Literature DB >> 21588388

Bis-(2-amino-5-methyl-pyridinium) fumarate-fumaric acid (1/1).

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the crystal structure of the title compound, C(6)H(9)N(2) (+)·0.5C(4)H(2)O(4) (2-)·0.5C(4)H(6)O(4), the fumarate dianion and fumaric acid mol-ecule are located on inversion centres. The 2-amino-5-methyl-pyrimidinium cation inter-acts with the carboxyl-ate group of the fumarate anion through a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. These motifs are centrosymmetrically paired via N-H⋯O hydrogen bonds, forming a complementary DDAA array. The carboxyl groups of the fumaric acid mol-ecules and the carboxyl-ate groups of the fumarate anions are hydrogen bonded through O-H⋯O hydrogen bonds, leading to a supra-molecular chain along [101]. The crystal structure is further stabilized by weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588388      PMCID: PMC3007292          DOI: 10.1107/S1600536810027960

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of fumaric acid, see: Batchelor et al. (2000 ▶). For related structures, see: Hemamalini & Fun (2010 ▶); Nahringbauer & Kvick (1977 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For DDAA arrays, see: Robert et al. (2001 ▶); Umadevi et al. (2002 ▶); Thanigaimani et al. (2007 ▶). For carbox­yl–carboxyl­ate inter­actions, see: Büyükgüngör & Odabaşoğlu (2002 ▶); Büyükgüngör et al. (2004 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2 +·0.5C4H4O4 2−·0.5C4H2O4 M = 224.22 Triclinic, a = 4.0366 (4) Å b = 9.3145 (10) Å c = 14.0077 (14) Å α = 94.030 (3)° β = 95.060 (3)° γ = 90.903 (3)° V = 523.20 (9) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.61 × 0.22 × 0.20 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.935, T max = 0.978 19772 measured reflections 5445 independent reflections 4852 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.110 S = 1.05 5445 reflections 147 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810027960/is2576sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027960/is2576Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·0.5C4H4O42·0.5C4H2O4Z = 2
Mr = 224.22F(000) = 236
Triclinic, P1Dx = 1.423 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.0366 (4) ÅCell parameters from 9900 reflections
b = 9.3145 (10) Åθ = 2.7–37.6°
c = 14.0077 (14) ŵ = 0.11 mm1
α = 94.030 (3)°T = 100 K
β = 95.060 (3)°Block, colourless
γ = 90.903 (3)°0.61 × 0.22 × 0.20 mm
V = 523.20 (9) Å3
Bruker APEXII DUO CCD area-detector diffractometer5445 independent reflections
Radiation source: fine-focus sealed tube4852 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 37.7°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→6
Tmin = 0.935, Tmax = 0.978k = −15→15
19772 measured reflectionsl = −24→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0626P)2 + 0.0878P] where P = (Fo2 + 2Fc2)/3
5445 reflections(Δ/σ)max = 0.001
147 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.34 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.64925 (12)0.45378 (5)0.20997 (3)0.01315 (8)
H10.57640.37000.18700.016*
N20.31601 (12)0.55122 (5)0.09009 (3)0.01504 (9)
H2A0.24040.46620.07120.018*
H2B0.24510.62410.06050.018*
C10.54215 (13)0.56996 (5)0.16485 (4)0.01190 (8)
C20.67623 (13)0.70674 (5)0.20110 (4)0.01341 (9)
H20.61470.78900.17060.016*
C30.89669 (13)0.71642 (6)0.28125 (4)0.01392 (9)
H30.98450.80620.30480.017*
C40.99507 (13)0.59304 (6)0.32951 (4)0.01383 (9)
C50.86767 (13)0.46307 (6)0.29027 (4)0.01433 (9)
H50.93110.37950.31890.017*
C61.21690 (15)0.60555 (7)0.42149 (4)0.01903 (10)
H6A1.10010.65170.47160.029*
H6B1.41230.66170.41310.029*
H6C1.28030.51120.43880.029*
O10.27081 (16)0.19332 (6)0.39352 (4)0.02686 (12)
O20.49662 (14)0.03168 (5)0.29314 (3)0.02170 (10)
H2C0.42570.08490.25220.033*
C70.42204 (15)0.08387 (6)0.37847 (4)0.01544 (9)
C80.54504 (15)−0.00956 (6)0.45556 (4)0.01586 (9)
H80.6889−0.08330.44100.019*
O30.10076 (14)0.26911 (5)0.02053 (3)0.02176 (10)
O40.34405 (13)0.19338 (5)0.15605 (3)0.02015 (10)
C90.17514 (14)0.17185 (6)0.07482 (4)0.01450 (9)
C100.06922 (15)0.01973 (6)0.04396 (4)0.01504 (9)
H100.1014−0.05010.08800.018*
U11U22U33U12U13U23
N10.01540 (17)0.00928 (16)0.01454 (17)0.00050 (13)−0.00023 (13)0.00127 (13)
N20.01861 (19)0.01217 (18)0.01362 (17)0.00003 (14)−0.00253 (14)0.00090 (14)
C10.01360 (18)0.01021 (18)0.01198 (18)0.00080 (14)0.00146 (14)0.00086 (14)
C20.0165 (2)0.00966 (18)0.01402 (19)0.00031 (15)0.00102 (15)0.00067 (14)
C30.01491 (19)0.01202 (19)0.01459 (19)−0.00112 (15)0.00159 (15)−0.00077 (15)
C40.01274 (18)0.0149 (2)0.01376 (19)0.00020 (15)0.00090 (14)0.00098 (15)
C50.01445 (19)0.0131 (2)0.0155 (2)0.00149 (15)−0.00004 (15)0.00273 (15)
C60.0157 (2)0.0245 (3)0.0163 (2)−0.00173 (18)−0.00234 (16)0.00247 (19)
O10.0431 (3)0.0210 (2)0.01696 (19)0.0171 (2)0.00033 (18)0.00395 (16)
O20.0396 (3)0.01464 (18)0.01119 (16)0.00699 (17)0.00121 (16)0.00307 (13)
C70.0220 (2)0.01199 (19)0.01201 (18)0.00230 (16)−0.00174 (16)0.00234 (15)
C80.0221 (2)0.0134 (2)0.01226 (19)0.00444 (17)−0.00012 (16)0.00316 (15)
O30.0348 (2)0.01109 (17)0.01746 (18)−0.00270 (15)−0.01071 (16)0.00485 (14)
O40.0338 (2)0.01254 (17)0.01229 (16)−0.00547 (15)−0.00885 (15)0.00302 (13)
C90.0213 (2)0.01004 (18)0.01138 (18)−0.00190 (15)−0.00325 (15)0.00168 (14)
C100.0219 (2)0.01007 (18)0.01231 (19)−0.00229 (16)−0.00368 (15)0.00215 (14)
N1—C11.3492 (7)C6—H6A0.9600
N1—C51.3635 (7)C6—H6B0.9600
N1—H10.8600C6—H6C0.9600
N2—C11.3271 (7)O1—C71.2118 (7)
N2—H2A0.8600O2—C71.3199 (7)
N2—H2B0.8600O2—H2C0.8200
C1—C21.4188 (8)C7—C81.4903 (7)
C2—C31.3665 (7)C8—C8i1.3285 (11)
C2—H20.9300C8—H80.9300
C3—C41.4184 (8)O3—C91.2468 (7)
C3—H30.9300O4—C91.2754 (6)
C4—C51.3671 (8)C9—C101.4965 (8)
C4—C61.4992 (8)C10—C10ii1.3314 (10)
C5—H50.9300C10—H100.9300
C1—N1—C5123.03 (5)C4—C5—H5119.4
C1—N1—H1118.5C4—C6—H6A109.5
C5—N1—H1118.5C4—C6—H6B109.5
C1—N2—H2A120.0H6A—C6—H6B109.5
C1—N2—H2B120.0C4—C6—H6C109.5
H2A—N2—H2B120.0H6A—C6—H6C109.5
N2—C1—N1118.82 (5)H6B—C6—H6C109.5
N2—C1—C2123.44 (5)C7—O2—H2C109.5
N1—C1—C2117.73 (5)O1—C7—O2125.02 (5)
C3—C2—C1119.37 (5)O1—C7—C8123.42 (5)
C3—C2—H2120.3O2—C7—C8111.56 (5)
C1—C2—H2120.3C8i—C8—C7121.87 (6)
C2—C3—C4121.69 (5)C8i—C8—H8119.1
C2—C3—H3119.2C7—C8—H8119.1
C4—C3—H3119.2O3—C9—O4123.73 (5)
C5—C4—C3116.88 (5)O3—C9—C10119.39 (5)
C5—C4—C6121.66 (5)O4—C9—C10116.87 (4)
C3—C4—C6121.41 (5)C10ii—C10—C9122.67 (6)
N1—C5—C4121.22 (5)C10ii—C10—H10118.7
N1—C5—H5119.4C9—C10—H10118.7
C5—N1—C1—N2−176.50 (5)C1—N1—C5—C4−0.74 (8)
C5—N1—C1—C22.78 (8)C3—C4—C5—N1−1.74 (8)
N2—C1—C2—C3176.95 (5)C6—C4—C5—N1175.74 (5)
N1—C1—C2—C3−2.29 (8)O1—C7—C8—C8i10.08 (12)
C1—C2—C3—C4−0.13 (8)O2—C7—C8—C8i−169.47 (8)
C2—C3—C4—C52.14 (8)O3—C9—C10—C10ii7.89 (11)
C2—C3—C4—C6−175.35 (5)O4—C9—C10—C10ii−170.95 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1···O40.861.892.7305 (7)167
N2—H2A···O30.861.982.8334 (7)175
N2—H2B···O3iii0.862.042.8329 (7)154
O2—H2C···O40.821.752.5618 (7)170
C5—H5···O1iv0.932.463.3582 (9)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O40.861.892.7305 (7)167
N2—H2A⋯O30.861.982.8334 (7)175
N2—H2B⋯O3i0.862.042.8329 (7)154
O2—H2C⋯O40.821.752.5618 (7)170
C5—H5⋯O1ii0.932.463.3582 (9)162

Symmetry codes: (i) ; (ii) .

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