Literature DB >> 21588865

Diaqua-bis-(4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O)cobalt(II) N,N-dimethyl-formamide disolvate.

Shi-Jie Li, Li-Li Ji, Wen-Dong Song, Shi-Wei Hu, Pei-Wen Qin.   

Abstract

In the title complex, [Co(C(8)H(9)N(2)O(4))(2)(H(2)O)(2)]·2C(3)H(7)NO, the Co(II) cation (site symmetry ) is six-coordinated by two 5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ate ligands and two water mol-ecules in a distorted octa-hedral environment. In the crystal structure, the complex mol-ecules and dimethyl-formamide solvent mol-ecules are linked by extensive O-H⋯O and N-H⋯O hydrogen bonding into sheets lying parallel to (21).

Entities:  

Year:  2010        PMID: 21588865      PMCID: PMC3009030          DOI: 10.1107/S1600536810042054

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our past work based on the 2-propyl-1H-imidazole-4,5-carboxyl­ate (H3pimda) ligand, see: Yan et al. (2010 ▶); Li et al. (2010a ▶,b ▶,c ▶,d ▶); Song et al. (2010 ▶); He et al. (2010 ▶); Fan et al. (2010 ▶). For Co complexes of a similar ligand, see: Lu et al. (2008 ▶); Wang et al. (2004 ▶).

Experimental

Crystal data

[Co(C8H9N2O4)2(H2O)2]·2C3H7NO M = 635.50 Triclinic, a = 7.3325 (7) Å b = 9.330 (1) Å c = 11.2255 (12) Å α = 76.930 (1)° β = 87.564 (2)° γ = 68.857 (1)° V = 697.06 (12) Å3 Z = 1 Mo Kα radiation μ = 0.69 mm−1 T = 298 K 0.28 × 0.16 × 0.12 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.831, T max = 0.922 3602 measured reflections 2393 independent reflections 1785 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.120 S = 1.06 2393 reflections 191 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.52 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810042054/jh2216sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810042054/jh2216Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C8H9N2O4)2(H2O)2]·2C3H7NOZ = 1
Mr = 635.50F(000) = 333
Triclinic, P1Dx = 1.514 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3325 (7) ÅCell parameters from 1702 reflections
b = 9.330 (1) Åθ = 2.5–25.9°
c = 11.2255 (12) ŵ = 0.69 mm1
α = 76.930 (1)°T = 298 K
β = 87.564 (2)°Cubic, purple
γ = 68.857 (1)°0.28 × 0.16 × 0.12 mm
V = 697.06 (12) Å3
Bruker SMART 1000 CCD area-detector diffractometer2393 independent reflections
Radiation source: fine-focus sealed tube1785 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −8→8
Tmin = 0.831, Tmax = 0.922k = −11→10
3602 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0593P)2 + 0.0702P] where P = (Fo2 + 2Fc2)/3
2393 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.52 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.50000.50000.0276 (2)
N10.6372 (4)0.2538 (3)0.5508 (2)0.0262 (6)
N20.8031 (4)−0.0015 (3)0.6076 (2)0.0299 (7)
H20.8735−0.09110.65240.036*
N30.1217 (5)0.4898 (4)0.8633 (3)0.0431 (8)
O10.4446 (3)0.4305 (3)0.3378 (2)0.0342 (6)
O20.4995 (4)0.2241 (3)0.2558 (2)0.0410 (6)
H2A0.56180.12890.27350.061*
O30.6877 (4)−0.0632 (3)0.3176 (2)0.0422 (6)
O40.8630 (4)−0.2427 (3)0.4793 (2)0.0415 (6)
O50.2300 (3)0.4898 (3)0.5643 (2)0.0393 (6)
H5C0.20940.41170.55260.047*
H5D0.13090.56980.54030.047*
O60.0385 (4)0.7471 (3)0.7696 (3)0.0600 (8)
C10.5195 (5)0.2858 (4)0.3436 (3)0.0300 (8)
C20.6307 (5)0.1832 (4)0.4565 (3)0.0257 (7)
C30.7326 (5)0.0238 (4)0.4905 (3)0.0274 (7)
C40.7665 (5)−0.1054 (4)0.4262 (3)0.0325 (8)
C50.7426 (5)0.1391 (4)0.6406 (3)0.0288 (8)
C60.7851 (6)0.1544 (4)0.7649 (3)0.0380 (9)
H6A0.74340.26550.76520.046*
H6B0.92540.10810.78220.046*
C70.6851 (7)0.0760 (5)0.8653 (3)0.0535 (11)
H7A0.7339−0.03640.86880.064*
H7B0.54580.11680.84490.064*
C80.7158 (7)0.1009 (6)0.9906 (3)0.0587 (12)
H8A0.84920.04181.01920.088*
H8B0.63010.06561.04670.088*
H8C0.68760.21100.98530.088*
C90.0104 (6)0.6217 (5)0.7892 (4)0.0482 (10)
H9−0.09670.61960.74900.058*
C100.2965 (6)0.4851 (5)0.9218 (4)0.0659 (13)
H10A0.40920.43330.87960.099*
H10B0.30770.42811.00550.099*
H10C0.28870.59070.91900.099*
C110.0896 (9)0.3443 (6)0.8724 (5)0.0855 (17)
H11A−0.03060.36530.82900.128*
H11B0.08170.29730.95700.128*
H11C0.19620.27330.83750.128*
U11U22U33U12U13U23
Co10.0338 (4)0.0169 (4)0.0301 (4)−0.0063 (3)−0.0011 (3)−0.0059 (3)
N10.0333 (16)0.0169 (15)0.0287 (15)−0.0088 (12)−0.0018 (12)−0.0059 (12)
N20.0349 (17)0.0144 (14)0.0346 (16)−0.0038 (12)−0.0030 (13)−0.0019 (12)
N30.049 (2)0.0271 (18)0.0475 (19)−0.0089 (16)−0.0012 (16)−0.0055 (15)
O10.0437 (15)0.0207 (13)0.0315 (13)−0.0046 (11)−0.0077 (11)−0.0025 (10)
O20.0544 (18)0.0285 (14)0.0357 (14)−0.0071 (13)−0.0098 (12)−0.0098 (12)
O30.0545 (17)0.0317 (15)0.0424 (16)−0.0108 (13)0.0002 (13)−0.0197 (12)
O40.0462 (16)0.0189 (14)0.0572 (17)−0.0063 (12)−0.0018 (13)−0.0125 (12)
O50.0390 (15)0.0270 (14)0.0549 (16)−0.0118 (12)0.0054 (12)−0.0158 (12)
O60.066 (2)0.0279 (16)0.070 (2)−0.0047 (14)−0.0209 (16)0.0049 (14)
C10.033 (2)0.027 (2)0.0322 (19)−0.0115 (16)0.0004 (15)−0.0091 (16)
C20.0293 (18)0.0177 (16)0.0285 (17)−0.0072 (14)0.0001 (14)−0.0043 (14)
C30.0319 (19)0.0228 (18)0.0295 (18)−0.0119 (15)0.0023 (15)−0.0067 (14)
C40.030 (2)0.025 (2)0.045 (2)−0.0092 (16)0.0079 (17)−0.0144 (17)
C50.034 (2)0.0179 (18)0.0322 (19)−0.0084 (15)−0.0024 (15)−0.0016 (15)
C60.046 (2)0.030 (2)0.036 (2)−0.0113 (17)−0.0087 (17)−0.0054 (16)
C70.068 (3)0.061 (3)0.040 (2)−0.029 (2)0.009 (2)−0.019 (2)
C80.065 (3)0.068 (3)0.039 (2)−0.019 (3)0.006 (2)−0.014 (2)
C90.043 (2)0.050 (3)0.048 (2)−0.011 (2)−0.0044 (19)−0.012 (2)
C100.049 (3)0.055 (3)0.071 (3)−0.004 (2)−0.017 (2)0.009 (2)
C110.126 (5)0.045 (3)0.094 (4)−0.043 (3)0.017 (4)−0.016 (3)
Co1—N1i2.098 (3)O6—C91.230 (5)
Co1—N12.098 (3)C1—C21.471 (5)
Co1—O5i2.105 (2)C2—C31.372 (4)
Co1—O52.105 (2)C3—C41.482 (4)
Co1—O1i2.165 (2)C5—C61.491 (4)
Co1—O12.165 (2)C6—C71.513 (5)
N1—C51.319 (4)C6—H6A0.9700
N1—C21.377 (4)C6—H6B0.9700
N2—C51.357 (4)C7—C81.515 (5)
N2—C31.371 (4)C7—H7A0.9700
N2—H20.8600C7—H7B0.9700
N3—C91.320 (5)C8—H8A0.9600
N3—C111.440 (5)C8—H8B0.9600
N3—C101.447 (5)C8—H8C0.9600
O1—C11.248 (4)C9—H90.9300
O2—C11.286 (4)C10—H10A0.9600
O2—H2A0.8200C10—H10B0.9600
O3—C41.286 (4)C10—H10C0.9600
O4—C41.238 (4)C11—H11A0.9600
O5—H5C0.8333C11—H11B0.9600
O5—H5D0.8318C11—H11C0.9600
N1i—Co1—N1180.0O4—C4—C3119.3 (3)
N1i—Co1—O5i92.07 (10)O3—C4—C3115.5 (3)
N1—Co1—O5i87.93 (10)N1—C5—N2110.7 (3)
N1i—Co1—O587.93 (10)N1—C5—C6126.4 (3)
N1—Co1—O592.07 (10)N2—C5—C6122.8 (3)
O5i—Co1—O5180.0C5—C6—C7113.5 (3)
N1i—Co1—O1i78.33 (9)C5—C6—H6A108.9
N1—Co1—O1i101.67 (9)C7—C6—H6A108.9
O5i—Co1—O1i88.69 (9)C5—C6—H6B108.9
O5—Co1—O1i91.31 (9)C7—C6—H6B108.9
N1i—Co1—O1101.67 (9)H6A—C6—H6B107.7
N1—Co1—O178.33 (9)C6—C7—C8113.8 (3)
O5i—Co1—O191.31 (9)C6—C7—H7A108.8
O5—Co1—O188.69 (9)C8—C7—H7A108.8
O1i—Co1—O1180.0C6—C7—H7B108.8
C5—N1—C2105.8 (3)C8—C7—H7B108.8
C5—N1—Co1142.0 (2)H7A—C7—H7B107.7
C2—N1—Co1111.9 (2)C7—C8—H8A109.5
C5—N2—C3108.3 (3)C7—C8—H8B109.5
C5—N2—H2125.8H8A—C8—H8B109.5
C3—N2—H2125.8C7—C8—H8C109.5
C9—N3—C11121.0 (4)H8A—C8—H8C109.5
C9—N3—C10119.5 (3)H8B—C8—H8C109.5
C11—N3—C10118.7 (4)O6—C9—N3124.5 (4)
C1—O1—Co1114.2 (2)O6—C9—H9117.7
C1—O2—H2A109.5N3—C9—H9117.7
Co1—O5—H5C113.1N3—C10—H10A109.5
Co1—O5—H5D116.9N3—C10—H10B109.5
H5C—O5—H5D108.6H10A—C10—H10B109.5
O1—C1—O2122.4 (3)N3—C10—H10C109.5
O1—C1—C2118.2 (3)H10A—C10—H10C109.5
O2—C1—C2119.5 (3)H10B—C10—H10C109.5
C3—C2—N1110.3 (3)N3—C11—H11A109.5
C3—C2—C1132.5 (3)N3—C11—H11B109.5
N1—C2—C1117.2 (3)H11A—C11—H11B109.5
N2—C3—C2104.9 (3)N3—C11—H11C109.5
N2—C3—C4122.9 (3)H11A—C11—H11C109.5
C2—C3—C4132.2 (3)H11B—C11—H11C109.5
O4—C4—O3125.2 (3)
N1i—Co1—N1—C5156 (25)O1—C1—C2—N12.7 (5)
O5i—Co1—N1—C585.2 (4)O2—C1—C2—N1−175.9 (3)
O5—Co1—N1—C5−94.8 (4)C5—N2—C3—C20.4 (3)
O1i—Co1—N1—C5−3.0 (4)C5—N2—C3—C4−178.4 (3)
O1—Co1—N1—C5177.0 (4)N1—C2—C3—N2−0.5 (3)
N1i—Co1—N1—C2−17 (25)C1—C2—C3—N2−179.6 (3)
O5i—Co1—N1—C2−88.1 (2)N1—C2—C3—C4178.1 (3)
O5—Co1—N1—C291.9 (2)C1—C2—C3—C4−1.0 (6)
O1i—Co1—N1—C2−176.3 (2)N2—C3—C4—O4−0.3 (5)
O1—Co1—N1—C23.7 (2)C2—C3—C4—O4−178.6 (3)
N1i—Co1—O1—C1177.5 (2)N2—C3—C4—O3178.7 (3)
N1—Co1—O1—C1−2.5 (2)C2—C3—C4—O30.4 (5)
O5i—Co1—O1—C185.2 (2)C2—N1—C5—N2−0.1 (4)
O5—Co1—O1—C1−94.8 (2)Co1—N1—C5—N2−173.7 (2)
O1i—Co1—O1—C126 (45)C2—N1—C5—C6−177.2 (3)
Co1—O1—C1—O2179.3 (2)Co1—N1—C5—C69.3 (6)
Co1—O1—C1—C20.7 (4)C3—N2—C5—N1−0.2 (4)
C5—N1—C2—C30.4 (4)C3—N2—C5—C6177.1 (3)
Co1—N1—C2—C3176.1 (2)N1—C5—C6—C7110.9 (4)
C5—N1—C2—C1179.6 (3)N2—C5—C6—C7−65.8 (5)
Co1—N1—C2—C1−4.7 (3)C5—C6—C7—C8−175.9 (3)
O1—C1—C2—C3−178.2 (3)C11—N3—C9—O6−174.1 (4)
O2—C1—C2—C33.2 (6)C10—N3—C9—O6−3.8 (6)
D—H···AD—HH···AD···AD—H···A
O5—H5D···O4ii0.832.122.946 (3)174
O5—H5C···O4iii0.831.942.773 (3)175
O2—H2A···O30.821.662.478 (3)177
N2—H2···O6iv0.861.842.685 (4)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5D⋯O4i0.832.122.946 (3)174
O5—H5C⋯O4ii0.831.942.773 (3)175
O2—H2A⋯O30.821.662.478 (3)177
N2—H2⋯O6iii0.861.842.685 (4)166

Symmetry codes: (i) ; (ii) ; (iii) .

  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Diaquabis(5-carboxy-1H-imidazole-4-carboxylato-kappa2N3,O4)cobalt(II) 4,4'-bipyridine solvate.

Authors:  Yu Ling Wang; Rong Cao; Wen Hua Bi
Journal:  Acta Crystallogr C       Date:  2004-11-11       Impact factor: 1.172

3.  Poly[diaqua-bis(μ-4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O:O)calcium(II)].

Authors:  Wen-Dong Song; Jian-Bin Yan; Shi-Jie Li; Dong-Liang Miao; Xiao-Fei Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

4.  Diaqua-bis(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II) N,N-dimethyl-formamide disolvate.

Authors:  Jian-Bin Yan; Shi-Jie Li; Wen-Dong Song; Hao Wang; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

5.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)zinc(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Wen-Dong Song; Shi-Hong Li; Jing-Jing Dong; Jian-Bin Yan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

6.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)cadmium(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Jing-Jing Dong; Wen-Dong Song; Jian-Bin Yan; Shi-Hong Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

7.  Diaqua-bis(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)nickel(II) N,N-dimethyl-formamide disolvate.

Authors:  Shi-Jie Li; Jian-Bin Yan; Wen-Dong Song; Hao Wang; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

8.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)nickel(II) tetra-hydrate.

Authors:  Run-Zhen Fan; Shi-Jie Li; Wen-Dong Song; Dong-Liang Miao; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

9.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Dong-Liang Miao; Wen-Dong Song; Shi-Hong Li; Jian-Bin Yan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

10.  Diaqua-bis-(4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O)copper(II) N,N-dimethyl-formamide disolvate.

Authors:  Lan-Zhen He; Shi-Jie Li; Wen-Dong Song; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07
  10 in total

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