (3)
C3—C4—C6121.8 (3)C12—C11—H11A115 (2)
C4—C5—N1122.8 (3)C10—C11—H11A124 (2)
C4—C5—H5A122 (2)C11—C12—C7118.9 (3)
N1—C5—H5A116 (2)C11—C12—C13119.7 (2)
C4—C6—H6A109.5C7—C12—C13121.4 (2)
C4—C6—H6B109.5O3—C13—O4124.8 (3)
H6A—C6—H6B109.5O3—C13—C12116.3 (2)
C4—C6—H6C109.5O4—C13—C12118.8 (2)
H6A—C6—H6C109.5
C5—N1—C1—N2177.7 (3)O2—N3—C9—C8−6.1 (5)
C5—N1—C1—C2−0.7 (4)O1—N3—C9—C10−5.5 (5)
N2—C1—C2—C3−177.3 (3)O2—N3—C9—C10173.9 (3)
N1—C1—C2—C31.1 (4)C8—C9—C10—C11−0.3 (5)
C1—C2—C3—C4−1.0 (5)N3—C9—C10—C11179.6 (3)
C2—C3—C4—C50.6 (5)C9—C10—C11—C12−1.6 (5)
C2—C3—C4—C6179.3 (3)C10—C11—C12—C72.1 (4)
C3—C4—C5—N1−0.2 (5)C10—C11—C12—C13−177.2 (3)
C6—C4—C5—N1−178.9 (3)C8—C7—C12—C11−0.8 (4)
C1—N1—C5—C40.3 (4)C8—C7—C12—C13178.5 (3)
C12—C7—C8—C9−1.1 (4)C11—C12—C13—O31.7 (4)
C7—C8—C9—C101.6 (5)C7—C12—C13—O3−177.6 (3)
C7—C8—C9—N3−178.3 (3)C11—C12—C13—O4−178.7 (3)
O1—N3—C9—C8174.4 (4)C7—C12—C13—O42.1 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O3i0.97 (5)2.47 (4)3.238 (5)136 (3)
N1—H1N1···O4i0.97 (5)1.77 (5)2.711 (4)163 (3)
N2—H1N2···O4ii0.89 (4)2.02 (4)2.905 (4)179 (5)
N2—H2N2···O3i0.91 (4)1.92 (4)2.804 (5)165 (4)
C3—H3A···O1iii0.93 (4)2.58 (4)3.514 (6)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O3i0.97 (5)2.47 (4)3.238 (5)136 (3)
N1—H1N1⋯O4i0.97 (5)1.77 (5)2.711 (4)163 (3)
N2—H1N2⋯O4ii0.89 (4)2.02 (4)2.905 (4)179 (5)
N2—H2N2⋯O3i0.91 (4)1.92 (4)2.804 (5)165 (4)
C3—H3A⋯O1iii0.93 (4)2.58 (4)3.514 (6)176 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Amino-4-methyl-pyridinium 4-nitro-benzoate.

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  4 in total

1.  2-Amino-5-methyl-pyridinium 4-hydroxy-benzoate.

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

2.  2-Amino-5-methyl-pyridinium 2-carb-oxy-acetate.

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

3.  Bis-(2-amino-5-methyl-pyridinium) fumarate-fumaric acid (1/1).

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24

4.  2-Amino-5-methyl-pyridinium 4-carb-oxy-butano-ate.

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.