| Literature DB >> 21582806 |
Kasthuri Balasubramani1, Hoong-Kun Fun.
Abstract
In the title salt, C(5)H(8)N(3) (+)·C(7)H(4)NO(4) (-), the pyridine N atom of the 2,3-diamino-pyridine mol-ecule is protonated. The protonated N atom and one of the two 2-amino groups are hydrogen bonded to the 4-nitro-benzoate anion through a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. The carboxyl-ate mean plane of the 4-nitro-benzoate anion is twisted by 3.77 (5)° from the attached ring and the nitro group is similarly twisted by 2.28 (10)°. In the crystal, the mol-ecules are linked by N-H⋯O and C-H⋯O inter-actions into sheets parallel to (100).Entities:
Year: 2009 PMID: 21582806 PMCID: PMC2969435 DOI: 10.1107/S160053680902100X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H8N3+·C7H4NO4− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 2526 reflections |
| θ = 2.8–31.7° | |
| µ = 0.12 mm−1 | |
| β = 101.967 (1)° | Block, brown |
| 0.25 × 0.17 × 0.10 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2808 independent reflections |
| Radiation source: fine-focus sealed tube | 2155 reflections with |
| graphite | |
| φ and ω scans | θmax = 34.9°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 11659 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2808 reflections | (Δ/σ)max < 0.001 |
| 229 parameters | Δρmax = 0.43 e Å−3 |
| 1 restraint | Δρmin = −0.30 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | −0.0506 (2) | −0.7085 (2) | 0.85306 (17) | 0.0306 (4) | |
| O2 | −0.04637 (19) | −0.7831 (2) | 0.66897 (16) | 0.0269 (4) | |
| O3 | 0.35100 (19) | 0.1109 (2) | 0.60686 (14) | 0.0223 (3) | |
| O4 | 0.35695 (19) | 0.1713 (2) | 0.79972 (14) | 0.0210 (3) | |
| N4 | −0.0141 (2) | −0.6717 (3) | 0.75606 (18) | 0.0213 (4) | |
| C1 | 0.1816 (2) | −0.1740 (3) | 0.82546 (19) | 0.0178 (4) | |
| C2 | 0.1021 (2) | −0.3532 (3) | 0.8391 (2) | 0.0183 (4) | |
| C3 | 0.0723 (2) | −0.4824 (3) | 0.7432 (2) | 0.0178 (4) | |
| C4 | 0.1172 (2) | −0.4421 (3) | 0.6355 (2) | 0.0196 (4) | |
| C5 | 0.1973 (2) | −0.2624 (3) | 0.6234 (2) | 0.0180 (4) | |
| C6 | 0.2309 (2) | −0.1287 (3) | 0.71862 (19) | 0.0162 (4) | |
| C7 | 0.3201 (2) | 0.0666 (3) | 0.70675 (18) | 0.0169 (4) | |
| N1 | 0.5459 (2) | 0.4983 (2) | 0.80784 (16) | 0.0179 (3) | |
| N2 | 0.5600 (2) | 0.4619 (3) | 0.60992 (18) | 0.0213 (4) | |
| N3 | 0.7324 (2) | 0.8308 (3) | 0.62077 (18) | 0.0212 (4) | |
| C8 | 0.5959 (2) | 0.5681 (3) | 0.71027 (19) | 0.0166 (4) | |
| C9 | 0.6873 (2) | 0.7522 (3) | 0.72040 (19) | 0.0168 (4) | |
| C10 | 0.7217 (2) | 0.8451 (3) | 0.8301 (2) | 0.0197 (4) | |
| C11 | 0.6717 (2) | 0.7629 (3) | 0.9295 (2) | 0.0213 (4) | |
| C12 | 0.5820 (2) | 0.5895 (3) | 0.91644 (19) | 0.0199 (4) | |
| H1A | 0.201 (3) | −0.084 (4) | 0.887 (2) | 0.020 (6)* | |
| H2A | 0.068 (3) | −0.384 (4) | 0.914 (2) | 0.020 (6)* | |
| H4A | 0.089 (3) | −0.535 (5) | 0.569 (2) | 0.033 (7)* | |
| H5A | 0.232 (3) | −0.233 (4) | 0.547 (2) | 0.021 (6)* | |
| H10A | 0.782 (3) | 0.972 (5) | 0.834 (2) | 0.029 (7)* | |
| H11A | 0.711 (3) | 0.821 (4) | 1.010 (2) | 0.027 (7)* | |
| H12A | 0.540 (3) | 0.527 (4) | 0.978 (2) | 0.021 (6)* | |
| H1N1 | 0.478 (3) | 0.375 (5) | 0.793 (3) | 0.038 (8)* | |
| H1N2 | 0.497 (4) | 0.353 (5) | 0.608 (3) | 0.038 (8)* | |
| H2N2 | 0.579 (3) | 0.496 (4) | 0.542 (2) | 0.017 (6)* | |
| H1N3 | 0.735 (3) | 0.759 (5) | 0.560 (2) | 0.025 (7)* | |
| H2N3 | 0.806 (4) | 0.917 (5) | 0.635 (3) | 0.037 (8)* |
| O1 | 0.0374 (9) | 0.0213 (8) | 0.0368 (10) | −0.0086 (6) | 0.0162 (8) | 0.0038 (7) |
| O2 | 0.0274 (7) | 0.0170 (7) | 0.0348 (10) | −0.0058 (6) | 0.0027 (7) | −0.0027 (7) |
| O3 | 0.0293 (7) | 0.0175 (6) | 0.0226 (8) | −0.0035 (5) | 0.0109 (6) | 0.0002 (6) |
| O4 | 0.0281 (7) | 0.0164 (6) | 0.0199 (8) | −0.0056 (5) | 0.0083 (6) | −0.0023 (6) |
| N4 | 0.0165 (7) | 0.0146 (7) | 0.0320 (10) | −0.0015 (6) | 0.0030 (7) | 0.0026 (8) |
| C1 | 0.0213 (8) | 0.0139 (8) | 0.0187 (10) | −0.0012 (7) | 0.0053 (7) | −0.0008 (8) |
| C2 | 0.0185 (8) | 0.0155 (8) | 0.0215 (10) | −0.0007 (6) | 0.0054 (7) | 0.0030 (8) |
| C3 | 0.0166 (8) | 0.0116 (7) | 0.0255 (11) | −0.0015 (6) | 0.0053 (7) | 0.0010 (7) |
| C4 | 0.0216 (8) | 0.0132 (8) | 0.0249 (11) | −0.0008 (6) | 0.0067 (8) | −0.0015 (8) |
| C5 | 0.0205 (8) | 0.0146 (8) | 0.0196 (10) | −0.0010 (7) | 0.0056 (7) | −0.0018 (8) |
| C6 | 0.0176 (8) | 0.0111 (8) | 0.0201 (10) | 0.0012 (6) | 0.0043 (7) | 0.0032 (7) |
| C7 | 0.0180 (8) | 0.0128 (8) | 0.0208 (10) | 0.0003 (6) | 0.0058 (7) | 0.0008 (8) |
| N1 | 0.0188 (7) | 0.0161 (7) | 0.0191 (9) | −0.0021 (6) | 0.0048 (6) | 0.0004 (7) |
| N2 | 0.0300 (9) | 0.0176 (8) | 0.0182 (9) | −0.0056 (6) | 0.0094 (7) | −0.0014 (7) |
| N3 | 0.0273 (8) | 0.0178 (7) | 0.0201 (9) | −0.0061 (7) | 0.0089 (7) | −0.0003 (8) |
| C8 | 0.0158 (7) | 0.0136 (8) | 0.0208 (10) | −0.0012 (6) | 0.0046 (7) | 0.0007 (8) |
| C9 | 0.0157 (7) | 0.0161 (8) | 0.0189 (9) | 0.0003 (6) | 0.0042 (6) | 0.0023 (8) |
| C10 | 0.0199 (8) | 0.0168 (8) | 0.0228 (11) | −0.0021 (7) | 0.0055 (7) | −0.0018 (8) |
| C11 | 0.0210 (8) | 0.0225 (9) | 0.0206 (11) | −0.0001 (7) | 0.0051 (7) | −0.0028 (8) |
| C12 | 0.0201 (8) | 0.0223 (9) | 0.0176 (10) | −0.0010 (7) | 0.0045 (7) | 0.0004 (8) |
| O1—N4 | 1.232 (2) | N1—C8 | 1.349 (3) |
| O2—N4 | 1.232 (2) | N1—C12 | 1.363 (3) |
| O3—C7 | 1.256 (2) | N1—H1N1 | 0.99 (3) |
| O4—C7 | 1.260 (2) | N2—C8 | 1.333 (3) |
| N4—C3 | 1.476 (2) | N2—H1N2 | 0.89 (3) |
| C1—C2 | 1.391 (3) | N2—H2N2 | 0.85 (3) |
| C1—C6 | 1.397 (3) | N3—C9 | 1.373 (3) |
| C1—H1A | 0.92 (3) | N3—H1N3 | 0.85 (3) |
| C2—C3 | 1.383 (3) | N3—H2N3 | 0.82 (3) |
| C2—H2A | 0.98 (3) | C8—C9 | 1.435 (3) |
| C3—C4 | 1.382 (3) | C9—C10 | 1.379 (3) |
| C4—C5 | 1.394 (3) | C10—C11 | 1.399 (3) |
| C4—H4A | 0.98 (3) | C10—H10A | 0.98 (3) |
| C5—C6 | 1.396 (3) | C11—C12 | 1.367 (3) |
| C5—H5A | 0.99 (3) | C11—H11A | 0.99 (3) |
| C6—C7 | 1.520 (3) | C12—H12A | 0.94 (3) |
| O2—N4—O1 | 123.84 (17) | C8—N1—C12 | 123.62 (17) |
| O2—N4—C3 | 118.06 (18) | C8—N1—H1N1 | 113.8 (17) |
| O1—N4—C3 | 118.10 (18) | C12—N1—H1N1 | 122.6 (17) |
| C2—C1—C6 | 120.69 (19) | C8—N2—H1N2 | 119.0 (19) |
| C2—C1—H1A | 119.4 (17) | C8—N2—H2N2 | 126.1 (17) |
| C6—C1—H1A | 119.9 (17) | H1N2—N2—H2N2 | 114 (2) |
| C3—C2—C1 | 117.7 (2) | C9—N3—H1N3 | 121 (2) |
| C3—C2—H2A | 122.2 (16) | C9—N3—H2N3 | 114 (2) |
| C1—C2—H2A | 120.1 (16) | H1N3—N3—H2N3 | 115 (3) |
| C4—C3—C2 | 123.38 (18) | N2—C8—N1 | 118.49 (17) |
| C4—C3—N4 | 118.44 (18) | N2—C8—C9 | 123.34 (19) |
| C2—C3—N4 | 118.18 (18) | N1—C8—C9 | 118.16 (18) |
| C3—C4—C5 | 118.21 (19) | N3—C9—C10 | 122.90 (18) |
| C3—C4—H4A | 120.7 (17) | N3—C9—C8 | 119.10 (19) |
| C5—C4—H4A | 121.1 (17) | C10—C9—C8 | 117.97 (18) |
| C4—C5—C6 | 120.13 (19) | C9—C10—C11 | 121.58 (18) |
| C4—C5—H5A | 118.6 (16) | C9—C10—H10A | 116.5 (16) |
| C6—C5—H5A | 121.2 (16) | C11—C10—H10A | 121.9 (16) |
| C5—C6—C1 | 119.87 (17) | C12—C11—C10 | 119.1 (2) |
| C5—C6—C7 | 120.51 (17) | C12—C11—H11A | 120.1 (16) |
| C1—C6—C7 | 119.62 (17) | C10—C11—H11A | 120.5 (16) |
| O3—C7—O4 | 125.37 (18) | N1—C12—C11 | 119.6 (2) |
| O3—C7—C6 | 118.35 (18) | N1—C12—H12A | 115.8 (16) |
| O4—C7—C6 | 116.28 (17) | C11—C12—H12A | 124.6 (16) |
| C6—C1—C2—C3 | −0.8 (3) | C1—C6—C7—O3 | −174.40 (17) |
| C1—C2—C3—C4 | −0.1 (3) | C5—C6—C7—O4 | −174.72 (17) |
| C1—C2—C3—N4 | −179.16 (16) | C1—C6—C7—O4 | 5.6 (2) |
| O2—N4—C3—C4 | −1.9 (3) | C12—N1—C8—N2 | 177.00 (18) |
| O1—N4—C3—C4 | 178.55 (18) | C12—N1—C8—C9 | −2.2 (3) |
| O2—N4—C3—C2 | 177.21 (18) | N2—C8—C9—N3 | 3.9 (3) |
| O1—N4—C3—C2 | −2.3 (3) | N1—C8—C9—N3 | −176.90 (17) |
| C2—C3—C4—C5 | 0.4 (3) | N2—C8—C9—C10 | −177.88 (18) |
| N4—C3—C4—C5 | 179.44 (17) | N1—C8—C9—C10 | 1.3 (2) |
| C3—C4—C5—C6 | 0.2 (3) | N3—C9—C10—C11 | 178.94 (19) |
| C4—C5—C6—C1 | −1.0 (3) | C8—C9—C10—C11 | 0.8 (3) |
| C4—C5—C6—C7 | 179.32 (16) | C9—C10—C11—C12 | −2.1 (3) |
| C2—C1—C6—C5 | 1.3 (3) | C8—N1—C12—C11 | 0.9 (3) |
| C2—C1—C6—C7 | −179.02 (17) | C10—C11—C12—N1 | 1.3 (3) |
| C5—C6—C7—O3 | 5.3 (3) |
| H··· | ||||
| N1—H1N1···O4 | 0.99 (3) | 1.70 (3) | 2.671 (2) | 167 (3) |
| N2—H1N2···O3 | 0.89 (3) | 2.01 (3) | 2.901 (2) | 178 (5) |
| N2—H2N2···O3i | 0.86 (2) | 2.06 (2) | 2.903 (2) | 171 (2) |
| N3—H1N3···O3i | 0.85 (3) | 2.14 (3) | 2.951 (3) | 159 (2) |
| N3—H2N3···O2ii | 0.82 (3) | 2.34 (3) | 3.140 (2) | 165 (3) |
| C10—H10A···O1ii | 0.98 (3) | 2.53 (3) | 3.507 (2) | 176.9 (16) |
| C11—H11A···O4iii | 0.99 (2) | 2.56 (2) | 3.216 (3) | 123.5 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.99 (3) | 1.70 (3) | 2.671 (2) | 167 (3) |
| N2—H1 | 0.89 (3) | 2.01 (3) | 2.901 (2) | 178 (5) |
| N2—H2 | 0.86 (2) | 2.06 (2) | 2.903 (2) | 171 (2) |
| N3—H1 | 0.85 (3) | 2.14 (3) | 2.951 (3) | 159 (2) |
| N3—H2 | 0.82 (3) | 2.34 (3) | 3.140 (2) | 165 (3) |
| C10—H10 | 0.98 (3) | 2.53 (3) | 3.507 (2) | 177 (2) |
| C11—H11 | 0.99 (2) | 2.56 (2) | 3.216 (3) | 124 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .