Literature DB >> 21579695

Bis{2-hydroxy-imino-N'-[1-(2-pyrid-yl)ethyl-idene]propanohydrazidato}zinc(II) dihydrate.

Yurii S Moroz, Kateryna O Znovjyak, Iryna O Golenya, Svetlana V Pavlova, Matti Haukka.   

Abstract

The title compound, [Zn(C(10)H(11)N(4)O(2))(2)]·2H(2)O, was prepared by the reaction between Zn(CH(3)COO)(2)·2H(2)O and 2-hydroxy-imino-N'-[1-(2-pyrid-yl)ethyl-idene]propano-hydrazide (Hpop). The central Zn(II) atom has a distorted tetra-gonal-bipyramidal coordination geometry formed by two amide O atoms and four N atoms of two azomethine and two pyridine groups. In the crystal, complex mol-ecules form layers parallel to the crystallographic b direction. The layers are connected by O-H⋯N and O-H⋯O hydrogen bonds involving the solvent water mol-ecules.

Entities:  

Year:  2010        PMID: 21579695      PMCID: PMC2979945          DOI: 10.1107/S1600536810003351

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For zinc(II)-containing complexes with similiar ligands, see: Petrusenko et al. (1997 ▶); Comba et al. (2002 ▶); Kasuga et al. (2003 ▶). For the structural parameters of amide derivatives of 2-hydroxy­imino­propanoic acid, see: Onindo et al. (1995 ▶); Sliva et al. (1997a ▶,b ▶); Mokhir et al. (2002 ▶); Moroz et al. (2009a ▶,b ▶). For the preparation and characterization of 3d-metal complexes with 2-hydroxy­imino-N′-[1-(2-pyrid­yl)ethyl­idene]propanohydrazone, see: Moroz et al. (2008a ▶,b ▶).

Experimental

Crystal data

[Zn(C10H11N4O2)2]·2H2O M = 539.86 Triclinic, a = 8.3241 (3) Å b = 10.6299 (4) Å c = 13.9006 (5) Å α = 94.184 (2)° β = 101.389 (2)° γ = 108.052 (2)° V = 1134.48 (7) Å3 Z = 2 Mo Kα radiation μ = 1.14 mm−1 T = 100 K 0.28 × 0.07 × 0.02 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.743, T max = 0.977 21551 measured reflections 5171 independent reflections 4253 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.092 S = 1.05 5171 reflections 320 parameters H-atom parameters constrained Δρmax = 0.95 e Å−3 Δρmin = −0.39 e Å−3 Data collection: COLLECT (Bruker, 2004 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810003351/jh2129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003351/jh2129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C10H11N4O2)2]·2H2OZ = 2
Mr = 539.86F(000) = 560
Triclinic, P1Dx = 1.580 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.3241 (3) ÅCell parameters from 4952 reflections
b = 10.6299 (4) Åθ = 1.0–27.5°
c = 13.9006 (5) ŵ = 1.14 mm1
α = 94.184 (2)°T = 100 K
β = 101.389 (2)°Needle, yellow
γ = 108.052 (2)°0.28 × 0.07 × 0.02 mm
V = 1134.48 (7) Å3
Nonius KappaCCD diffractometer5171 independent reflections
Radiation source: fine-focus sealed tube4253 reflections with I > 2σ(I)
horizontally mounted graphite crystalRint = 0.048
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 2.4°
φ scans and ω scans with κ offseth = −10→10
Absorption correction: multi-scan (SADABS; Version 2008/1; Sheldrick, 2008)k = −13→13
Tmin = 0.743, Tmax = 0.977l = −18→18
21551 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0417P)2 + 0.8841P] where P = (Fo2 + 2Fc2)/3
5171 reflections(Δ/σ)max < 0.001
320 parametersΔρmax = 0.95 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.39746 (3)0.27581 (3)0.304853 (19)0.01820 (9)
O10.16169 (19)0.20226 (15)0.34643 (12)0.0202 (3)
O2−0.32670 (19)−0.16202 (17)0.32111 (13)0.0239 (4)
H2O−0.3576−0.25260.30120.036*
O30.30726 (19)0.37780 (16)0.18911 (12)0.0204 (3)
O40.4981 (2)0.70910 (18)0.00903 (13)0.0290 (4)
H4O0.60650.76010.00130.044*
O50.1803 (2)0.1858 (2)0.01793 (14)0.0367 (4)
H5P0.21190.25960.06460.055*
H5O0.12640.1984−0.03830.055*
O60.0879 (2)0.29498 (19)−0.16109 (14)0.0351 (4)
H6O0.06970.2177−0.20170.053*
H6P0.20770.3384−0.14710.053*
N10.5988 (2)0.2424 (2)0.22445 (14)0.0207 (4)
N20.3039 (2)0.07661 (19)0.24489 (14)0.0175 (4)
N30.1450 (2)0.00054 (19)0.25994 (14)0.0181 (4)
N4−0.1642 (2)−0.11100 (19)0.29900 (15)0.0205 (4)
N50.5549 (2)0.2876 (2)0.45404 (14)0.0212 (4)
N60.5524 (2)0.4762 (2)0.34417 (14)0.0190 (4)
N70.5460 (2)0.55914 (19)0.27198 (14)0.0188 (4)
N80.5314 (3)0.6441 (2)0.09127 (15)0.0230 (4)
C10.7541 (3)0.3275 (3)0.22043 (18)0.0258 (5)
H10.78570.41850.24820.031*
C20.8707 (3)0.2868 (3)0.17679 (19)0.0306 (6)
H20.98110.34860.17670.037*
C30.8235 (3)0.1560 (3)0.13393 (18)0.0288 (6)
H30.90050.12630.10350.035*
C40.6620 (3)0.0680 (3)0.13569 (18)0.0255 (5)
H40.6257−0.02240.10550.031*
C50.5538 (3)0.1148 (2)0.18269 (16)0.0203 (5)
C60.3825 (3)0.0232 (2)0.19170 (16)0.0190 (5)
C70.3161 (3)−0.1184 (3)0.14258 (19)0.0264 (5)
H7A0.3898−0.16700.17440.040*
H7B0.3181−0.12090.07220.040*
H7C0.1966−0.16060.14880.040*
C80.0873 (3)0.0788 (2)0.31405 (16)0.0165 (4)
C9−0.0868 (3)0.0123 (2)0.33642 (16)0.0174 (4)
C10−0.1580 (3)0.0927 (2)0.39855 (18)0.0223 (5)
H10A−0.28520.05830.37950.034*
H10B−0.11680.18650.38830.034*
H10C−0.11870.08600.46860.034*
C110.5453 (3)0.1915 (3)0.51063 (18)0.0249 (5)
H110.46000.10610.48650.030*
C120.6559 (3)0.2109 (3)0.60431 (19)0.0302 (6)
H120.65000.13890.64170.036*
C130.7726 (3)0.3356 (3)0.64108 (19)0.0305 (6)
H130.84730.35140.70510.037*
C140.7817 (3)0.4389 (3)0.58458 (18)0.0270 (5)
H140.86020.52650.60990.032*
C150.6724 (3)0.4112 (2)0.48927 (17)0.0212 (5)
C160.6797 (3)0.5119 (2)0.42118 (16)0.0194 (5)
C170.8289 (3)0.6397 (2)0.44150 (18)0.0255 (5)
H17A0.84760.67080.37860.038*
H17B0.93380.62500.47740.038*
H17C0.80320.70740.48180.038*
C180.4150 (3)0.4947 (2)0.19584 (17)0.0183 (4)
C190.3910 (3)0.5686 (2)0.10840 (17)0.0199 (5)
C200.2114 (3)0.5440 (3)0.04913 (19)0.0290 (6)
H20A0.21240.61320.00610.043*
H20B0.13490.54680.09400.043*
H20C0.16880.45600.00830.043*
U11U22U33U12U13U23
Zn10.01308 (13)0.01868 (15)0.01989 (15)0.00111 (10)0.00272 (10)0.00585 (10)
O10.0168 (8)0.0165 (8)0.0252 (9)0.0013 (6)0.0066 (6)0.0030 (7)
O20.0147 (8)0.0208 (9)0.0335 (10)−0.0003 (7)0.0097 (7)0.0043 (7)
O30.0172 (8)0.0173 (8)0.0217 (8)0.0009 (6)0.0003 (6)0.0054 (7)
O40.0324 (9)0.0346 (10)0.0252 (9)0.0134 (8)0.0100 (7)0.0171 (8)
O50.0357 (10)0.0396 (12)0.0305 (10)0.0057 (9)0.0089 (8)0.0057 (9)
O60.0248 (9)0.0351 (11)0.0401 (11)0.0065 (8)0.0062 (8)−0.0079 (9)
N10.0138 (9)0.0276 (11)0.0197 (10)0.0043 (8)0.0034 (7)0.0100 (8)
N20.0132 (8)0.0207 (10)0.0195 (10)0.0047 (7)0.0051 (7)0.0083 (8)
N30.0134 (9)0.0175 (10)0.0224 (10)0.0016 (7)0.0067 (7)0.0050 (8)
N40.0154 (9)0.0199 (10)0.0255 (10)0.0022 (8)0.0084 (8)0.0050 (8)
N50.0182 (9)0.0266 (11)0.0214 (10)0.0080 (8)0.0076 (8)0.0088 (8)
N60.0158 (9)0.0230 (10)0.0161 (9)0.0039 (8)0.0025 (7)0.0038 (8)
N70.0169 (9)0.0198 (10)0.0183 (9)0.0038 (8)0.0035 (7)0.0065 (8)
N80.0282 (11)0.0239 (11)0.0213 (10)0.0116 (9)0.0080 (8)0.0113 (8)
C10.0178 (11)0.0333 (14)0.0240 (12)0.0037 (10)0.0042 (9)0.0119 (11)
C20.0159 (11)0.0499 (18)0.0265 (13)0.0069 (11)0.0083 (10)0.0175 (12)
C30.0204 (12)0.0486 (17)0.0238 (13)0.0153 (12)0.0098 (10)0.0134 (12)
C40.0224 (12)0.0377 (15)0.0207 (12)0.0136 (11)0.0072 (10)0.0092 (11)
C50.0171 (11)0.0318 (14)0.0146 (11)0.0095 (10)0.0044 (9)0.0112 (10)
C60.0156 (10)0.0267 (13)0.0153 (11)0.0068 (9)0.0037 (8)0.0071 (9)
C70.0252 (12)0.0289 (14)0.0269 (13)0.0087 (10)0.0110 (10)0.0032 (11)
C80.0141 (10)0.0185 (11)0.0163 (11)0.0044 (9)0.0023 (8)0.0070 (9)
C90.0132 (10)0.0196 (12)0.0189 (11)0.0039 (9)0.0040 (8)0.0060 (9)
C100.0161 (11)0.0220 (12)0.0270 (12)0.0026 (9)0.0072 (9)0.0019 (10)
C110.0239 (12)0.0290 (14)0.0259 (13)0.0099 (10)0.0104 (10)0.0115 (10)
C120.0324 (14)0.0428 (16)0.0264 (13)0.0204 (12)0.0137 (11)0.0198 (12)
C130.0254 (13)0.0471 (17)0.0229 (13)0.0151 (12)0.0068 (10)0.0128 (12)
C140.0197 (11)0.0385 (15)0.0204 (12)0.0073 (10)0.0022 (9)0.0057 (11)
C150.0149 (10)0.0300 (13)0.0189 (11)0.0074 (9)0.0052 (9)0.0035 (10)
C160.0154 (10)0.0240 (12)0.0164 (11)0.0041 (9)0.0028 (8)0.0015 (9)
C170.0200 (11)0.0252 (13)0.0238 (12)0.0005 (10)−0.0001 (9)0.0016 (10)
C180.0136 (10)0.0202 (12)0.0218 (11)0.0053 (9)0.0054 (9)0.0054 (9)
C190.0207 (11)0.0176 (11)0.0205 (11)0.0058 (9)0.0034 (9)0.0029 (9)
C200.0241 (12)0.0321 (15)0.0277 (13)0.0083 (11)−0.0011 (10)0.0096 (11)
Zn1—N22.061 (2)C3—C41.385 (3)
Zn1—N62.085 (2)C3—H30.9500
Zn1—O12.0880 (15)C4—C51.396 (3)
Zn1—O32.1470 (15)C4—H40.9500
Zn1—N52.1955 (19)C5—C61.492 (3)
Zn1—N12.2877 (19)C6—C71.491 (3)
O1—C81.268 (3)C7—H7A0.9800
O2—N41.397 (2)C7—H7B0.9800
O2—H2O0.9213C7—H7C0.9800
O3—C181.272 (3)C8—C91.508 (3)
O4—N81.404 (2)C9—C101.495 (3)
O4—H4O0.9287C10—H10A0.9800
O5—H5P0.9140C10—H10B0.9800
O5—H5O0.8626C10—H10C0.9800
O6—H6O0.9154C11—C121.398 (4)
O6—H6P0.9335C11—H110.9500
N1—C51.342 (3)C12—C131.367 (4)
N1—C11.343 (3)C12—H120.9500
N2—C61.287 (3)C13—C141.388 (4)
N2—N31.385 (2)C13—H130.9500
N3—C81.337 (3)C14—C151.404 (3)
N4—C91.284 (3)C14—H140.9500
N5—C111.327 (3)C15—C161.475 (3)
N5—C151.357 (3)C16—C171.492 (3)
N6—C161.287 (3)C17—H17A0.9800
N6—N71.387 (3)C17—H17B0.9800
N7—C181.325 (3)C17—H17C0.9800
N8—C191.274 (3)C18—C191.508 (3)
C1—C21.398 (4)C19—C201.491 (3)
C1—H10.9500C20—H20A0.9800
C2—C31.375 (4)C20—H20B0.9800
C2—H20.9500C20—H20C0.9800
N2—Zn1—N6162.52 (7)C6—C7—H7A109.5
N2—Zn1—O176.10 (7)C6—C7—H7B109.5
N6—Zn1—O1121.37 (7)H7A—C7—H7B109.5
N2—Zn1—O3105.12 (7)C6—C7—H7C109.5
N6—Zn1—O374.17 (6)H7A—C7—H7C109.5
O1—Zn1—O396.43 (6)H7B—C7—H7C109.5
N2—Zn1—N5106.20 (7)O1—C8—N3127.01 (19)
N6—Zn1—N575.07 (7)O1—C8—C9117.25 (19)
O1—Zn1—N593.88 (7)N3—C8—C9115.72 (19)
O3—Zn1—N5148.54 (7)N4—C9—C10124.75 (19)
N2—Zn1—N173.97 (7)N4—C9—C8116.43 (19)
N6—Zn1—N188.55 (7)C10—C9—C8118.82 (19)
O1—Zn1—N1150.07 (7)C9—C10—H10A109.5
O3—Zn1—N190.90 (6)C9—C10—H10B109.5
N5—Zn1—N194.81 (7)H10A—C10—H10B109.5
C8—O1—Zn1111.22 (13)C9—C10—H10C109.5
N4—O2—H2O103.0H10A—C10—H10C109.5
C18—O3—Zn1110.35 (13)H10B—C10—H10C109.5
N8—O4—H4O105.6N5—C11—C12122.6 (2)
H5P—O5—H5O111.3N5—C11—H11118.7
H6O—O6—H6P104.7C12—C11—H11118.7
C5—N1—C1118.2 (2)C13—C12—C11118.7 (2)
C5—N1—Zn1112.02 (14)C13—C12—H12120.7
C1—N1—Zn1129.54 (18)C11—C12—H12120.7
C6—N2—N3119.76 (19)C12—C13—C14119.8 (2)
C6—N2—Zn1123.02 (15)C12—C13—H13120.1
N3—N2—Zn1117.15 (14)C14—C13—H13120.1
C8—N3—N2108.51 (18)C13—C14—C15118.6 (2)
C9—N4—O2112.04 (18)C13—C14—H14120.7
C11—N5—C15119.1 (2)C15—C14—H14120.7
C11—N5—Zn1127.97 (17)N5—C15—C14121.1 (2)
C15—N5—Zn1112.92 (14)N5—C15—C16116.1 (2)
C16—N6—N7120.20 (19)C14—C15—C16122.7 (2)
C16—N6—Zn1119.99 (16)N6—C16—C15114.0 (2)
N7—N6—Zn1117.29 (14)N6—C16—C17125.2 (2)
C18—N7—N6108.84 (18)C15—C16—C17120.8 (2)
C19—N8—O4111.39 (19)C16—C17—H17A109.5
N1—C1—C2122.3 (3)C16—C17—H17B109.5
N1—C1—H1118.9H17A—C17—H17B109.5
C2—C1—H1118.9C16—C17—H17C109.5
C3—C2—C1119.1 (2)H17A—C17—H17C109.5
C3—C2—H2120.5H17B—C17—H17C109.5
C1—C2—H2120.5O3—C18—N7126.8 (2)
C2—C3—C4119.1 (2)O3—C18—C19116.84 (19)
C2—C3—H3120.4N7—C18—C19116.34 (19)
C4—C3—H3120.4N8—C19—C20126.5 (2)
C3—C4—C5118.7 (3)N8—C19—C18114.9 (2)
C3—C4—H4120.6C20—C19—C18118.58 (19)
C5—C4—H4120.6C19—C20—H20A109.5
N1—C5—C4122.5 (2)C19—C20—H20B109.5
N1—C5—C6116.25 (19)H20A—C20—H20B109.5
C4—C5—C6121.2 (2)C19—C20—H20C109.5
N2—C6—C7125.1 (2)H20A—C20—H20C109.5
N2—C6—C5114.6 (2)H20B—C20—H20C109.5
C7—C6—C5120.3 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2O···N7i0.921.892.801 (3)170
O4—H4O···O5ii0.931.772.675 (3)164
O5—H5P···O30.911.932.811 (3)161
O5—H5O···O60.862.082.889 (3)157
O6—H6O···N4iii0.922.122.934 (3)148
O6—H6P···N8ii0.932.102.971 (3)154
Zn1—N22.061 (2)
Zn1—N62.085 (2)
Zn1—O12.0880 (15)
Zn1—O32.1470 (15)
Zn1—N52.1955 (19)
Zn1—N12.2877 (19)
N2—Zn1—O176.10 (7)
N6—Zn1—O374.17 (6)
N6—Zn1—N575.07 (7)
N2—Zn1—N173.97 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯N7i0.921.892.801 (3)170
O4—H4O⋯O5ii0.931.772.675 (3)164
O5—H5P⋯O30.911.932.811 (3)161
O5—H5O⋯O60.862.082.889 (3)157
O6—H6O⋯N4iii0.922.122.934 (3)148
O6—H6P⋯N8ii0.932.102.971 (3)154

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  Structural variation in transition-metal bispidine compounds.

Authors:  Peter Comba; Marion Kerscher; Michael Merz; Vera Müller; Hans Pritzkow; Rainer Remenyi; Wolfgang Schiek; Yun Xiong
Journal:  Chemistry       Date:  2002-12-16       Impact factor: 5.236

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  2-Hydroxy-imino-N'-[1-(2-pyrid-yl)ethyl-idene]propanohydrazide.

Authors:  Yurii S Moroz; Irina S Konovalova; Turganbay S Iskenderov; Svetlana V Pavlova; Oleg V Shishkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-26

4.  (2E)-2-Hydroxy-imino-N'-[(E)-2-pyridyl-methyl-ene]propanohydrazide.

Authors:  Yurii S Moroz; Valentina A Kalibabchuk; Elżbieta Gumienna-Kontecka; Viktor V Skopenko; Svetlana V Pavlova
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

5.  Dichlorido{2-hydroxy-imino-N'-[1-(2-pyrid-yl)ethyl-idene]propanohydrazide-κN,N',O}zinc(II) hemihydrate.

Authors:  Yurii S Moroz; Tetyana Yu Sliva; Kinga Kulon; Henryk Kozłowski; Igor O Fritsky
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-16

6.  Synthesis, structural characterization and antimicrobial activities of 12 zinc(II) complexes with four thiosemicarbazone and two semicarbazone ligands.

Authors:  Noriko Chikaraishi Kasuga; Kiyoshi Sekino; Motoki Ishikawa; Ayano Honda; Masaki Yokoyama; Saori Nakano; Nobuhiro Shimada; Chisa Koumo; Kenji Nomiya
Journal:  J Inorg Biochem       Date:  2003-08-01       Impact factor: 4.155

7.  Synthesis and structure of [2 x 2] molecular grid copper(II) and nickel(II) complexes with a new polydentate oxime-containing Schiff base ligand.

Authors:  Yurii S Moroz; Kinga Kulon; Matti Haukka; Elzbieta Gumienna-Kontecka; Henryk Kozłowski; Franc Meyer; Igor O Fritsky
Journal:  Inorg Chem       Date:  2008-05-24       Impact factor: 5.165

  7 in total

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