| Literature DB >> 21582796 |
Hoong-Kun Fun1, Kasthuri Balasubramani.
Abstract
In the title compound, C(5)H(8)N(3) (+)·C(7)H(5)O(3) (-), the pyridine N atom is protonated. In the 4-hydroxy-benzoate anion, the carboxyl-ate group is twisted slightly out of the benzene ring plane by an angle of 3.77 (5)°. The protonated N atom and one of the two amino groups are hydrogen-bonded to the 4-hydroxy-benzoate anion through a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. The crystal structure is further stabilized by O-H⋯O and C-H⋯O hydrogen bonds and π-π inter-actions involving the pyridinium rings [centroid-centroid distance of 3.6277 (5) Å], leading to the formation of a three-dimensional network.Entities:
Year: 2009 PMID: 21582796 PMCID: PMC2969455 DOI: 10.1107/S1600536809020832
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H8N3+·C7H5O3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9979 reflections |
| θ = 2.7–37.8° | |
| µ = 0.10 mm−1 | |
| β = 112.644 (1)° | Plate, brown |
| 0.51 × 0.39 × 0.14 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 5296 independent reflections |
| Radiation source: fine-focus sealed tube | 4257 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 25821 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5296 reflections | (Δ/σ)max = 0.001 |
| 215 parameters | Δρmax = 0.65 e Å−3 |
| 0 restraints | Δρmin = −0.18 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.45467 (8) | 0.16900 (6) | 0.43336 (6) | 0.02563 (15) | |
| O2 | 0.84786 (7) | 0.61461 (5) | 0.52034 (5) | 0.02074 (13) | |
| O3 | 0.73136 (6) | 0.62156 (5) | 0.30541 (5) | 0.01784 (12) | |
| N1 | 1.01845 (8) | 0.79427 (6) | 0.49674 (6) | 0.01857 (14) | |
| N2 | 0.87767 (8) | 0.81703 (7) | 0.27844 (7) | 0.02195 (15) | |
| N3 | 1.05767 (9) | 0.99458 (8) | 0.25977 (7) | 0.02666 (17) | |
| C1 | 0.57827 (9) | 0.42070 (7) | 0.30431 (7) | 0.01757 (14) | |
| C2 | 0.50323 (9) | 0.32084 (7) | 0.30618 (7) | 0.01879 (15) | |
| C3 | 0.52248 (9) | 0.26810 (7) | 0.42538 (7) | 0.01899 (15) | |
| C4 | 0.61617 (11) | 0.31656 (8) | 0.54174 (8) | 0.02518 (18) | |
| C5 | 0.69083 (10) | 0.41624 (8) | 0.53881 (7) | 0.02324 (17) | |
| C6 | 0.67313 (8) | 0.46970 (7) | 0.41995 (7) | 0.01604 (14) | |
| C7 | 0.75521 (8) | 0.57533 (6) | 0.41592 (7) | 0.01540 (14) | |
| C8 | 0.99181 (9) | 0.84838 (7) | 0.38181 (7) | 0.01678 (14) | |
| C9 | 1.08674 (9) | 0.93716 (7) | 0.37590 (7) | 0.01803 (15) | |
| C10 | 1.20049 (9) | 0.96332 (8) | 0.48910 (8) | 0.02092 (16) | |
| C11 | 1.22331 (9) | 0.90438 (8) | 0.60700 (8) | 0.02314 (17) | |
| C12 | 1.13117 (10) | 0.82008 (8) | 0.60867 (8) | 0.02224 (17) | |
| H1 | 0.5647 (15) | 0.4565 (11) | 0.2226 (13) | 0.031 (3)* | |
| H2 | 0.4376 (14) | 0.2854 (12) | 0.2229 (13) | 0.029 (3)* | |
| H4 | 0.6280 (18) | 0.2759 (15) | 0.6232 (17) | 0.051 (4)* | |
| H5 | 0.7615 (17) | 0.4479 (13) | 0.6225 (15) | 0.039 (4)* | |
| H10 | 1.2669 (14) | 1.0227 (12) | 0.4848 (12) | 0.028 (3)* | |
| H11 | 1.3091 (16) | 0.9246 (13) | 0.6883 (14) | 0.039 (4)* | |
| H12 | 1.1341 (17) | 0.7745 (14) | 0.6809 (15) | 0.043 (4)* | |
| H1N1 | 0.9588 (15) | 0.7391 (12) | 0.4987 (13) | 0.031 (3)* | |
| H1N2 | 0.8601 (17) | 0.8454 (12) | 0.2011 (15) | 0.033 (3)* | |
| H2N2 | 0.8275 (15) | 0.7565 (12) | 0.2854 (13) | 0.027 (3)* | |
| H1N3 | 0.9924 (17) | 0.9660 (13) | 0.1840 (15) | 0.040 (4)* | |
| H2N3 | 1.1284 (16) | 1.0365 (12) | 0.2548 (14) | 0.034 (3)* | |
| H1O1 | 0.3995 (19) | 0.1445 (15) | 0.3531 (18) | 0.051 (5)* |
| O1 | 0.0299 (3) | 0.0248 (3) | 0.0172 (3) | −0.0123 (2) | 0.0034 (2) | 0.0013 (2) |
| O2 | 0.0238 (3) | 0.0217 (3) | 0.0141 (2) | −0.0059 (2) | 0.0044 (2) | −0.00153 (19) |
| O3 | 0.0188 (3) | 0.0178 (3) | 0.0149 (2) | 0.0002 (2) | 0.00434 (19) | 0.00308 (19) |
| N1 | 0.0200 (3) | 0.0194 (3) | 0.0148 (3) | −0.0020 (2) | 0.0051 (2) | 0.0018 (2) |
| N2 | 0.0232 (3) | 0.0234 (3) | 0.0154 (3) | −0.0072 (3) | 0.0031 (2) | 0.0021 (2) |
| N3 | 0.0284 (4) | 0.0324 (4) | 0.0171 (3) | −0.0118 (3) | 0.0065 (3) | 0.0037 (3) |
| C1 | 0.0190 (3) | 0.0187 (3) | 0.0131 (3) | −0.0014 (3) | 0.0041 (2) | 0.0005 (2) |
| C2 | 0.0198 (4) | 0.0205 (3) | 0.0131 (3) | −0.0037 (3) | 0.0031 (2) | −0.0007 (2) |
| C3 | 0.0202 (4) | 0.0199 (3) | 0.0150 (3) | −0.0046 (3) | 0.0047 (3) | −0.0001 (2) |
| C4 | 0.0316 (5) | 0.0273 (4) | 0.0130 (3) | −0.0114 (3) | 0.0046 (3) | 0.0008 (3) |
| C5 | 0.0286 (4) | 0.0251 (4) | 0.0131 (3) | −0.0099 (3) | 0.0049 (3) | −0.0015 (3) |
| C6 | 0.0173 (3) | 0.0167 (3) | 0.0131 (3) | −0.0016 (2) | 0.0048 (2) | −0.0007 (2) |
| C7 | 0.0167 (3) | 0.0152 (3) | 0.0140 (3) | 0.0013 (2) | 0.0055 (2) | −0.0002 (2) |
| C8 | 0.0177 (3) | 0.0174 (3) | 0.0143 (3) | −0.0003 (3) | 0.0052 (2) | 0.0001 (2) |
| C9 | 0.0183 (3) | 0.0204 (3) | 0.0155 (3) | −0.0023 (3) | 0.0066 (2) | 0.0000 (2) |
| C10 | 0.0192 (4) | 0.0249 (4) | 0.0178 (3) | −0.0044 (3) | 0.0062 (3) | −0.0010 (3) |
| C11 | 0.0200 (4) | 0.0294 (4) | 0.0166 (3) | −0.0029 (3) | 0.0032 (3) | −0.0007 (3) |
| C12 | 0.0230 (4) | 0.0262 (4) | 0.0145 (3) | −0.0014 (3) | 0.0038 (3) | 0.0023 (3) |
| O1—C3 | 1.3565 (10) | C2—C3 | 1.3976 (11) |
| O1—H1O1 | 0.897 (18) | C2—H2 | 0.997 (13) |
| O2—C7 | 1.2666 (9) | C3—C4 | 1.3956 (11) |
| O3—C7 | 1.2702 (9) | C4—C5 | 1.3869 (12) |
| N1—C8 | 1.3484 (10) | C4—H4 | 0.982 (17) |
| N1—C12 | 1.3661 (11) | C5—C6 | 1.4014 (11) |
| N1—H1N1 | 0.888 (15) | C5—H5 | 1.001 (15) |
| N2—C8 | 1.3369 (10) | C6—C7 | 1.4896 (11) |
| N2—H1N2 | 0.869 (15) | C8—C9 | 1.4316 (11) |
| N2—H2N2 | 0.887 (14) | C9—C10 | 1.3805 (11) |
| N3—C9 | 1.3739 (10) | C10—C11 | 1.4100 (12) |
| N3—H1N3 | 0.911 (16) | C10—H10 | 0.981 (14) |
| N3—H2N3 | 0.892 (15) | C11—C12 | 1.3608 (13) |
| C1—C2 | 1.3881 (11) | C11—H11 | 1.017 (15) |
| C1—C6 | 1.3969 (10) | C12—H12 | 0.948 (15) |
| C1—H1 | 0.955 (13) | ||
| C3—O1—H1O1 | 110.1 (11) | C4—C5—H5 | 119.3 (8) |
| C8—N1—C12 | 123.47 (7) | C6—C5—H5 | 119.9 (9) |
| C8—N1—H1N1 | 117.5 (9) | C1—C6—C5 | 118.61 (7) |
| C12—N1—H1N1 | 119.1 (9) | C1—C6—C7 | 120.33 (6) |
| C8—N2—H1N2 | 121.7 (10) | C5—C6—C7 | 121.05 (7) |
| C8—N2—H2N2 | 119.1 (9) | O2—C7—O3 | 122.08 (7) |
| H1N2—N2—H2N2 | 118.2 (13) | O2—C7—C6 | 119.94 (6) |
| C9—N3—H1N3 | 120.6 (10) | O3—C7—C6 | 117.96 (6) |
| C9—N3—H2N3 | 115.4 (9) | N2—C8—N1 | 118.57 (7) |
| H1N3—N3—H2N3 | 117.8 (13) | N2—C8—C9 | 122.86 (7) |
| C2—C1—C6 | 121.05 (7) | N1—C8—C9 | 118.57 (7) |
| C2—C1—H1 | 119.4 (8) | N3—C9—C10 | 123.40 (8) |
| C6—C1—H1 | 119.5 (8) | N3—C9—C8 | 118.64 (7) |
| C1—C2—C3 | 119.72 (7) | C10—C9—C8 | 117.92 (7) |
| C1—C2—H2 | 120.4 (8) | C9—C10—C11 | 121.27 (8) |
| C3—C2—H2 | 119.9 (8) | C9—C10—H10 | 118.1 (8) |
| O1—C3—C4 | 117.67 (7) | C11—C10—H10 | 120.6 (8) |
| O1—C3—C2 | 122.47 (7) | C12—C11—C10 | 119.12 (8) |
| C4—C3—C2 | 119.85 (7) | C12—C11—H11 | 121.5 (8) |
| C5—C4—C3 | 119.99 (7) | C10—C11—H11 | 119.4 (8) |
| C5—C4—H4 | 122.8 (10) | C11—C12—N1 | 119.65 (7) |
| C3—C4—H4 | 117.2 (10) | C11—C12—H12 | 127.5 (10) |
| C4—C5—C6 | 120.78 (7) | N1—C12—H12 | 112.8 (10) |
| C6—C1—C2—C3 | −0.01 (13) | C5—C6—C7—O3 | −178.02 (8) |
| C1—C2—C3—O1 | −178.47 (8) | C12—N1—C8—N2 | −179.40 (8) |
| C1—C2—C3—C4 | 0.46 (14) | C12—N1—C8—C9 | 0.41 (12) |
| O1—C3—C4—C5 | 178.40 (9) | N2—C8—C9—N3 | 1.55 (13) |
| C2—C3—C4—C5 | −0.57 (15) | N1—C8—C9—N3 | −178.25 (8) |
| C3—C4—C5—C6 | 0.24 (15) | N2—C8—C9—C10 | 179.31 (8) |
| C2—C1—C6—C5 | −0.32 (13) | N1—C8—C9—C10 | −0.49 (12) |
| C2—C1—C6—C7 | 178.59 (7) | N3—C9—C10—C11 | 177.91 (9) |
| C4—C5—C6—C1 | 0.21 (14) | C8—C9—C10—C11 | 0.26 (13) |
| C4—C5—C6—C7 | −178.70 (9) | C9—C10—C11—C12 | 0.06 (14) |
| C1—C6—C7—O2 | −175.21 (8) | C10—C11—C12—N1 | −0.16 (14) |
| C5—C6—C7—O2 | 3.67 (12) | C8—N1—C12—C11 | −0.08 (13) |
| C1—C6—C7—O3 | 3.09 (11) |
| H··· | ||||
| N1—H1N1···O2 | 0.89 (2) | 1.903 (15) | 2.7874 (9) | 173 (1) |
| N2—H2N2···O3 | 0.89 (1) | 1.898 (14) | 2.7843 (9) | 176 (1) |
| N2—H1N2···O2i | 0.87 (1) | 2.014 (15) | 2.8689 (9) | 168 (1) |
| N3—H1N3···O2i | 0.91 (2) | 2.071 (16) | 2.9790 (10) | 174 (1) |
| N3—H2N3···O3ii | 0.89 (2) | 2.057 (15) | 2.9285 (10) | 166 (1) |
| O1—H1O1···O3iii | 0.90 (2) | 1.775 (19) | 2.6595 (8) | 168 (2) |
| C2—H2···O3iii | 1.00 (1) | 2.500 (14) | 3.2104 (10) | 128 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.89 (2) | 1.903 (15) | 2.7874 (9) | 173 (1) |
| N2—H2 | 0.89 (1) | 1.898 (14) | 2.7843 (9) | 176 (1) |
| N2—H1 | 0.87 (1) | 2.014 (15) | 2.8689 (9) | 168 (1) |
| N3—H1 | 0.91 (2) | 2.071 (16) | 2.9790 (10) | 174 (1) |
| N3—H2 | 0.89 (2) | 2.057 (15) | 2.9285 (10) | 166 (1) |
| O1—H1 | 0.90 (2) | 1.775 (19) | 2.6595 (8) | 168 (2) |
| C2—H2⋯O3iii | 1.00 (1) | 2.500 (14) | 3.2104 (10) | 128 (1) |
Symmetry codes: (i) ; (ii) ; (iii) .