Literature DB >> 21580338

(3R*,5'S*)-6,7-Dimeth-oxy-3-(4'-meth-oxy-6'-methyl-5',6',7',8'-tetra-hydro-1,3-dioxolo[4,5-g]isoquinolin-5'-yl)isobenzofuran-1(3H)-one (racemic α-noscapine).

Jan von Langermann, Heike Lorenz, Oliver Boehm, Anke Flemming, Arne Bernsdorf, Martin Köckerling, Dieter Schinzer, Andreas Seidel-Morgenstern.   

Abstract

In the racemic title compound, C(22)H(23)NO(7), the dihedral angle between the fused ring systems is 51.87 (6)°. Two of the meth-oxy groups are disordered over two orientations in 0.688 (5):0.312 (5) and 0.672 (15):0.328 (15) ratios. In the crystal, weak C-H⋯O inter-actions link the mol-ecules.

Entities:  

Year:  2010        PMID: 21580338      PMCID: PMC2983739          DOI: 10.1107/S1600536810003958

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­tussive properties of S,R-noscapine [(−)-narcotin], a main alkaloid of the opium poppy, see: Bergmann & Stolzer (1956 ▶). For the biological activity of noscapine and related compounds, see: Aneja et al. (2006 ▶, 2007 ▶); Mahmoudian et al. (2009 ▶); Dahlstrom et al. (1982 ▶); Anderson et al. (2005 ▶). For the crystal structure of the naturally occurring chiral mol­ecule, see: Seetharaman et al. (1995 ▶).

Experimental

Crystal data

C22H23NO7 M = 413.41 Monoclinic, a = 15.5242 (8) Å b = 9.3581 (5) Å c = 13.2801 (7) Å β = 95.781 (2)° V = 1919.48 (17) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 173 K 0.59 × 0.36 × 0.11 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.939, T max = 0.988 14003 measured reflections 3864 independent reflections 2989 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.169 S = 1.12 3864 reflections 310 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.71 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810003958/hb5290sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003958/hb5290Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H23NO7F(000) = 872
Mr = 413.41Dx = 1.431 Mg m3
Monoclinic, P21/cMelting point: 501.9 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 15.5242 (8) ÅCell parameters from 6930 reflections
b = 9.3581 (5) Åθ = 2.5–29.9°
c = 13.2801 (7) ŵ = 0.11 mm1
β = 95.781 (2)°T = 173 K
V = 1919.48 (17) Å3Block, colourless
Z = 40.59 × 0.36 × 0.11 mm
Bruker SMART CCD diffractometer3864 independent reflections
Radiation source: fine-focus sealed tube2989 reflections with I > 2σ(I)
graphiteRint = 0.018
ω scansθmax = 26.3°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −18→19
Tmin = 0.939, Tmax = 0.988k = −11→8
14003 measured reflectionsl = −15→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.169w = 1/[σ2(Fo2) + (0.0785P)2 + 1.390P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.001
3864 reflectionsΔρmax = 0.56 e Å3
310 parametersΔρmin = −0.71 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0057 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.73446 (12)0.3640 (2)0.27455 (14)0.0344 (5)
O11.04337 (10)0.66824 (18)0.09956 (12)0.0386 (4)
O20.95148 (11)0.68699 (18)−0.04776 (12)0.0404 (4)
O30.98826 (10)0.53115 (19)0.28872 (11)0.0374 (4)
O40.79757 (10)0.49937 (17)0.46248 (11)0.0342 (4)
O50.69655 (18)0.5011 (2)0.56862 (18)0.0843 (9)
C11.03115 (17)0.7361 (3)0.00278 (19)0.0428 (6)
H1A1.02960.84120.01110.051*
H1B1.07960.7120−0.03730.051*
C20.90820 (15)0.6242 (2)0.02642 (16)0.0324 (5)
C30.96312 (14)0.6128 (2)0.11444 (17)0.0305 (5)
C40.93703 (14)0.5473 (2)0.19924 (16)0.0287 (5)
C50.85049 (13)0.4988 (2)0.19361 (15)0.0284 (5)
C60.81858 (13)0.4371 (2)0.28879 (16)0.0293 (5)
H6A0.86270.36690.31830.035*
C70.70645 (16)0.3236 (3)0.16978 (19)0.0412 (6)
H7A0.64750.28240.16600.049*
H7B0.74590.24960.14730.049*
C80.70633 (15)0.4513 (3)0.10059 (18)0.0412 (6)
H8A0.68580.42250.03050.049*
H8B0.66640.52510.12240.049*
C90.79610 (14)0.5116 (2)0.10352 (16)0.0323 (5)
C100.82522 (14)0.5736 (2)0.01770 (16)0.0343 (5)
H10A0.78890.5805−0.04410.041*
C11A1.07435 (17)0.4888 (4)0.2848 (2)0.0634 (9)
H11A1.10340.48240.35370.095*
H11B1.10420.55920.24610.095*
H11C1.07570.39530.25180.095*
C130.81365 (13)0.5602 (2)0.36560 (15)0.0279 (5)
H13A0.86990.61320.37300.033*
C140.72208 (18)0.5464 (3)0.4926 (2)0.0451 (6)
C150.68646 (15)0.6537 (2)0.41869 (19)0.0379 (6)
C160.61460 (19)0.7398 (3)0.4222 (3)0.0668 (10)
C170.59567 (16)0.8363 (3)0.3418 (2)0.0511 (7)
C180.64984 (15)0.8462 (2)0.26480 (17)0.0358 (5)
H18A0.63670.91230.21110.043*
C190.72308 (15)0.7602 (2)0.26562 (16)0.0348 (5)
H19A0.76040.76820.21340.042*
C200.74082 (13)0.6636 (2)0.34276 (15)0.0266 (5)
C120.73227 (19)0.2382 (3)0.3401 (2)0.0483 (7)
H12A0.67540.19240.32860.073*
H12B0.74280.26770.41100.073*
H12C0.77720.17050.32440.073*
O6A0.57726 (16)0.7471 (3)0.51826 (17)0.0462 (9)0.688 (5)
C22A0.4909 (3)0.7090 (9)0.5089 (4)0.0661 (17)0.688 (5)
H22A0.47310.68600.57580.099*0.688 (5)
H22B0.48220.62520.46470.099*0.688 (5)
H22C0.45590.78860.47950.099*0.688 (5)
O6B0.5332 (3)0.6839 (5)0.4441 (4)0.0319 (17)0.312 (5)
C22B0.5107 (6)0.7879 (10)0.5178 (7)0.033 (2)0.312 (5)
H22D0.44820.80540.50880.050*0.312 (5)
H22E0.54170.87740.50830.050*0.312 (5)
H22F0.52710.75130.58620.050*0.312 (5)
C21A0.4969 (5)1.0087 (11)0.2733 (6)0.0490 (17)0.672 (15)
H21A0.45011.07160.29030.074*0.672 (15)
H21B0.47490.94300.21930.074*0.672 (15)
H21C0.54391.06640.25040.074*0.672 (15)
O7A0.5288 (3)0.9287 (5)0.3606 (5)0.0431 (15)0.672 (15)
C21B0.4989 (11)1.0049 (18)0.2305 (13)0.050 (4)0.328 (15)
H21D0.43681.01830.21080.075*0.328 (15)
H21E0.52780.97930.17080.075*0.328 (15)
H21F0.52371.09370.25970.075*0.328 (15)
O7B0.5109 (4)0.8924 (8)0.3042 (11)0.039 (3)0.328 (15)
U11U22U33U12U13U23
N10.0349 (10)0.0345 (10)0.0347 (10)−0.0060 (8)0.0082 (8)−0.0070 (8)
O10.0367 (9)0.0398 (9)0.0405 (9)−0.0031 (7)0.0103 (7)0.0054 (7)
O20.0446 (10)0.0406 (9)0.0373 (9)0.0050 (7)0.0108 (7)0.0095 (7)
O30.0266 (8)0.0546 (10)0.0311 (8)0.0044 (7)0.0038 (6)−0.0008 (7)
O40.0374 (9)0.0410 (9)0.0244 (8)0.0063 (7)0.0044 (6)−0.0009 (7)
O50.124 (2)0.0637 (14)0.0779 (15)0.0484 (14)0.0743 (15)0.0347 (12)
C10.0502 (14)0.0356 (13)0.0443 (14)0.0007 (11)0.0134 (11)0.0089 (11)
C20.0410 (12)0.0273 (11)0.0304 (11)0.0100 (9)0.0103 (9)0.0017 (9)
C30.0299 (11)0.0259 (10)0.0369 (12)0.0035 (8)0.0092 (9)−0.0031 (9)
C40.0296 (11)0.0293 (11)0.0279 (10)0.0043 (8)0.0054 (8)−0.0046 (8)
C50.0284 (11)0.0284 (10)0.0293 (11)0.0052 (8)0.0067 (8)−0.0053 (9)
C60.0267 (10)0.0311 (11)0.0309 (11)0.0031 (8)0.0064 (8)−0.0033 (9)
C70.0352 (13)0.0444 (14)0.0444 (14)−0.0069 (10)0.0058 (10)−0.0143 (11)
C80.0288 (12)0.0584 (16)0.0362 (13)0.0021 (11)0.0018 (9)−0.0088 (11)
C90.0305 (11)0.0356 (12)0.0315 (11)0.0082 (9)0.0065 (9)−0.0059 (9)
C100.0337 (12)0.0395 (13)0.0299 (11)0.0127 (10)0.0037 (9)−0.0016 (9)
C11A0.0348 (14)0.113 (3)0.0433 (15)0.0206 (16)0.0076 (11)0.0161 (17)
C130.0259 (10)0.0338 (11)0.0244 (10)−0.0008 (8)0.0046 (8)−0.0020 (8)
C140.0556 (16)0.0397 (13)0.0443 (14)0.0146 (12)0.0262 (12)0.0046 (11)
C150.0360 (12)0.0314 (12)0.0492 (14)0.0029 (9)0.0182 (10)0.0049 (10)
C160.0508 (17)0.0533 (17)0.105 (3)0.0212 (14)0.0502 (17)0.0351 (17)
C170.0291 (12)0.0369 (13)0.090 (2)0.0080 (10)0.0183 (13)0.0169 (14)
C180.0405 (13)0.0312 (11)0.0342 (12)0.0024 (10)−0.0038 (10)−0.0041 (9)
C190.0423 (13)0.0368 (12)0.0265 (11)0.0052 (10)0.0091 (9)−0.0039 (9)
C200.0249 (10)0.0290 (11)0.0258 (10)−0.0035 (8)0.0020 (8)−0.0081 (8)
C120.0565 (16)0.0399 (14)0.0502 (15)−0.0148 (12)0.0127 (12)−0.0041 (11)
O6A0.0358 (16)0.076 (2)0.0288 (14)0.0116 (13)0.0118 (10)0.0064 (12)
C22A0.040 (3)0.114 (5)0.046 (3)−0.010 (3)0.013 (2)0.017 (3)
O6B0.027 (3)0.031 (3)0.042 (3)−0.0057 (19)0.019 (2)−0.004 (2)
C22B0.027 (5)0.038 (5)0.035 (4)0.003 (3)0.007 (3)−0.002 (4)
C21A0.037 (2)0.059 (3)0.053 (4)0.012 (2)0.014 (3)0.028 (4)
O7A0.0393 (17)0.055 (2)0.037 (3)0.0203 (15)0.0117 (17)0.014 (2)
C21B0.041 (5)0.040 (5)0.072 (10)0.017 (4)0.017 (7)0.033 (8)
O7B0.031 (3)0.041 (4)0.044 (7)0.008 (2)0.004 (3)0.009 (3)
N1—C71.465 (3)C13—H13A1.0000
N1—C121.466 (3)C14—C151.472 (4)
N1—C61.469 (3)C15—C161.381 (3)
O1—C31.382 (3)C15—C201.382 (3)
O1—C11.429 (3)C16—C171.406 (4)
O2—C21.379 (3)C16—O6B1.425 (5)
O2—C11.423 (3)C16—O6A1.455 (4)
O3—C41.370 (3)C17—C181.391 (4)
O3—C11A1.400 (3)C17—O7A1.392 (4)
O4—C141.350 (3)C17—O7B1.457 (7)
O4—C131.451 (2)C18—C191.392 (3)
O5—C141.199 (3)C18—H18A0.9500
C1—H1A0.9900C19—C201.373 (3)
C1—H1B0.9900C19—H19A0.9500
C2—C101.366 (3)C12—H12A0.9800
C2—C31.380 (3)C12—H12B0.9800
C3—C41.378 (3)C12—H12C0.9800
C4—C51.413 (3)O6A—C22A1.382 (6)
C5—C91.398 (3)C22A—H22A0.9800
C5—C61.517 (3)C22A—H22B0.9800
C6—C131.546 (3)C22A—H22C0.9800
C6—H6A1.0000O6B—C22B1.447 (10)
C7—C81.508 (4)C22B—H22D0.9800
C7—H7A0.9900C22B—H22E0.9800
C7—H7B0.9900C22B—H22F0.9800
C8—C91.500 (3)C21A—O7A1.426 (7)
C8—H8A0.9900C21A—H21A0.9800
C8—H8B0.9900C21A—H21B0.9800
C9—C101.394 (3)C21A—H21C0.9800
C10—H10A0.9500C21B—O7B1.436 (14)
C11A—H11A0.9800C21B—H21D0.9800
C11A—H11B0.9800C21B—H21E0.9800
C11A—H11C0.9800C21B—H21F0.9800
C13—C201.496 (3)
C7—N1—C12109.51 (19)C6—C13—H13A109.5
C7—N1—C6114.66 (17)O5—C14—O4120.3 (2)
C12—N1—C6111.77 (19)O5—C14—C15132.0 (2)
C3—O1—C1104.81 (18)O4—C14—C15107.71 (19)
C2—O2—C1105.30 (18)C16—C15—C20122.7 (2)
C4—O3—C11A118.17 (18)C16—C15—C14128.8 (2)
C14—O4—C13111.50 (17)C20—C15—C14108.4 (2)
O2—C1—O1108.11 (18)C15—C16—C17117.2 (2)
O2—C1—H1A110.1C15—C16—O6B121.9 (3)
O1—C1—H1A110.1C17—C16—O6B105.6 (3)
O2—C1—H1B110.1C15—C16—O6A116.8 (3)
O1—C1—H1B110.1C17—C16—O6A124.3 (2)
H1A—C1—H1B108.4C18—C17—O7A127.4 (3)
C10—C2—O2127.6 (2)C18—C17—C16120.3 (2)
C10—C2—C3122.8 (2)O7A—C17—C16111.4 (3)
O2—C2—C3109.5 (2)C18—C17—O7B108.4 (5)
C4—C3—C2121.3 (2)C16—C17—O7B127.2 (4)
C4—C3—O1128.8 (2)C17—C18—C19120.6 (2)
C2—C3—O1109.82 (19)C17—C18—H18A119.7
O3—C4—C3124.4 (2)C19—C18—H18A119.7
O3—C4—C5118.44 (19)C20—C19—C18119.3 (2)
C3—C4—C5117.1 (2)C20—C19—H19A120.4
C9—C5—C4120.45 (19)C18—C19—H19A120.4
C9—C5—C6121.71 (19)C19—C20—C15119.8 (2)
C4—C5—C6117.82 (19)C19—C20—C13131.89 (18)
N1—C6—C5115.49 (18)C15—C20—C13108.27 (19)
N1—C6—C13109.24 (16)N1—C12—H12A109.5
C5—C6—C13107.95 (17)N1—C12—H12B109.5
N1—C6—H6A108.0H12A—C12—H12B109.5
C5—C6—H6A108.0N1—C12—H12C109.5
C13—C6—H6A108.0H12A—C12—H12C109.5
N1—C7—C8110.9 (2)H12B—C12—H12C109.5
N1—C7—H7A109.5C22A—O6A—C16112.2 (3)
C8—C7—H7A109.5O6A—C22A—H22A109.5
N1—C7—H7B109.5O6A—C22A—H22B109.5
C8—C7—H7B109.5H22A—C22A—H22B109.5
H7A—C7—H7B108.1O6A—C22A—H22C109.5
C9—C8—C7109.8 (2)H22A—C22A—H22C109.5
C9—C8—H8A109.7H22B—C22A—H22C109.5
C7—C8—H8A109.7C16—O6B—C22B99.8 (5)
C9—C8—H8B109.7O6B—C22B—H22D109.5
C7—C8—H8B109.7O6B—C22B—H22E109.5
H8A—C8—H8B108.2H22D—C22B—H22E109.5
C10—C9—C5121.2 (2)O6B—C22B—H22F109.5
C10—C9—C8120.8 (2)H22D—C22B—H22F109.5
C5—C9—C8118.0 (2)H22E—C22B—H22F109.5
C2—C10—C9117.1 (2)O7A—C21A—H21A109.5
C2—C10—H10A121.5O7A—C21A—H21B109.5
C9—C10—H10A121.5H21A—C21A—H21B109.5
O3—C11A—H11A109.5O7A—C21A—H21C109.5
O3—C11A—H11B109.5H21A—C21A—H21C109.5
H11A—C11A—H11B109.5H21B—C21A—H21C109.5
O3—C11A—H11C109.5C17—O7A—C21A112.6 (4)
H11A—C11A—H11C109.5O7B—C21B—H21D109.5
H11B—C11A—H11C109.5O7B—C21B—H21E109.5
O4—C13—C20103.85 (15)H21D—C21B—H21E109.5
O4—C13—C6108.49 (17)O7B—C21B—H21F109.5
C20—C13—C6115.78 (17)H21D—C21B—H21F109.5
O4—C13—H13A109.5H21E—C21B—H21F109.5
C20—C13—H13A109.5C21B—O7B—C17123.3 (8)
D—H···AD—HH···AD···AD—H···A
C6—H6A···O1i1.002.543.533 (3)172
C13—H13A···O2ii1.002.443.317 (3)146
C18—H18A···O5iii0.952.343.120 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6A⋯O1i1.002.543.533 (3)172
C13—H13A⋯O2ii1.002.443.317 (3)146
C18—H18A⋯O5iii0.952.343.120 (3)140

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  [Clinical experiences with narcotine treatment of cough].

Authors:  M BERGMANN; H STOLZER
Journal:  Wien Med Wochenschr       Date:  1956-03-03

2.  Identification of novel and improved antimitotic agents derived from noscapine.

Authors:  James T Anderson; Anthony E Ting; Sherry Boozer; Kurt R Brunden; Chris Crumrine; Joel Danzig; Tom Dent; Laurel Faga; John J Harrington; William F Hodnick; Steven M Murphy; Gary Pawlowski; Robert Perry; Amy Raber; Stephen E Rundlett; Alain Stricker-Krongrad; Jianmin Wang; Youssef L Bennani
Journal:  J Med Chem       Date:  2005-11-17       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis and biological evaluation of a cyclic ether fluorinated noscapine analog.

Authors:  Ritu Aneja; Surya N Vangapandu; Harish C Joshi
Journal:  Bioorg Med Chem       Date:  2006-09-27       Impact factor: 3.641

Review 5.  The anti-cancer activity of noscapine: a review.

Authors:  Massoud Mahmoudian; Parvaneh Rahimi-Moghaddam
Journal:  Recent Pat Anticancer Drug Discov       Date:  2009-01       Impact factor: 4.169

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7.  Pharmacokinetic properties of noscapine.

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Journal:  Eur J Clin Pharmacol       Date:  1982       Impact factor: 2.953

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1.  Novel 9'-substituted-noscapines: synthesis with Suzuki cross-coupling, structure elucidation and biological evaluation.

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