Literature DB >> 21579950

Poly[diaqua-bis(μ-4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O:O)calcium(II)].

Wen-Dong Song1, Jian-Bin Yan, Shi-Jie Li, Dong-Liang Miao, Xiao-Fei Li.   

Abstract

In the title complex, [Ca(C(8)H(9)N(2)O(4))(2)(H(2)O)(2)](n), the n class="Chemical">Ca(II) atom is eight-coordinated in a distorted square-anti-prismatic environment. The water-coordinated Ca atom is N,O-chelated by the monocarboxyl-ate anion; the carboxyl -CO(2) portion engaged in chelation bears an acid hydrogen. The free -CO(2) portion engages in bonding to adjacent Ca atoms. The Ca(II) centres are connected through the ligand, forming a layer structure; the layers are linked by hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21579950      PMCID: PMC2980060          DOI: 10.1107/S1600536809052799

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential uses and diverse structrual types of structures containing metals and n class="Disease">N-heterocyclic carboxylic acids, see: Liang et al. (2002 ▶); Net et al. (1989 ▶); Nie et al. (2007 ▶).

Experimental

Crystal data

[Ca(C8H9N2O4)2(H2O)2] M = 470.46 Monoclinic, a = 12.703 (3) Å b = 13.006 (3) Å c = 11.697 (2) Å β = 97.864 (2)° V = 1914.3 (7) Å3 Z = 4 Mo Kα radiation μ = 0.40 mm−1 T = 273 K 0.32 × 0.24 × 0.20 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.884, T max = 0.925 4830 measured reflections 1718 independent reflections 1504 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.099 S = 1.02 1718 reflections 144 parameters 3 restraints H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809052799/ng2702sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052799/ng2702Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ca(C8H9N2O4)2(H2O)2]F(000) = 984
Mr = 470.46Dx = 1.632 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3600 reflections
a = 12.703 (3) Åθ = 1.4–28°
b = 13.006 (3) ŵ = 0.40 mm1
c = 11.697 (2) ÅT = 273 K
β = 97.864 (2)°Block, white
V = 1914.3 (7) Å30.32 × 0.24 × 0.20 mm
Z = 4
Bruker APEXII area-detector diffractometer1718 independent reflections
Radiation source: fine-focus sealed tube1504 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scanθmax = 25.2°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −13→15
Tmin = 0.884, Tmax = 0.925k = −14→15
4830 measured reflectionsl = −14→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0551P)2 + 1.470P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
1718 reflectionsΔρmax = 0.29 e Å3
144 parametersΔρmin = −0.23 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0076 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ca10.50000.07420 (4)0.25000.0189 (2)
O10.33875 (11)0.05035 (10)0.36313 (12)0.0262 (3)
O1W0.55495 (11)0.10622 (11)0.45862 (12)0.0319 (4)
H1W0.51210.13470.49700.048*
H2W0.57690.05190.49040.048*
O20.20033 (11)0.11430 (10)0.43530 (13)0.0296 (4)
H10.16630.16800.43160.044*
O30.09452 (11)0.27478 (11)0.42169 (12)0.0308 (4)
O40.09469 (12)0.42512 (10)0.33195 (13)0.0352 (4)
N10.36595 (12)0.22589 (11)0.23987 (13)0.0201 (4)
N20.26433 (12)0.36382 (11)0.21921 (13)0.0225 (4)
H20.24030.42290.19510.027*
C10.28670 (14)0.21777 (14)0.30920 (15)0.0192 (4)
C20.22299 (14)0.30376 (14)0.29747 (16)0.0209 (4)
C30.34950 (14)0.31557 (14)0.18572 (16)0.0215 (4)
C40.27622 (14)0.12212 (14)0.37333 (16)0.0204 (4)
C50.40949 (15)0.36092 (15)0.09774 (17)0.0255 (4)
H5A0.47530.32310.09740.031*
H5B0.42770.43150.11890.031*
C60.34718 (17)0.35929 (17)−0.02384 (18)0.0334 (5)
H6A0.33990.2888−0.05080.040*
H6B0.27640.3865−0.02120.040*
C70.40144 (19)0.42208 (18)−0.1082 (2)0.0382 (6)
H7A0.40670.4924−0.08320.057*
H7B0.36060.4184−0.18350.057*
H7C0.47140.3952−0.11130.057*
C80.13058 (15)0.33836 (15)0.35251 (16)0.0240 (4)
U11U22U33U12U13U23
Ca10.0189 (3)0.0157 (3)0.0229 (3)0.0000.0052 (2)0.000
O10.0267 (7)0.0187 (7)0.0336 (8)0.0026 (6)0.0051 (6)0.0014 (6)
O1W0.0345 (8)0.0327 (8)0.0299 (8)0.0035 (6)0.0095 (6)0.0011 (6)
O20.0303 (8)0.0228 (7)0.0384 (8)0.0041 (6)0.0140 (7)0.0073 (6)
O30.0295 (8)0.0300 (8)0.0360 (8)0.0045 (6)0.0155 (6)0.0036 (6)
O40.0385 (9)0.0295 (8)0.0394 (9)0.0182 (6)0.0119 (7)0.0052 (6)
N10.0188 (8)0.0190 (8)0.0231 (8)0.0000 (6)0.0049 (6)0.0001 (6)
N20.0250 (8)0.0157 (8)0.0275 (9)0.0045 (6)0.0059 (7)0.0042 (6)
C10.0185 (9)0.0192 (9)0.0198 (9)−0.0003 (7)0.0023 (7)−0.0013 (7)
C20.0219 (9)0.0200 (9)0.0212 (9)0.0015 (7)0.0046 (8)−0.0011 (7)
C30.0207 (9)0.0201 (9)0.0236 (10)−0.0007 (7)0.0027 (8)−0.0004 (7)
C40.0203 (9)0.0191 (9)0.0215 (10)−0.0007 (7)0.0020 (7)−0.0016 (7)
C50.0230 (10)0.0255 (10)0.0288 (11)−0.0018 (8)0.0062 (8)0.0047 (8)
C60.0311 (11)0.0350 (12)0.0332 (12)−0.0093 (9)0.0012 (9)0.0059 (9)
C70.0419 (13)0.0429 (13)0.0294 (12)−0.0077 (10)0.0037 (10)0.0069 (9)
C80.0235 (10)0.0266 (10)0.0219 (10)0.0022 (8)0.0035 (8)−0.0017 (8)
Ca1—O4i2.4104 (14)N1—C11.380 (2)
Ca1—O4ii2.4104 (14)N2—C31.354 (2)
Ca1—O1W2.4798 (15)N2—C21.362 (2)
Ca1—O1Wiii2.4799 (15)N2—H20.8600
Ca1—N1iii2.5982 (15)C1—C21.376 (3)
Ca1—N12.5982 (15)C1—C41.468 (3)
Ca1—O12.6048 (14)C2—C81.484 (3)
Ca1—O1iii2.6049 (14)C3—C51.484 (3)
O1—C41.242 (2)C5—C61.530 (3)
O1W—H1W0.8378C5—H5A0.9700
O1W—H2W0.8287C5—H5B0.9700
O2—C41.287 (2)C6—C71.517 (3)
O2—H10.8200C6—H6A0.9700
O3—C81.284 (2)C6—H6B0.9700
O4—C81.228 (2)C7—H7A0.9600
O4—Ca1iv2.4102 (14)C7—H7B0.9600
N1—C31.330 (2)C7—H7C0.9600
O4i—Ca1—O4ii72.89 (8)C3—N2—C2108.98 (15)
O4i—Ca1—O1W125.76 (5)C3—N2—H2125.5
O4ii—Ca1—O1W71.69 (5)C2—N2—H2125.5
O4i—Ca1—O1Wiii71.69 (5)C2—C1—N1110.21 (16)
O4ii—Ca1—O1Wiii125.76 (5)C2—C1—C4130.27 (17)
O1W—Ca1—O1Wiii160.66 (7)N1—C1—C4119.30 (15)
O4i—Ca1—N1iii156.52 (5)N2—C2—C1104.93 (16)
O4ii—Ca1—N1iii107.72 (5)N2—C2—C8121.21 (16)
O1W—Ca1—N1iii74.52 (5)C1—C2—C8133.83 (17)
O1Wiii—Ca1—N1iii90.68 (5)N1—C3—N2110.39 (16)
O4i—Ca1—N1107.72 (5)N1—C3—C5128.07 (17)
O4ii—Ca1—N1156.53 (5)N2—C3—C5121.51 (17)
O1W—Ca1—N190.68 (5)O1—C4—O2122.20 (17)
O1Wiii—Ca1—N174.52 (5)O1—C4—C1118.94 (16)
N1iii—Ca1—N181.19 (7)O2—C4—C1118.82 (16)
O4i—Ca1—O173.86 (5)C3—C5—C6112.93 (16)
O4ii—Ca1—O194.96 (5)C3—C5—H5A109.0
O1W—Ca1—O169.83 (5)C6—C5—H5A109.0
O1Wiii—Ca1—O1112.64 (5)C3—C5—H5B109.0
N1iii—Ca1—O1128.56 (5)C6—C5—H5B109.0
N1—Ca1—O163.74 (4)H5A—C5—H5B107.8
O4i—Ca1—O1iii94.96 (5)C7—C6—C5111.95 (17)
O4ii—Ca1—O1iii73.85 (5)C7—C6—H6A109.2
O1W—Ca1—O1iii112.64 (5)C5—C6—H6A109.2
O1Wiii—Ca1—O1iii69.82 (5)C7—C6—H6B109.2
N1iii—Ca1—O1iii63.74 (4)C5—C6—H6B109.2
N1—Ca1—O1iii128.56 (5)H6A—C6—H6B107.9
O1—Ca1—O1iii166.32 (6)C6—C7—H7A109.5
C4—O1—Ca1121.13 (12)C6—C7—H7B109.5
Ca1—O1W—H1W119.1H7A—C7—H7B109.5
Ca1—O1W—H2W109.3C6—C7—H7C109.5
H1W—O1W—H2W109.8H7A—C7—H7C109.5
C4—O2—H1109.5H7B—C7—H7C109.5
C8—O4—Ca1iv165.57 (15)O4—C8—O3124.05 (18)
C3—N1—C1105.49 (14)O4—C8—C2119.22 (17)
C3—N1—Ca1138.32 (12)O3—C8—C2116.72 (17)
C1—N1—Ca1116.18 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1v0.862.012.859 (2)171
O1W—H2W···O1vi0.832.313.088 (2)156
O1W—H1W···O3vii0.842.122.947 (2)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.862.012.859 (2)171
O1W—H2W⋯O1ii0.832.313.088 (2)156
O1W—H1W⋯O3iii0.842.122.947 (2)172

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  11 in total

1.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)cobalt(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Dong-Liang Miao; Wen-Dong Song; Shao-Wei Tong; Jing-Bo An
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

2.  Diaqua-bis(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II) N,N-dimethyl-formamide disolvate.

Authors:  Jian-Bin Yan; Shi-Jie Li; Wen-Dong Song; Hao Wang; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

3.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)zinc(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Wen-Dong Song; Shi-Hong Li; Jing-Jing Dong; Jian-Bin Yan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

4.  Diaqua-bis(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)magnesium(II) 3.5-hydrate.

Authors:  Xiang-Yun Liu; Li-Hua Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-17

5.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)cadmium(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Jing-Jing Dong; Wen-Dong Song; Jian-Bin Yan; Shi-Hong Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

6.  Diaqua-bis(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)nickel(II) N,N-dimethyl-formamide disolvate.

Authors:  Shi-Jie Li; Jian-Bin Yan; Wen-Dong Song; Hao Wang; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

7.  Diaqua-bis-(4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O)cobalt(II) N,N-dimethyl-formamide disolvate.

Authors:  Shi-Jie Li; Li-Li Ji; Wen-Dong Song; Shi-Wei Hu; Pei-Wen Qin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

8.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Dong-Liang Miao; Wen-Dong Song; Shi-Hong Li; Jian-Bin Yan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

9.  2-Ethyl-1H-imidazole-4-carboxyl-ate monohydrate.

Authors:  Shi-Jie Li; Juan-Hua Liu; Wen-Dong Song; Xiao-Fei Li; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

10.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)cadmium N,N-dimethyl-formamide disolvate.

Authors:  Shao-Wei Tong; Shi-Jie Li; Wen-Dong Song; Dong-Liang Miao; Jing-Bo An
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30
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