| Literature DB >> 21579888 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
In the title compound, C(5)H(8)N(3) (+)·C(7)H(5)O(2) (-)·C(7)H(6)O(2), the carboxyl and carboxyl-ate groups are twisted away from their attached benzene rings by 10.75 (7) and 20.33 (6)°, respectively. In the crystal structure, the 2,3-diamino-pyridinium cations, benzoate anions and benzoic acid mol-ecules are linked into a two-dimensional network parallel to (001) by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds and π-π inter-actions between the pyridinium rings [centroid-centroid distance = 3.4981 (7) Å].Entities:
Year: 2010 PMID: 21579888 PMCID: PMC2979855 DOI: 10.1107/S1600536810001443
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H8N3+·C7H5O2−·C7H6O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9414 reflections |
| θ = 2.5–30.0° | |
| µ = 0.10 mm−1 | |
| β = 96.345 (1)° | Block, orange |
| 0.38 × 0.18 × 0.13 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 5104 independent reflections |
| Radiation source: fine-focus sealed tube | 3848 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.1°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 36881 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5104 reflections | (Δ/σ)max = 0.001 |
| 259 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) k. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1A | 0.85851 (7) | 0.85383 (8) | 0.03377 (7) | 0.0290 (2) | |
| O2A | 0.95927 (7) | 0.88574 (8) | −0.09759 (6) | 0.02659 (19) | |
| C1A | 0.74939 (10) | 1.07373 (11) | −0.01140 (9) | 0.0281 (3) | |
| H1AA | 0.7494 | 1.0434 | 0.0576 | 0.034* | |
| C2A | 0.68601 (11) | 1.17233 (12) | −0.04363 (11) | 0.0335 (3) | |
| H2AA | 0.6455 | 1.2097 | 0.0045 | 0.040* | |
| C3A | 0.68306 (10) | 1.21522 (12) | −0.14752 (11) | 0.0336 (3) | |
| H3AA | 0.6393 | 1.2801 | −0.1697 | 0.040* | |
| C4A | 0.74514 (11) | 1.16156 (13) | −0.21788 (10) | 0.0348 (3) | |
| H4AA | 0.7426 | 1.1899 | −0.2878 | 0.042* | |
| C5A | 0.81149 (10) | 1.06528 (11) | −0.18501 (9) | 0.0274 (3) | |
| H5AA | 0.8549 | 1.0312 | −0.2322 | 0.033* | |
| C6A | 0.81306 (9) | 1.01987 (10) | −0.08187 (8) | 0.0214 (2) | |
| C7A | 0.88181 (9) | 0.91288 (10) | −0.04745 (8) | 0.0222 (2) | |
| N1 | 1.05200 (8) | 0.68618 (9) | 0.02224 (8) | 0.0237 (2) | |
| N2 | 0.98632 (9) | 0.70123 (10) | 0.18620 (9) | 0.0278 (2) | |
| N3 | 1.10673 (10) | 0.49546 (11) | 0.25569 (9) | 0.0336 (3) | |
| C8 | 1.04742 (9) | 0.64369 (10) | 0.12201 (9) | 0.0221 (2) | |
| C9 | 1.10929 (9) | 0.53927 (10) | 0.15432 (9) | 0.0224 (2) | |
| C10 | 1.16824 (9) | 0.48674 (10) | 0.08034 (9) | 0.0244 (2) | |
| H10A | 1.2080 | 0.4177 | 0.0992 | 0.029* | |
| C11 | 1.16949 (10) | 0.53516 (11) | −0.02261 (9) | 0.0268 (3) | |
| H11A | 1.2101 | 0.4992 | −0.0714 | 0.032* | |
| C12 | 1.11068 (10) | 0.63515 (11) | −0.05016 (9) | 0.0264 (3) | |
| H12A | 1.1106 | 0.6685 | −0.1181 | 0.032* | |
| O1B | 0.69229 (8) | 0.72978 (9) | 0.06840 (7) | 0.0321 (2) | |
| O2B | 0.75274 (7) | 0.77725 (8) | 0.23701 (7) | 0.0310 (2) | |
| C1B | 0.54529 (11) | 0.56665 (13) | 0.13724 (12) | 0.0364 (3) | |
| H1BA | 0.5578 | 0.5637 | 0.0657 | 0.044* | |
| C2B | 0.46748 (12) | 0.49389 (14) | 0.17377 (15) | 0.0485 (4) | |
| H2BA | 0.4281 | 0.4417 | 0.1267 | 0.058* | |
| C3B | 0.44829 (13) | 0.49857 (14) | 0.27941 (15) | 0.0501 (4) | |
| H3BA | 0.3953 | 0.4503 | 0.3033 | 0.060* | |
| C4B | 0.50734 (12) | 0.57449 (14) | 0.34983 (13) | 0.0443 (4) | |
| H4BA | 0.4943 | 0.5771 | 0.4212 | 0.053* | |
| C5B | 0.58609 (11) | 0.64699 (12) | 0.31465 (10) | 0.0315 (3) | |
| H5BA | 0.6264 | 0.6975 | 0.3625 | 0.038* | |
| C6B | 0.60470 (9) | 0.64412 (10) | 0.20783 (9) | 0.0254 (2) | |
| C7B | 0.69011 (9) | 0.72314 (10) | 0.17338 (9) | 0.0235 (2) | |
| H1OB | 0.7482 (18) | 0.7795 (19) | 0.0545 (17) | 0.076 (6)* | |
| H1N1 | 1.0151 (13) | 0.7519 (15) | 0.0012 (13) | 0.038 (4)* | |
| H1N2 | 0.9746 (13) | 0.6707 (15) | 0.2475 (14) | 0.041 (4)* | |
| H2N2 | 0.9452 (13) | 0.7586 (15) | 0.1570 (13) | 0.045 (5)* | |
| H1N3 | 1.0666 (13) | 0.5270 (14) | 0.3014 (13) | 0.040 (4)* | |
| H2N3 | 1.1455 (13) | 0.4331 (15) | 0.2731 (12) | 0.038 (4)* |
| O1A | 0.0312 (5) | 0.0296 (5) | 0.0266 (4) | 0.0009 (4) | 0.0050 (3) | 0.0098 (3) |
| O2A | 0.0266 (4) | 0.0268 (4) | 0.0270 (4) | 0.0029 (3) | 0.0057 (3) | 0.0008 (3) |
| C1A | 0.0294 (6) | 0.0309 (6) | 0.0243 (5) | 0.0016 (5) | 0.0045 (5) | 0.0020 (5) |
| C2A | 0.0297 (7) | 0.0330 (7) | 0.0385 (7) | 0.0051 (5) | 0.0060 (5) | −0.0029 (5) |
| C3A | 0.0282 (7) | 0.0274 (6) | 0.0445 (7) | 0.0048 (5) | 0.0010 (5) | 0.0079 (5) |
| C4A | 0.0352 (7) | 0.0379 (7) | 0.0312 (6) | 0.0045 (6) | 0.0031 (5) | 0.0145 (5) |
| C5A | 0.0282 (6) | 0.0299 (6) | 0.0246 (5) | 0.0014 (5) | 0.0055 (5) | 0.0051 (4) |
| C6A | 0.0208 (5) | 0.0208 (5) | 0.0222 (5) | −0.0029 (4) | 0.0005 (4) | 0.0019 (4) |
| C7A | 0.0241 (6) | 0.0219 (5) | 0.0200 (5) | −0.0019 (4) | 0.0000 (4) | 0.0003 (4) |
| N1 | 0.0254 (5) | 0.0207 (5) | 0.0248 (5) | 0.0020 (4) | 0.0018 (4) | 0.0014 (4) |
| N2 | 0.0301 (6) | 0.0265 (5) | 0.0280 (5) | 0.0078 (4) | 0.0082 (4) | 0.0024 (4) |
| N3 | 0.0418 (7) | 0.0340 (6) | 0.0267 (5) | 0.0160 (5) | 0.0113 (5) | 0.0093 (4) |
| C8 | 0.0212 (5) | 0.0208 (5) | 0.0241 (5) | −0.0012 (4) | 0.0019 (4) | −0.0005 (4) |
| C9 | 0.0221 (6) | 0.0214 (5) | 0.0235 (5) | −0.0005 (4) | 0.0018 (4) | 0.0006 (4) |
| C10 | 0.0239 (6) | 0.0212 (6) | 0.0282 (6) | 0.0029 (4) | 0.0029 (4) | −0.0003 (4) |
| C11 | 0.0285 (6) | 0.0280 (6) | 0.0244 (5) | 0.0016 (5) | 0.0060 (5) | −0.0029 (4) |
| C12 | 0.0302 (6) | 0.0279 (6) | 0.0213 (5) | −0.0013 (5) | 0.0041 (4) | 0.0008 (4) |
| O1B | 0.0342 (5) | 0.0385 (5) | 0.0237 (4) | −0.0063 (4) | 0.0036 (4) | −0.0013 (4) |
| O2B | 0.0313 (5) | 0.0331 (5) | 0.0284 (4) | −0.0075 (4) | 0.0031 (4) | −0.0048 (4) |
| C1B | 0.0311 (7) | 0.0323 (7) | 0.0451 (8) | −0.0034 (6) | 0.0011 (6) | −0.0051 (6) |
| C2B | 0.0355 (8) | 0.0330 (8) | 0.0760 (11) | −0.0094 (6) | 0.0020 (8) | −0.0029 (7) |
| C3B | 0.0364 (8) | 0.0315 (8) | 0.0845 (12) | −0.0028 (6) | 0.0156 (8) | 0.0184 (8) |
| C4B | 0.0431 (9) | 0.0413 (8) | 0.0510 (9) | 0.0068 (7) | 0.0166 (7) | 0.0208 (7) |
| C5B | 0.0324 (7) | 0.0297 (6) | 0.0326 (6) | 0.0034 (5) | 0.0046 (5) | 0.0074 (5) |
| C6B | 0.0230 (6) | 0.0207 (5) | 0.0321 (6) | 0.0033 (5) | 0.0017 (5) | 0.0017 (4) |
| C7B | 0.0238 (6) | 0.0214 (5) | 0.0253 (5) | 0.0031 (4) | 0.0026 (4) | −0.0017 (4) |
| O1A—C7A | 1.2733 (13) | C8—C9 | 1.4283 (16) |
| O2A—C7A | 1.2541 (14) | C9—C10 | 1.3802 (16) |
| C1A—C2A | 1.3866 (18) | C10—C11 | 1.4018 (16) |
| C1A—C6A | 1.3922 (16) | C10—H10A | 0.93 |
| C1A—H1AA | 0.93 | C11—C12 | 1.3559 (17) |
| C2A—C3A | 1.3855 (19) | C11—H11A | 0.93 |
| C2A—H2AA | 0.93 | C12—H12A | 0.93 |
| C3A—C4A | 1.3775 (19) | O1B—C7B | 1.3241 (14) |
| C3A—H3AA | 0.93 | O1B—H1OB | 0.93 (2) |
| C4A—C5A | 1.3891 (18) | O2B—C7B | 1.2166 (14) |
| C4A—H4AA | 0.93 | C1B—C2B | 1.385 (2) |
| C5A—C6A | 1.3880 (15) | C1B—C6B | 1.3913 (18) |
| C5A—H5AA | 0.93 | C1B—H1BA | 0.93 |
| C6A—C7A | 1.5028 (16) | C2B—C3B | 1.376 (2) |
| N1—C8 | 1.3461 (14) | C2B—H2BA | 0.93 |
| N1—C12 | 1.3566 (15) | C3B—C4B | 1.377 (2) |
| N1—H1N1 | 0.888 (17) | C3B—H3BA | 0.93 |
| N2—C8 | 1.3358 (15) | C4B—C5B | 1.3855 (19) |
| N2—H1N2 | 0.869 (17) | C4B—H4BA | 0.93 |
| N2—H2N2 | 0.875 (17) | C5B—C6B | 1.3877 (17) |
| N3—C9 | 1.3665 (15) | C5B—H5BA | 0.93 |
| N3—H1N3 | 0.878 (17) | C6B—C7B | 1.4873 (17) |
| N3—H2N3 | 0.860 (17) | ||
| C2A—C1A—C6A | 120.34 (11) | N3—C9—C8 | 118.97 (11) |
| C2A—C1A—H1AA | 119.8 | C10—C9—C8 | 117.84 (10) |
| C6A—C1A—H1AA | 119.8 | C9—C10—C11 | 121.42 (11) |
| C3A—C2A—C1A | 120.00 (12) | C9—C10—H10A | 119.3 |
| C3A—C2A—H2AA | 120.0 | C11—C10—H10A | 119.3 |
| C1A—C2A—H2AA | 120.0 | C12—C11—C10 | 119.13 (11) |
| C4A—C3A—C2A | 119.88 (12) | C12—C11—H11A | 120.4 |
| C4A—C3A—H3AA | 120.1 | C10—C11—H11A | 120.4 |
| C2A—C3A—H3AA | 120.1 | C11—C12—N1 | 119.45 (11) |
| C3A—C4A—C5A | 120.38 (12) | C11—C12—H12A | 120.3 |
| C3A—C4A—H4AA | 119.8 | N1—C12—H12A | 120.3 |
| C5A—C4A—H4AA | 119.8 | C7B—O1B—H1OB | 108.7 (13) |
| C6A—C5A—C4A | 120.13 (11) | C2B—C1B—C6B | 119.86 (14) |
| C6A—C5A—H5AA | 119.9 | C2B—C1B—H1BA | 120.1 |
| C4A—C5A—H5AA | 119.9 | C6B—C1B—H1BA | 120.1 |
| C5A—C6A—C1A | 119.22 (11) | C3B—C2B—C1B | 120.22 (15) |
| C5A—C6A—C7A | 120.19 (10) | C3B—C2B—H2BA | 119.9 |
| C1A—C6A—C7A | 120.58 (10) | C1B—C2B—H2BA | 119.9 |
| O2A—C7A—O1A | 122.65 (11) | C2B—C3B—C4B | 120.18 (14) |
| O2A—C7A—C6A | 119.96 (10) | C2B—C3B—H3BA | 119.9 |
| O1A—C7A—C6A | 117.38 (10) | C4B—C3B—H3BA | 119.9 |
| C8—N1—C12 | 124.11 (11) | C3B—C4B—C5B | 120.23 (15) |
| C8—N1—H1N1 | 119.3 (10) | C3B—C4B—H4BA | 119.9 |
| C12—N1—H1N1 | 116.6 (10) | C5B—C4B—H4BA | 119.9 |
| C8—N2—H1N2 | 121.0 (11) | C4B—C5B—C6B | 119.88 (13) |
| C8—N2—H2N2 | 116.6 (11) | C4B—C5B—H5BA | 120.1 |
| H1N2—N2—H2N2 | 120.2 (15) | C6B—C5B—H5BA | 120.1 |
| C9—N3—H1N3 | 122.8 (10) | C5B—C6B—C1B | 119.62 (12) |
| C9—N3—H2N3 | 116.8 (10) | C5B—C6B—C7B | 118.18 (11) |
| H1N3—N3—H2N3 | 120.3 (14) | C1B—C6B—C7B | 122.19 (11) |
| N2—C8—N1 | 118.79 (11) | O2B—C7B—O1B | 122.94 (11) |
| N2—C8—C9 | 123.18 (10) | O2B—C7B—C6B | 122.38 (11) |
| N1—C8—C9 | 118.03 (10) | O1B—C7B—C6B | 114.68 (10) |
| N3—C9—C10 | 123.18 (11) | ||
| C6A—C1A—C2A—C3A | 2.2 (2) | N3—C9—C10—C11 | −179.41 (12) |
| C1A—C2A—C3A—C4A | −1.6 (2) | C8—C9—C10—C11 | 1.28 (17) |
| C2A—C3A—C4A—C5A | −0.6 (2) | C9—C10—C11—C12 | −0.60 (18) |
| C3A—C4A—C5A—C6A | 2.1 (2) | C10—C11—C12—N1 | 0.01 (18) |
| C4A—C5A—C6A—C1A | −1.49 (18) | C8—N1—C12—C11 | −0.18 (18) |
| C4A—C5A—C6A—C7A | 177.79 (11) | C6B—C1B—C2B—C3B | 0.4 (2) |
| C2A—C1A—C6A—C5A | −0.64 (18) | C1B—C2B—C3B—C4B | −0.9 (2) |
| C2A—C1A—C6A—C7A | −179.92 (11) | C2B—C3B—C4B—C5B | 0.3 (2) |
| C5A—C6A—C7A—O2A | 20.53 (16) | C3B—C4B—C5B—C6B | 0.7 (2) |
| C1A—C6A—C7A—O2A | −160.20 (11) | C4B—C5B—C6B—C1B | −1.17 (19) |
| C5A—C6A—C7A—O1A | −160.22 (11) | C4B—C5B—C6B—C7B | −179.87 (11) |
| C1A—C6A—C7A—O1A | 19.05 (16) | C2B—C1B—C6B—C5B | 0.6 (2) |
| C12—N1—C8—N2 | −179.66 (11) | C2B—C1B—C6B—C7B | 179.24 (12) |
| C12—N1—C8—C9 | 0.88 (17) | C5B—C6B—C7B—O2B | 9.93 (17) |
| N2—C8—C9—N3 | −0.17 (18) | C1B—C6B—C7B—O2B | −168.74 (12) |
| N1—C8—C9—N3 | 179.27 (11) | C5B—C6B—C7B—O1B | −170.02 (11) |
| N2—C8—C9—C10 | 179.17 (11) | C1B—C6B—C7B—O1B | 11.31 (17) |
| N1—C8—C9—C10 | −1.39 (16) |
| H··· | ||||
| O1B—H1OB···O1A | 0.93 (2) | 1.66 (2) | 2.5796 (13) | 173 (2) |
| N1—H1N1···O1A | 0.89 (2) | 2.35 (2) | 3.0786 (13) | 140 (1) |
| N1—H1N1···O2A | 0.89 (2) | 2.01 (2) | 2.8514 (13) | 158 (2) |
| N2—H1N2···O2Ai | 0.87 (2) | 2.07 (2) | 2.9370 (14) | 173 (2) |
| N2—H2N2···O1A | 0.87 (2) | 2.08 (2) | 2.9038 (14) | 157 (2) |
| N3—H1N3···O2Ai | 0.88 (2) | 2.18 (2) | 3.0543 (15) | 175 (2) |
| N3—H2N3···O1Aii | 0.86 (2) | 2.59 (2) | 3.0649 (14) | 116 (1) |
| N3—H2N3···O2Bii | 0.86 (2) | 2.16 (2) | 2.9912 (15) | 162 (1) |
| C10—H10A···O2Bii | 0.93 | 2.58 | 3.3375 (14) | 138 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.93 (2) | 1.66 (2) | 2.5796 (13) | 173 (2) |
| N1—H1 | 0.89 (2) | 2.35 (2) | 3.0786 (13) | 140 (1) |
| N1—H1 | 0.89 (2) | 2.01 (2) | 2.8514 (13) | 158 (2) |
| N2—H1 | 0.87 (2) | 2.07 (2) | 2.9370 (14) | 173 (2) |
| N2—H2 | 0.87 (2) | 2.08 (2) | 2.9038 (14) | 157 (2) |
| N3—H1 | 0.88 (2) | 2.18 (2) | 3.0543 (15) | 175 (2) |
| N3—H2 | 0.86 (2) | 2.59 (2) | 3.0649 (14) | 116 (1) |
| N3—H2 | 0.86 (2) | 2.16 (2) | 2.9912 (15) | 162 (1) |
| C10—H10 | 0.93 | 2.58 | 3.3375 (14) | 138 |
Symmetry codes: (i) ; (ii) .