Literature DB >> 21582806

2,3-Diamino-pyridinium 4-nitro-benzoate.

Kasthuri Balasubramani1, Hoong-Kun Fun.   

Abstract

In the title salt, C(5)H(8)N(3) (+)·C(7)H(4)NO(4) (-), the pyridine N atom of the 2,3-diamino-pyridine mol-ecule is protonated. The protonated N atom and one of the two 2-amino groups are hydrogen bonded to the 4-nitro-benzoate anion through a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. The carboxyl-ate mean plane of the 4-nitro-benzoate anion is twisted by 3.77 (5)° from the attached ring and the nitro group is similarly twisted by 2.28 (10)°. In the crystal, the mol-ecules are linked by N-H⋯O and C-H⋯O inter-actions into sheets parallel to (100).

Entities:  

Year:  2009        PMID: 21582806      PMCID: PMC2969435          DOI: 10.1107/S160053680902100X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶); Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H8N3C7H4NO4 M = 276.26 Monoclinic, a = 8.0827 (2) Å b = 6.7365 (1) Å c = 11.4489 (3) Å β = 101.967 (1)° V = 609.83 (2) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.25 × 0.17 × 0.10 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.972, T max = 0.988 11659 measured reflections 2808 independent reflections 2155 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.116 S = 1.04 2808 reflections 229 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTLsoftware used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680902100X/tk2462sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902100X/tk2462Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8N3+·C7H4NO4F(000) = 288
Mr = 276.26Dx = 1.504 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2526 reflections
a = 8.0827 (2) Åθ = 2.8–31.7°
b = 6.7365 (1) ŵ = 0.12 mm1
c = 11.4489 (3) ÅT = 100 K
β = 101.967 (1)°Block, brown
V = 609.83 (2) Å30.25 × 0.17 × 0.10 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer2808 independent reflections
Radiation source: fine-focus sealed tube2155 reflections with I > 2σ(I)
graphiteRint = 0.045
φ and ω scansθmax = 34.9°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→12
Tmin = 0.972, Tmax = 0.988k = −10→10
11659 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0571P)2 + 0.026P] where P = (Fo2 + 2Fc2)/3
2808 reflections(Δ/σ)max < 0.001
229 parametersΔρmax = 0.43 e Å3
1 restraintΔρmin = −0.30 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.0506 (2)−0.7085 (2)0.85306 (17)0.0306 (4)
O2−0.04637 (19)−0.7831 (2)0.66897 (16)0.0269 (4)
O30.35100 (19)0.1109 (2)0.60686 (14)0.0223 (3)
O40.35695 (19)0.1713 (2)0.79972 (14)0.0210 (3)
N4−0.0141 (2)−0.6717 (3)0.75606 (18)0.0213 (4)
C10.1816 (2)−0.1740 (3)0.82546 (19)0.0178 (4)
C20.1021 (2)−0.3532 (3)0.8391 (2)0.0183 (4)
C30.0723 (2)−0.4824 (3)0.7432 (2)0.0178 (4)
C40.1172 (2)−0.4421 (3)0.6355 (2)0.0196 (4)
C50.1973 (2)−0.2624 (3)0.6234 (2)0.0180 (4)
C60.2309 (2)−0.1287 (3)0.71862 (19)0.0162 (4)
C70.3201 (2)0.0666 (3)0.70675 (18)0.0169 (4)
N10.5459 (2)0.4983 (2)0.80784 (16)0.0179 (3)
N20.5600 (2)0.4619 (3)0.60992 (18)0.0213 (4)
N30.7324 (2)0.8308 (3)0.62077 (18)0.0212 (4)
C80.5959 (2)0.5681 (3)0.71027 (19)0.0166 (4)
C90.6873 (2)0.7522 (3)0.72040 (19)0.0168 (4)
C100.7217 (2)0.8451 (3)0.8301 (2)0.0197 (4)
C110.6717 (2)0.7629 (3)0.9295 (2)0.0213 (4)
C120.5820 (2)0.5895 (3)0.91644 (19)0.0199 (4)
H1A0.201 (3)−0.084 (4)0.887 (2)0.020 (6)*
H2A0.068 (3)−0.384 (4)0.914 (2)0.020 (6)*
H4A0.089 (3)−0.535 (5)0.569 (2)0.033 (7)*
H5A0.232 (3)−0.233 (4)0.547 (2)0.021 (6)*
H10A0.782 (3)0.972 (5)0.834 (2)0.029 (7)*
H11A0.711 (3)0.821 (4)1.010 (2)0.027 (7)*
H12A0.540 (3)0.527 (4)0.978 (2)0.021 (6)*
H1N10.478 (3)0.375 (5)0.793 (3)0.038 (8)*
H1N20.497 (4)0.353 (5)0.608 (3)0.038 (8)*
H2N20.579 (3)0.496 (4)0.542 (2)0.017 (6)*
H1N30.735 (3)0.759 (5)0.560 (2)0.025 (7)*
H2N30.806 (4)0.917 (5)0.635 (3)0.037 (8)*
U11U22U33U12U13U23
O10.0374 (9)0.0213 (8)0.0368 (10)−0.0086 (6)0.0162 (8)0.0038 (7)
O20.0274 (7)0.0170 (7)0.0348 (10)−0.0058 (6)0.0027 (7)−0.0027 (7)
O30.0293 (7)0.0175 (6)0.0226 (8)−0.0035 (5)0.0109 (6)0.0002 (6)
O40.0281 (7)0.0164 (6)0.0199 (8)−0.0056 (5)0.0083 (6)−0.0023 (6)
N40.0165 (7)0.0146 (7)0.0320 (10)−0.0015 (6)0.0030 (7)0.0026 (8)
C10.0213 (8)0.0139 (8)0.0187 (10)−0.0012 (7)0.0053 (7)−0.0008 (8)
C20.0185 (8)0.0155 (8)0.0215 (10)−0.0007 (6)0.0054 (7)0.0030 (8)
C30.0166 (8)0.0116 (7)0.0255 (11)−0.0015 (6)0.0053 (7)0.0010 (7)
C40.0216 (8)0.0132 (8)0.0249 (11)−0.0008 (6)0.0067 (8)−0.0015 (8)
C50.0205 (8)0.0146 (8)0.0196 (10)−0.0010 (7)0.0056 (7)−0.0018 (8)
C60.0176 (8)0.0111 (8)0.0201 (10)0.0012 (6)0.0043 (7)0.0032 (7)
C70.0180 (8)0.0128 (8)0.0208 (10)0.0003 (6)0.0058 (7)0.0008 (8)
N10.0188 (7)0.0161 (7)0.0191 (9)−0.0021 (6)0.0048 (6)0.0004 (7)
N20.0300 (9)0.0176 (8)0.0182 (9)−0.0056 (6)0.0094 (7)−0.0014 (7)
N30.0273 (8)0.0178 (7)0.0201 (9)−0.0061 (7)0.0089 (7)−0.0003 (8)
C80.0158 (7)0.0136 (8)0.0208 (10)−0.0012 (6)0.0046 (7)0.0007 (8)
C90.0157 (7)0.0161 (8)0.0189 (9)0.0003 (6)0.0042 (6)0.0023 (8)
C100.0199 (8)0.0168 (8)0.0228 (11)−0.0021 (7)0.0055 (7)−0.0018 (8)
C110.0210 (8)0.0225 (9)0.0206 (11)−0.0001 (7)0.0051 (7)−0.0028 (8)
C120.0201 (8)0.0223 (9)0.0176 (10)−0.0010 (7)0.0045 (7)0.0004 (8)
O1—N41.232 (2)N1—C81.349 (3)
O2—N41.232 (2)N1—C121.363 (3)
O3—C71.256 (2)N1—H1N10.99 (3)
O4—C71.260 (2)N2—C81.333 (3)
N4—C31.476 (2)N2—H1N20.89 (3)
C1—C21.391 (3)N2—H2N20.85 (3)
C1—C61.397 (3)N3—C91.373 (3)
C1—H1A0.92 (3)N3—H1N30.85 (3)
C2—C31.383 (3)N3—H2N30.82 (3)
C2—H2A0.98 (3)C8—C91.435 (3)
C3—C41.382 (3)C9—C101.379 (3)
C4—C51.394 (3)C10—C111.399 (3)
C4—H4A0.98 (3)C10—H10A0.98 (3)
C5—C61.396 (3)C11—C121.367 (3)
C5—H5A0.99 (3)C11—H11A0.99 (3)
C6—C71.520 (3)C12—H12A0.94 (3)
O2—N4—O1123.84 (17)C8—N1—C12123.62 (17)
O2—N4—C3118.06 (18)C8—N1—H1N1113.8 (17)
O1—N4—C3118.10 (18)C12—N1—H1N1122.6 (17)
C2—C1—C6120.69 (19)C8—N2—H1N2119.0 (19)
C2—C1—H1A119.4 (17)C8—N2—H2N2126.1 (17)
C6—C1—H1A119.9 (17)H1N2—N2—H2N2114 (2)
C3—C2—C1117.7 (2)C9—N3—H1N3121 (2)
C3—C2—H2A122.2 (16)C9—N3—H2N3114 (2)
C1—C2—H2A120.1 (16)H1N3—N3—H2N3115 (3)
C4—C3—C2123.38 (18)N2—C8—N1118.49 (17)
C4—C3—N4118.44 (18)N2—C8—C9123.34 (19)
C2—C3—N4118.18 (18)N1—C8—C9118.16 (18)
C3—C4—C5118.21 (19)N3—C9—C10122.90 (18)
C3—C4—H4A120.7 (17)N3—C9—C8119.10 (19)
C5—C4—H4A121.1 (17)C10—C9—C8117.97 (18)
C4—C5—C6120.13 (19)C9—C10—C11121.58 (18)
C4—C5—H5A118.6 (16)C9—C10—H10A116.5 (16)
C6—C5—H5A121.2 (16)C11—C10—H10A121.9 (16)
C5—C6—C1119.87 (17)C12—C11—C10119.1 (2)
C5—C6—C7120.51 (17)C12—C11—H11A120.1 (16)
C1—C6—C7119.62 (17)C10—C11—H11A120.5 (16)
O3—C7—O4125.37 (18)N1—C12—C11119.6 (2)
O3—C7—C6118.35 (18)N1—C12—H12A115.8 (16)
O4—C7—C6116.28 (17)C11—C12—H12A124.6 (16)
C6—C1—C2—C3−0.8 (3)C1—C6—C7—O3−174.40 (17)
C1—C2—C3—C4−0.1 (3)C5—C6—C7—O4−174.72 (17)
C1—C2—C3—N4−179.16 (16)C1—C6—C7—O45.6 (2)
O2—N4—C3—C4−1.9 (3)C12—N1—C8—N2177.00 (18)
O1—N4—C3—C4178.55 (18)C12—N1—C8—C9−2.2 (3)
O2—N4—C3—C2177.21 (18)N2—C8—C9—N33.9 (3)
O1—N4—C3—C2−2.3 (3)N1—C8—C9—N3−176.90 (17)
C2—C3—C4—C50.4 (3)N2—C8—C9—C10−177.88 (18)
N4—C3—C4—C5179.44 (17)N1—C8—C9—C101.3 (2)
C3—C4—C5—C60.2 (3)N3—C9—C10—C11178.94 (19)
C4—C5—C6—C1−1.0 (3)C8—C9—C10—C110.8 (3)
C4—C5—C6—C7179.32 (16)C9—C10—C11—C12−2.1 (3)
C2—C1—C6—C51.3 (3)C8—N1—C12—C110.9 (3)
C2—C1—C6—C7−179.02 (17)C10—C11—C12—N11.3 (3)
C5—C6—C7—O35.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O40.99 (3)1.70 (3)2.671 (2)167 (3)
N2—H1N2···O30.89 (3)2.01 (3)2.901 (2)178 (5)
N2—H2N2···O3i0.86 (2)2.06 (2)2.903 (2)171 (2)
N3—H1N3···O3i0.85 (3)2.14 (3)2.951 (3)159 (2)
N3—H2N3···O2ii0.82 (3)2.34 (3)3.140 (2)165 (3)
C10—H10A···O1ii0.98 (3)2.53 (3)3.507 (2)176.9 (16)
C11—H11A···O4iii0.99 (2)2.56 (2)3.216 (3)123.5 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O40.99 (3)1.70 (3)2.671 (2)167 (3)
N2—H1N2⋯O30.89 (3)2.01 (3)2.901 (2)178 (5)
N2—H2N2⋯O3i0.86 (2)2.06 (2)2.903 (2)171 (2)
N3—H1N3⋯O3i0.85 (3)2.14 (3)2.951 (3)159 (2)
N3—H2N3⋯O2ii0.82 (3)2.34 (3)3.140 (2)165 (3)
C10—H10A⋯O1ii0.98 (3)2.53 (3)3.507 (2)177 (2)
C11—H11A⋯O4iii0.99 (2)2.56 (2)3.216 (3)124 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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